Wall clock time and date at job start Wed Apr 1 2020 00:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47055 * 305.61968 * 3 2 1 5 5 C 1.50696 * 109.47121 * 185.61493 * 3 2 1 6 6 H 1.07996 * 120.00390 * 265.12876 * 5 3 2 7 7 C 1.37875 * 119.99794 * 85.13212 * 5 3 2 8 8 N 1.31517 * 120.00038 * 185.02386 * 7 5 3 9 9 Si 1.86796 * 120.00324 * 5.01585 * 7 5 3 10 10 H 1.48502 * 109.47270 * 94.89345 * 9 7 5 11 11 H 1.48496 * 109.47813 * 214.89808 * 9 7 5 12 12 H 1.48501 * 109.46985 * 334.89954 * 9 7 5 13 13 N 1.46503 * 109.47110 * 65.61533 * 3 2 1 14 14 C 1.34778 * 120.00091 * 274.99695 * 13 3 2 15 15 O 1.21584 * 120.00039 * 4.41566 * 14 13 3 16 16 N 1.34781 * 119.99968 * 184.41127 * 14 13 3 17 17 C 1.46965 * 120.59274 * 174.91379 * 16 14 13 18 18 C 1.53369 * 108.63705 * 235.25244 * 17 16 14 19 19 N 1.46965 * 108.63056 * 310.57868 * 18 17 16 20 20 C 1.34779 * 120.59075 * 235.20273 * 19 18 17 21 21 O 1.21518 * 120.00266 * 0.02562 * 20 19 18 22 22 O 1.34635 * 119.99807 * 180.02562 * 20 19 18 23 23 C 1.45209 * 116.99988 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47105 * 59.99312 * 23 22 20 25 25 C 1.53006 * 109.46666 * 299.99572 * 23 22 20 26 26 C 1.52993 * 109.47170 * 179.97438 * 23 22 20 27 27 C 1.46959 * 118.81541 * 55.48267 * 19 18 17 28 28 C 1.46963 * 120.59292 * 354.94522 * 16 14 13 29 29 H 1.09000 * 109.47464 * 300.00362 * 1 2 3 30 30 H 1.09005 * 109.46923 * 60.00240 * 1 2 3 31 31 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47276 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.46761 * 119.99370 * 2 1 3 34 34 H 0.97001 * 120.00263 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99942 * 95.00046 * 13 3 2 36 36 H 1.09003 * 109.60459 * 115.50722 * 17 16 14 37 37 H 1.09000 * 109.60946 * 354.99950 * 17 16 14 38 38 H 1.08997 * 109.60866 * 190.83161 * 18 17 16 39 39 H 1.08994 * 109.61047 * 70.31944 * 18 17 16 40 40 H 1.09006 * 109.47321 * 300.00048 * 24 23 22 41 41 H 1.08995 * 109.47357 * 60.00712 * 24 23 22 42 42 H 1.09004 * 109.46808 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.47231 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46865 * 300.00294 * 25 23 22 45 45 H 1.09001 * 109.46999 * 59.99962 * 25 23 22 46 46 H 1.08991 * 109.47446 * 299.99707 * 26 23 22 47 47 H 1.09003 * 109.47314 * 60.00007 * 26 23 22 48 48 H 1.09004 * 109.47049 * 179.97438 * 26 23 22 49 49 H 1.08998 * 109.61201 * 64.26364 * 27 19 18 50 50 H 1.09006 * 109.61063 * 184.77645 * 27 19 18 51 51 H 1.09005 * 109.60326 * 244.49528 * 28 16 14 52 52 H 1.08996 * 109.60970 * 4.82970 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1390 6 1 4.1643 1.4946 0.7411 7 6 4.1170 1.3834 -1.3899 8 7 5.4232 1.2857 -1.5080 9 14 3.0429 1.4387 -2.9172 10 1 2.9575 2.8363 -3.4120 11 1 3.6352 0.5760 -3.9707 12 1 1.6817 0.9480 -2.5830 13 7 1.6651 2.0930 1.2580 14 6 0.4490 2.6595 1.3875 15 8 -0.3660 2.5613 0.4906 16 7 0.1364 3.3347 2.5113 17 6 -1.1421 4.0511 2.6222 18 6 -0.8543 5.5152 2.9768 19 7 0.0773 5.5488 4.1129 20 6 -0.2349 6.2248 5.2363 21 8 -1.2951 6.8134 5.3165 22 8 0.6277 6.2481 6.2697 23 6 0.2252 6.9954 7.4478 24 6 -1.0711 6.4060 8.0074 25 6 -0.0024 8.4604 7.0692 26 6 1.3245 6.9071 8.5081 27 6 1.3582 4.8372 3.9998 28 6 1.0681 3.3684 3.6473 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8289 1.2429 -2.3880 35 1 2.2921 2.1160 1.9978 36 1 -1.7488 3.5973 3.4059 37 1 -1.6724 4.0024 1.6712 38 1 -1.7836 6.0147 3.2508 39 1 -0.4049 6.0175 2.1203 40 1 -1.8545 6.4687 7.2521 41 1 -0.9090 5.3625 8.2771 42 1 -1.3735 6.9674 8.8915 43 1 -0.3050 9.0213 7.9534 44 1 0.9211 8.8802 6.6705 45 1 -0.7858 8.5229 6.3139 46 1 1.4863 5.8635 8.7777 47 1 2.2482 7.3268 8.1097 48 1 1.0225 7.4685 9.3923 49 1 1.9615 5.2925 3.2144 50 1 1.8905 4.8888 4.9497 51 1 0.6186 2.8660 4.5039 52 1 1.9961 2.8663 3.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495908057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:10 Heat of formation + Delta-G solvation = -95.326100 kcal Electronic energy + Delta-G solvation = -31735.992034 eV Core-core repulsion = 27543.470214 eV Total energy + Delta-G solvation = -4192.521820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11903 -39.97408 -38.17901 -36.64911 -35.29981 -34.47279 -33.72130 -32.41844 -31.71505 -30.85685 -28.00982 -27.69683 -27.65397 -27.09854 -24.17895 -23.44619 -22.69926 -21.63624 -20.34925 -19.61746 -19.18706 -18.60947 -17.26709 -16.92801 -16.45436 -16.37125 -16.02863 -15.55391 -15.35516 -14.82953 -14.69326 -14.61933 -14.14848 -14.06904 -13.76914 -13.67628 -13.43662 -12.86634 -12.79142 -12.64291 -12.46938 -12.27019 -12.18119 -12.11963 -11.86516 -11.83038 -11.70940 -11.69726 -11.56498 -11.45224 -11.38665 -10.92186 -10.73935 -10.65538 -10.61782 -10.18794 -9.89873 -9.81147 -9.44795 -9.29548 -9.18024 -8.69595 -8.35960 -7.90288 -6.23061 -4.25540 1.88483 2.64566 3.01527 3.26292 3.35267 3.43846 3.58570 3.75655 4.33175 4.41264 4.42470 4.47249 4.61234 4.65765 4.82400 4.94742 5.02362 5.13955 5.17267 5.18429 5.24308 5.24481 5.39573 5.43731 5.48662 5.54148 5.56805 5.63845 5.70014 5.70690 5.85585 6.00492 6.02033 6.12198 6.15399 6.20116 6.24015 6.30828 6.57313 6.68761 6.84592 6.99666 7.06902 7.14043 7.21796 7.39111 7.50038 7.59775 8.13645 8.25119 8.68081 8.78457 9.19629 9.40369 10.88721 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.002575 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.982671 B =10871.904254 C =11438.196355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.256 3.744 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.252 1.252 13 N -0.719 5.719 14 C 0.700 3.300 15 O -0.591 6.591 16 N -0.639 5.639 17 C 0.119 3.881 18 C 0.113 3.887 19 N -0.593 5.593 20 C 0.655 3.345 21 O -0.571 6.571 22 O -0.362 6.362 23 C 0.136 3.864 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.141 4.141 27 C 0.097 3.903 28 C 0.100 3.900 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.267 0.733 35 H 0.387 0.613 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.102 0.898 51 H 0.070 0.930 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 10.295 18.948 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.153 3.847 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.176 1.176 13 N -0.372 5.372 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.379 5.379 17 C -0.005 4.005 18 C -0.010 4.010 19 N -0.333 5.333 20 C 0.410 3.590 21 O -0.461 6.461 22 O -0.277 6.277 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.027 4.027 28 C -0.025 4.025 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.120 0.880 51 H 0.088 0.912 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.352 10.391 18.204 23.377 hybrid contribution 0.050 0.049 -0.401 0.407 sum -10.302 10.439 17.803 23.066 Atomic orbital electron populations 1.21899 0.97253 0.98411 1.02317 1.22134 0.93882 0.99670 1.00938 1.19050 0.95171 0.88721 0.81778 0.93391 1.21001 0.88666 1.52558 0.94652 0.90483 1.24858 0.94841 0.93709 0.98869 1.69886 1.09662 1.48842 1.24321 0.86975 0.82011 0.78695 0.82852 1.20192 1.21118 1.17615 1.45844 1.13442 1.59295 1.18651 1.16029 0.83464 0.78667 0.81697 1.90872 1.49524 1.65922 1.40683 1.47254 1.19704 1.55728 1.15225 1.21750 0.85480 0.89788 1.03511 1.22145 0.94241 0.97741 0.86824 1.46906 1.20604 1.52494 1.13319 1.17953 0.81891 0.78651 0.80530 1.90879 1.24885 1.48365 1.81990 1.86295 1.46949 1.70021 1.24407 1.22066 0.95475 0.90841 0.81715 1.22510 0.97884 1.01067 1.02535 1.22513 1.03655 0.94255 1.03605 1.21859 0.97843 1.03346 0.96758 1.22271 0.84562 0.92088 1.03755 1.22027 0.94701 0.95963 0.89818 0.92826 0.93181 0.95572 0.92364 0.93162 0.92317 0.77701 0.91719 0.87365 0.87662 0.90404 0.89398 0.92166 0.91238 0.91227 0.92167 0.89400 0.91396 0.91408 0.90209 0.90165 0.88011 0.91187 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.48 37.16 0.32 -2.55 16 2 C -0.13 -2.75 5.16 -26.73 -0.14 -2.89 16 3 C 0.26 5.91 1.76 -69.08 -0.12 5.78 16 4 H 0.05 1.22 5.22 -51.93 -0.27 0.95 16 5 C -0.53 -13.86 9.06 -34.44 -0.31 -14.17 16 6 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 9 Si 0.87 21.08 26.35 -169.99 -4.48 16.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.25 -6.01 5.98 56.52 0.34 -5.67 16 13 N -0.72 -13.87 4.94 -59.81 -0.30 -14.16 16 14 C 0.70 12.95 7.05 -86.91 -0.61 12.34 16 15 O -0.59 -12.80 12.57 5.29 0.07 -12.73 16 16 N -0.64 -9.03 2.95 -177.94 -0.52 -9.56 16 17 C 0.12 1.47 6.58 -3.60 -0.02 1.45 16 18 C 0.11 1.26 6.59 -3.60 -0.02 1.24 16 19 N -0.59 -6.74 2.94 -178.01 -0.52 -7.26 16 20 C 0.65 8.00 7.74 54.06 0.42 8.42 16 21 O -0.57 -7.88 11.29 -19.29 -0.22 -8.09 16 22 O -0.36 -3.94 8.52 -40.31 -0.34 -4.28 16 23 C 0.14 1.20 1.13 -90.62 -0.10 1.10 16 24 C -0.18 -1.58 8.37 37.16 0.31 -1.26 16 25 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 26 C -0.14 -0.90 8.85 37.15 0.33 -0.57 16 27 C 0.10 0.99 6.64 -3.37 -0.02 0.96 16 28 C 0.10 1.10 6.61 -3.37 -0.02 1.08 16 29 H 0.05 1.09 5.53 -51.93 -0.29 0.81 16 30 H 0.05 1.08 7.83 -51.93 -0.41 0.67 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.31 6.93 -51.93 -0.36 0.95 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.39 6.59 6.01 -40.82 -0.25 6.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.46 7.02 -51.93 -0.36 1.09 16 38 H 0.11 1.14 6.99 -51.93 -0.36 0.78 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.96 5.88 -51.93 -0.31 0.66 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.90 6.91 -51.93 -0.36 0.54 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.10 1.03 5.55 -51.93 -0.29 0.74 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -32.01 393.50 -8.08 -40.09 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.67 Total: 6.77 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 0.21 Total: 11.76 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.57 Total: -56.05 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.49 Total: -25.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.48 Total: 16.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -8.08 -40.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495908057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.241 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds