Wall clock time and date at job start Wed Apr 1 2020 00:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47239 * 2 1 4 4 H 1.09005 * 109.46746 * 304.98884 * 3 2 1 5 5 N 1.46502 * 109.47098 * 64.98685 * 3 2 1 6 6 C 1.34779 * 120.00038 * 275.00233 * 5 3 2 7 7 O 1.21506 * 119.99879 * 0.02562 * 6 5 3 8 8 O 1.34633 * 119.99611 * 179.97438 * 6 5 3 9 9 C 1.45203 * 116.99575 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47188 * 60.00516 * 9 8 6 11 11 C 1.53004 * 109.46832 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47317 * 299.99973 * 9 8 6 13 13 C 1.50698 * 109.47568 * 184.99203 * 3 2 1 14 14 O 1.21284 * 119.99933 * 263.14473 * 13 3 2 15 15 N 1.34779 * 120.00080 * 83.13599 * 13 3 2 16 16 C 1.46959 * 120.59185 * 4.85097 * 15 13 3 17 17 C 1.53813 * 108.39688 * 124.75740 * 16 15 13 18 18 N 1.46959 * 108.58201 * 49.63395 * 17 16 15 19 19 C 1.36939 * 120.59375 * 124.62263 * 18 17 16 20 20 H 1.08005 * 120.00023 * 212.73448 * 19 18 17 21 21 C 1.38810 * 120.00251 * 32.74191 * 19 18 17 22 22 N 1.31624 * 119.99618 * 10.85630 * 21 19 18 23 23 Si 1.86794 * 120.00213 * 190.85664 * 21 19 18 24 24 H 1.48497 * 109.47235 * 60.00011 * 23 21 19 25 25 H 1.48498 * 109.47157 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46930 * 299.99675 * 23 21 19 27 27 C 1.46970 * 118.81296 * 304.64898 * 18 17 16 28 28 C 1.46959 * 120.59078 * 185.12825 * 15 13 3 29 29 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47211 * 300.00337 * 1 2 3 31 31 H 1.08999 * 109.47316 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47316 * 119.99823 * 2 1 3 33 33 H 1.09002 * 109.47132 * 240.00147 * 2 1 3 34 34 H 0.97000 * 119.99589 * 95.00161 * 5 3 2 35 35 H 1.08995 * 109.47160 * 59.99435 * 10 9 8 36 36 H 1.09002 * 109.47244 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.46533 * 299.99833 * 10 9 8 38 38 H 1.09000 * 109.47294 * 59.99989 * 11 9 8 39 39 H 1.09000 * 109.47054 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.47473 * 299.99796 * 11 9 8 41 41 H 1.08995 * 109.46725 * 60.00326 * 12 9 8 42 42 H 1.09000 * 109.46878 * 180.02562 * 12 9 8 43 43 H 1.09000 * 109.47034 * 300.00149 * 12 9 8 44 44 H 1.09000 * 109.60738 * 244.53575 * 16 15 13 45 45 H 1.08997 * 109.61417 * 5.05093 * 16 15 13 46 46 H 1.09001 * 109.73975 * 289.84642 * 17 16 15 47 47 H 1.09007 * 109.53332 * 169.30258 * 17 16 15 48 48 H 0.96996 * 120.00042 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.60735 * 295.48375 * 27 18 17 50 50 H 1.09000 * 109.61123 * 174.96444 * 27 18 17 51 51 H 1.09000 * 109.61556 * 354.94747 * 28 15 13 52 52 H 1.09006 * 109.61353 * 115.46330 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8420 5 7 1.6522 2.0976 1.2517 6 6 0.4349 2.6645 1.3666 7 8 -0.3411 2.6319 0.4321 8 8 0.0783 3.2661 2.5171 9 6 -1.2475 3.8558 2.5692 10 6 -2.2985 2.7697 2.3303 11 6 -1.4706 4.4883 3.9444 12 6 -1.3704 4.9311 1.4878 13 6 3.5419 1.4444 -0.1236 14 8 4.2320 1.5403 0.8691 15 7 4.1183 1.3394 -1.3374 16 6 3.2979 1.3292 -2.5566 17 6 3.7962 2.4486 -3.4865 18 7 5.2559 2.3362 -3.6141 19 6 5.8415 2.2287 -4.8473 20 1 6.7450 1.6492 -4.9674 21 6 5.2741 2.8645 -5.9429 22 7 4.3057 3.7386 -5.7678 23 14 5.8848 2.4798 -7.6658 24 1 5.6900 1.0351 -7.9489 25 1 5.1210 3.2844 -8.6529 26 1 7.3284 2.8136 -7.7653 27 6 6.0760 2.3408 -2.3945 28 6 5.5781 1.2271 -1.4649 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.2716 2.1233 1.9978 35 1 -2.2109 2.0037 3.1007 36 1 -3.2938 3.2125 2.3690 37 1 -2.1393 2.3195 1.3505 38 1 -0.7219 5.2621 4.1142 39 1 -2.4661 4.9306 3.9837 40 1 -1.3830 3.7226 4.7152 41 1 -1.2113 4.4808 0.5080 42 1 -2.3656 5.3740 1.5273 43 1 -0.6217 5.7048 1.6580 44 1 3.3959 0.3650 -3.0554 45 1 2.2541 1.5051 -2.2967 46 1 3.5397 3.4199 -3.0636 47 1 3.3338 2.3402 -4.4676 48 1 3.9089 4.1827 -6.5334 49 1 5.9817 3.3045 -1.8939 50 1 7.1192 2.1612 -2.6544 51 1 6.0405 1.3355 -0.4839 52 1 5.8347 0.2557 -1.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495523836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:15 Heat of formation + Delta-G solvation = -89.018073 kcal Electronic energy + Delta-G solvation = -32038.230699 eV Core-core repulsion = 27845.982417 eV Total energy + Delta-G solvation = -4192.248283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.06043 -39.94245 -37.74037 -36.81623 -35.20349 -34.32583 -33.93685 -32.17764 -31.37833 -30.26223 -27.97762 -27.60503 -27.52317 -26.48971 -23.73838 -23.02844 -22.80654 -21.68205 -20.32238 -20.25571 -18.93933 -18.34157 -16.97768 -16.90109 -16.45367 -16.07029 -15.87466 -15.19375 -15.03344 -14.74916 -14.57567 -14.49291 -13.85348 -13.74464 -13.61579 -13.57168 -13.36189 -13.30893 -12.72290 -12.69297 -12.43942 -12.29502 -12.09927 -12.06062 -11.94133 -11.71422 -11.62368 -11.53995 -11.41487 -11.31411 -10.96279 -10.86962 -10.76417 -10.56608 -10.45692 -10.27813 -10.15767 -10.06523 -9.90266 -9.53379 -9.14914 -8.63020 -8.36883 -6.69770 -5.88847 -3.40058 1.99091 2.71373 2.84265 3.29021 3.32621 3.38571 3.39266 4.07712 4.39781 4.52613 4.53501 4.57892 4.72311 4.86087 4.93260 5.18491 5.26392 5.29349 5.33032 5.35184 5.39821 5.49081 5.50779 5.59859 5.69293 5.71557 5.74675 5.78961 5.79641 5.87705 5.89536 5.98606 6.06418 6.08356 6.11569 6.15578 6.25941 6.30458 6.34839 6.37151 6.49922 6.73524 6.84768 7.14851 7.40241 7.42785 7.67684 7.75062 8.30551 8.35512 8.36610 9.09236 9.69437 10.28542 11.18704 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.002741 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.604504 B =10214.025468 C =10809.558825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.145 3.855 4 H 0.118 0.882 5 N -0.693 5.693 6 C 0.655 3.345 7 O -0.562 6.562 8 O -0.365 6.365 9 C 0.137 3.863 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.185 4.185 13 C 0.508 3.492 14 O -0.555 6.555 15 N -0.587 5.587 16 C 0.072 3.928 17 C 0.160 3.840 18 N -0.590 5.590 19 C -0.259 4.259 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.903 5.903 23 Si 0.907 3.093 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.132 3.868 28 C 0.095 3.905 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.101 0.899 48 H 0.257 0.743 49 H 0.024 0.976 50 H 0.068 0.932 51 H 0.083 0.917 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -3.689 15.890 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.135 0.865 5 N -0.354 5.354 6 C 0.408 3.592 7 O -0.451 6.451 8 O -0.280 6.280 9 C 0.100 3.900 10 C -0.241 4.241 11 C -0.198 4.198 12 C -0.242 4.242 13 C 0.294 3.706 14 O -0.434 6.434 15 N -0.318 5.318 16 C -0.051 4.051 17 C 0.033 3.967 18 N -0.313 5.313 19 C -0.389 4.389 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.737 3.263 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.208 1.208 27 C 0.004 3.996 28 C -0.029 4.029 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.119 0.881 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.975 -3.488 15.811 20.138 hybrid contribution 0.502 -0.032 -0.687 0.852 sum -11.472 -3.519 15.124 19.307 Atomic orbital electron populations 1.21799 0.93927 1.00894 1.03267 1.21880 0.97665 0.93821 1.03331 1.20912 0.92516 0.95498 0.87344 0.86471 1.44407 1.14768 1.58779 1.17452 1.17879 0.82681 0.77124 0.81519 1.90913 1.51335 1.63280 1.39592 1.86307 1.36823 1.68342 1.36493 1.22060 0.78247 0.92836 0.96872 1.22527 0.98194 0.98684 1.04651 1.21861 1.02553 1.01131 0.94252 1.22529 1.02468 0.98277 1.00917 1.20341 0.89518 0.77068 0.83625 1.90642 1.64507 1.51565 1.36691 1.48011 1.08290 1.69942 1.05546 1.22973 0.93692 1.02787 0.85698 1.21252 0.84837 0.92340 0.98264 1.43922 1.00711 1.85585 1.01105 1.19127 1.09989 1.25220 0.84543 0.91677 1.25226 0.99038 0.95922 0.98990 1.69940 1.27662 1.27228 1.29815 0.86307 0.78376 0.77801 0.83853 1.20861 1.21542 1.20778 1.21313 0.95432 0.94661 0.88146 1.22276 0.78953 1.00612 1.01029 0.93162 0.92553 0.91568 0.91142 0.90084 0.74940 0.92312 0.91246 0.89104 0.91445 0.90199 0.91557 0.89091 0.91233 0.92136 0.91285 0.90738 0.95714 0.88110 0.93312 0.95817 0.91402 0.89882 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.51 37.16 0.32 -1.31 16 2 C -0.13 -1.53 5.59 -26.73 -0.15 -1.68 16 3 C 0.14 2.03 1.85 -69.08 -0.13 1.90 16 4 H 0.12 1.74 5.60 -51.93 -0.29 1.45 16 5 N -0.69 -9.44 5.01 -59.86 -0.30 -9.74 16 6 C 0.65 9.01 6.62 54.06 0.36 9.37 16 7 O -0.56 -8.28 9.01 -19.28 -0.17 -8.45 16 8 O -0.36 -4.60 9.94 -40.30 -0.40 -5.00 16 9 C 0.14 1.40 1.13 -90.62 -0.10 1.29 16 10 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 11 C -0.14 -1.06 8.85 37.16 0.33 -0.73 16 12 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 13 C 0.51 8.41 6.91 -10.99 -0.08 8.33 16 14 O -0.55 -10.29 15.38 5.55 0.09 -10.20 16 15 N -0.59 -10.13 2.94 -172.22 -0.51 -10.63 16 16 C 0.07 1.25 6.30 -3.37 -0.02 1.23 16 17 C 0.16 3.56 5.47 -3.37 -0.02 3.54 16 18 N -0.59 -14.09 2.95 -171.76 -0.51 -14.60 16 19 C -0.26 -6.76 9.56 -15.06 -0.14 -6.91 16 20 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 21 C 0.01 0.20 5.04 -17.43 -0.09 0.11 16 22 N -0.90 -25.12 11.13 55.49 0.62 -24.50 16 23 Si 0.91 20.86 29.57 -169.99 -5.03 15.83 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.13 2.69 6.67 -3.59 -0.02 2.67 16 28 C 0.10 1.68 6.60 -3.60 -0.02 1.65 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.70 5.64 -51.93 -0.29 0.41 16 31 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.41 5.54 7.87 -40.82 -0.32 5.21 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.12 5.40 -51.93 -0.28 0.84 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 2.48 6.13 -51.93 -0.32 2.16 16 48 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 51 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 52 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -29.79 398.22 -8.11 -37.90 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.75 Total: 6.98 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 0.85 Total: 16.41 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.70 Total: -59.47 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.49 Total: -23.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.79 -8.11 -37.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495523836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.116 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds