Wall clock time and date at job start Wed Apr 1 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47239 * 2 1 4 4 H 1.09005 * 109.46746 * 304.98884 * 3 2 1 5 5 N 1.46502 * 109.47098 * 64.98685 * 3 2 1 6 6 C 1.34779 * 120.00038 * 275.00233 * 5 3 2 7 7 O 1.21506 * 119.99879 * 0.02562 * 6 5 3 8 8 O 1.34633 * 119.99611 * 179.97438 * 6 5 3 9 9 C 1.45203 * 116.99575 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47188 * 60.00516 * 9 8 6 11 11 C 1.53004 * 109.46832 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47317 * 299.99973 * 9 8 6 13 13 C 1.50698 * 109.47568 * 184.99203 * 3 2 1 14 14 O 1.21284 * 119.99933 * 263.14473 * 13 3 2 15 15 N 1.34779 * 120.00080 * 83.13599 * 13 3 2 16 16 C 1.46959 * 120.59185 * 4.85097 * 15 13 3 17 17 C 1.53813 * 108.39688 * 124.75740 * 16 15 13 18 18 N 1.46959 * 108.58201 * 49.63395 * 17 16 15 19 19 C 1.36939 * 120.59375 * 124.62263 * 18 17 16 20 20 H 1.08005 * 120.00023 * 212.73448 * 19 18 17 21 21 C 1.38810 * 120.00251 * 32.74191 * 19 18 17 22 22 N 1.31624 * 119.99618 * 10.85630 * 21 19 18 23 23 Si 1.86794 * 120.00213 * 190.85664 * 21 19 18 24 24 H 1.48497 * 109.47235 * 60.00011 * 23 21 19 25 25 H 1.48498 * 109.47157 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46930 * 299.99675 * 23 21 19 27 27 C 1.46970 * 118.81296 * 304.64898 * 18 17 16 28 28 C 1.46959 * 120.59078 * 185.12825 * 15 13 3 29 29 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47211 * 300.00337 * 1 2 3 31 31 H 1.08999 * 109.47316 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47316 * 119.99823 * 2 1 3 33 33 H 1.09002 * 109.47132 * 240.00147 * 2 1 3 34 34 H 0.97000 * 119.99589 * 95.00161 * 5 3 2 35 35 H 1.08995 * 109.47160 * 59.99435 * 10 9 8 36 36 H 1.09002 * 109.47244 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.46533 * 299.99833 * 10 9 8 38 38 H 1.09000 * 109.47294 * 59.99989 * 11 9 8 39 39 H 1.09000 * 109.47054 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.47473 * 299.99796 * 11 9 8 41 41 H 1.08995 * 109.46725 * 60.00326 * 12 9 8 42 42 H 1.09000 * 109.46878 * 180.02562 * 12 9 8 43 43 H 1.09000 * 109.47034 * 300.00149 * 12 9 8 44 44 H 1.09000 * 109.60738 * 244.53575 * 16 15 13 45 45 H 1.08997 * 109.61417 * 5.05093 * 16 15 13 46 46 H 1.09001 * 109.73975 * 289.84642 * 17 16 15 47 47 H 1.09007 * 109.53332 * 169.30258 * 17 16 15 48 48 H 0.96996 * 120.00042 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.60735 * 295.48375 * 27 18 17 50 50 H 1.09000 * 109.61123 * 174.96444 * 27 18 17 51 51 H 1.09000 * 109.61556 * 354.94747 * 28 15 13 52 52 H 1.09006 * 109.61353 * 115.46330 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8420 5 7 1.6522 2.0976 1.2517 6 6 0.4349 2.6645 1.3666 7 8 -0.3411 2.6319 0.4321 8 8 0.0783 3.2661 2.5171 9 6 -1.2475 3.8558 2.5692 10 6 -2.2985 2.7697 2.3303 11 6 -1.4706 4.4883 3.9444 12 6 -1.3704 4.9311 1.4878 13 6 3.5419 1.4444 -0.1236 14 8 4.2320 1.5403 0.8691 15 7 4.1183 1.3394 -1.3374 16 6 3.2979 1.3292 -2.5566 17 6 3.7962 2.4486 -3.4865 18 7 5.2559 2.3362 -3.6141 19 6 5.8415 2.2287 -4.8473 20 1 6.7450 1.6492 -4.9674 21 6 5.2741 2.8645 -5.9429 22 7 4.3057 3.7386 -5.7678 23 14 5.8848 2.4798 -7.6658 24 1 5.6900 1.0351 -7.9489 25 1 5.1210 3.2844 -8.6529 26 1 7.3284 2.8136 -7.7653 27 6 6.0760 2.3408 -2.3945 28 6 5.5781 1.2271 -1.4649 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.2716 2.1233 1.9978 35 1 -2.2109 2.0037 3.1007 36 1 -3.2938 3.2125 2.3690 37 1 -2.1393 2.3195 1.3505 38 1 -0.7219 5.2621 4.1142 39 1 -2.4661 4.9306 3.9837 40 1 -1.3830 3.7226 4.7152 41 1 -1.2113 4.4808 0.5080 42 1 -2.3656 5.3740 1.5273 43 1 -0.6217 5.7048 1.6580 44 1 3.3959 0.3650 -3.0554 45 1 2.2541 1.5051 -2.2967 46 1 3.5397 3.4199 -3.0636 47 1 3.3338 2.3402 -4.4676 48 1 3.9089 4.1827 -6.5334 49 1 5.9817 3.3045 -1.8939 50 1 7.1192 2.1612 -2.6544 51 1 6.0405 1.3355 -0.4839 52 1 5.8347 0.2557 -1.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495523836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:14 Heat of formation + Delta-G solvation = -107.649257 kcal Electronic energy + Delta-G solvation = -32039.038608 eV Core-core repulsion = 27845.982417 eV Total energy + Delta-G solvation = -4193.056192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.13888 -41.21455 -38.93296 -38.24890 -36.32280 -35.70278 -35.13721 -33.40980 -32.93939 -31.91401 -29.37222 -28.32653 -28.26817 -27.99977 -25.47309 -24.53213 -23.82825 -22.98379 -21.71248 -21.27172 -20.29458 -19.57007 -18.52006 -18.07482 -17.50570 -17.41831 -17.14246 -16.73440 -16.35349 -16.13490 -15.57942 -15.50083 -15.46978 -15.21159 -15.02446 -14.84903 -14.72418 -14.41969 -14.04138 -13.66594 -13.33974 -13.32329 -13.14939 -13.08355 -12.98519 -12.88486 -12.86870 -12.67182 -12.53971 -12.51592 -12.44945 -12.26228 -12.25127 -12.03607 -11.97047 -11.84851 -11.69242 -11.33512 -11.05944 -10.90578 -10.58863 -10.26227 -9.89640 -8.61407 -7.88323 -5.43353 0.95486 1.42975 1.50519 1.51291 1.58172 1.74229 1.97002 2.50774 3.10023 3.22913 3.28307 3.56325 3.78258 3.80887 3.83928 3.87595 3.98090 4.18309 4.22524 4.30906 4.34607 4.46104 4.56285 4.59820 4.61771 4.65904 4.71148 4.75361 4.79864 4.80167 4.81745 4.87855 4.91497 4.96578 5.03532 5.07200 5.12066 5.20049 5.23843 5.32847 5.38876 5.41138 5.48998 5.58110 5.59874 5.63899 6.32828 6.33561 6.38294 6.94505 7.11673 7.30586 7.77168 8.32651 9.16382 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.002741 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.604504 B =10214.025468 C =10809.558825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.151 3.849 4 H 0.109 0.891 5 N -0.694 5.694 6 C 0.654 3.346 7 O -0.573 6.573 8 O -0.371 6.371 9 C 0.125 3.875 10 C -0.178 4.178 11 C -0.136 4.136 12 C -0.182 4.182 13 C 0.511 3.489 14 O -0.572 6.572 15 N -0.591 5.591 16 C 0.091 3.909 17 C 0.165 3.835 18 N -0.608 5.608 19 C -0.267 4.267 20 H 0.070 0.930 21 C -0.044 4.044 22 N -0.935 5.935 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.296 1.296 26 H -0.278 1.278 27 C 0.131 3.869 28 C 0.106 3.894 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.098 0.902 46 H -0.006 1.006 47 H 0.075 0.925 48 H 0.252 0.748 49 H 0.005 0.995 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 -5.033 16.932 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.044 3.956 4 H 0.126 0.874 5 N -0.355 5.355 6 C 0.407 3.593 7 O -0.463 6.463 8 O -0.286 6.286 9 C 0.089 3.911 10 C -0.235 4.235 11 C -0.193 4.193 12 C -0.239 4.239 13 C 0.299 3.701 14 O -0.453 6.453 15 N -0.323 5.323 16 C -0.033 4.033 17 C 0.039 3.961 18 N -0.331 5.331 19 C -0.396 4.396 20 H 0.088 0.912 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.204 1.204 27 C 0.005 3.995 28 C -0.018 4.018 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.012 0.988 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.023 0.977 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.700 -4.847 16.887 21.679 hybrid contribution 0.734 0.466 -0.938 1.279 sum -11.966 -4.381 15.949 20.415 Atomic orbital electron populations 1.21713 0.93446 1.01753 1.02207 1.21875 0.97880 0.92168 1.04118 1.20857 0.90483 0.96914 0.87340 0.87376 1.44399 1.14903 1.58943 1.17258 1.17939 0.82525 0.77049 0.81754 1.90917 1.51656 1.63667 1.40100 1.86322 1.38302 1.68155 1.35794 1.22445 0.77388 0.92972 0.98328 1.22471 0.99059 0.98612 1.03392 1.21892 1.03870 1.01087 0.92466 1.22496 1.03698 0.98164 0.99575 1.20699 0.90470 0.75987 0.82934 1.90634 1.65257 1.52201 1.37186 1.48032 1.08187 1.70254 1.05789 1.22704 0.94625 1.01153 0.84790 1.21049 0.84344 0.92796 0.97920 1.44184 1.01593 1.85776 1.01563 1.19465 1.09978 1.24631 0.85574 0.91231 1.25957 0.99499 0.96070 1.02448 1.70110 1.29033 1.28526 1.30301 0.85300 0.77677 0.77722 0.79433 1.19900 1.22238 1.20378 1.21389 0.95733 0.94993 0.87423 1.22106 0.79273 0.99864 1.00537 0.91289 0.93641 0.92589 0.90543 0.89045 0.74815 0.91809 0.89112 0.91411 0.91638 0.87793 0.91026 0.91808 0.88921 0.92627 0.89915 0.88355 0.98789 0.90666 0.93917 0.97666 0.90624 0.89138 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.51 71.98 0.61 -2.26 16 2 C -0.12 -2.67 5.59 30.60 0.17 -2.50 16 3 C 0.15 4.09 1.85 44.25 0.08 4.18 16 4 H 0.11 3.16 5.60 -2.38 -0.01 3.14 16 5 N -0.69 -18.53 5.01 -573.71 -2.87 -21.40 16 6 C 0.65 17.83 6.62 129.79 0.86 18.69 16 7 O -0.57 -16.93 9.01 19.82 0.18 -16.75 16 8 O -0.37 -9.14 9.94 -55.42 -0.55 -9.69 16 9 C 0.12 2.40 1.13 -10.79 -0.01 2.38 16 10 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 11 C -0.14 -1.76 8.85 71.98 0.64 -1.12 16 12 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 13 C 0.51 16.34 6.91 87.66 0.61 16.94 16 14 O -0.57 -20.59 15.38 -3.04 -0.05 -20.63 16 15 N -0.59 -19.73 2.94 -817.16 -2.40 -22.14 16 16 C 0.09 3.06 6.30 86.57 0.55 3.61 16 17 C 0.17 7.52 5.47 86.57 0.47 7.99 16 18 N -0.61 -29.24 2.95 -697.31 -2.06 -31.30 16 19 C -0.27 -13.93 9.56 84.03 0.80 -13.13 16 20 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 21 C -0.04 -2.34 5.04 84.86 0.43 -1.91 16 22 N -0.93 -53.31 11.13 21.65 0.24 -53.07 16 23 Si 0.97 43.06 29.57 68.60 2.03 45.09 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.13 5.35 6.67 86.42 0.58 5.93 16 28 C 0.11 3.59 6.60 86.42 0.57 4.16 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.08 5.64 -2.39 -0.01 1.06 16 31 H 0.05 1.32 7.84 -2.39 -0.02 1.30 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.85 7.94 -2.39 -0.02 1.83 16 34 H 0.41 10.88 7.87 -92.71 -0.73 10.15 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.53 5.88 -2.39 -0.01 1.52 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.66 5.88 -2.39 -0.01 1.64 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.10 2.85 5.40 -2.39 -0.01 2.84 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.08 3.81 6.13 -2.38 -0.01 3.80 16 48 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 49 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 51 H 0.09 2.97 6.99 -2.39 -0.02 2.95 16 52 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -64.87 398.22 2.26 -62.61 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.19 Total: 29.94 kcal Atomic # 6 Polarization: 29.79 SS G_CDS: 7.56 Total: 37.34 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -7.09 Total: -127.91 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.42 Total: -47.07 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -64.87 2.26 -62.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495523836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.042 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds