Wall clock time and date at job start Wed Apr 1 2020 00:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47055 * 305.61968 * 3 2 1 5 5 C 1.50696 * 109.47121 * 185.61493 * 3 2 1 6 6 H 1.07996 * 120.00390 * 265.12876 * 5 3 2 7 7 C 1.37875 * 119.99794 * 85.13212 * 5 3 2 8 8 N 1.31517 * 120.00038 * 185.02386 * 7 5 3 9 9 Si 1.86796 * 120.00324 * 5.01585 * 7 5 3 10 10 H 1.48502 * 109.47270 * 94.89345 * 9 7 5 11 11 H 1.48496 * 109.47813 * 214.89808 * 9 7 5 12 12 H 1.48501 * 109.46985 * 334.89954 * 9 7 5 13 13 N 1.46503 * 109.47110 * 65.61533 * 3 2 1 14 14 C 1.34778 * 120.00091 * 274.99695 * 13 3 2 15 15 O 1.21584 * 120.00039 * 4.41566 * 14 13 3 16 16 N 1.34781 * 119.99968 * 184.41127 * 14 13 3 17 17 C 1.46965 * 120.59274 * 174.91379 * 16 14 13 18 18 C 1.53369 * 108.63705 * 235.25244 * 17 16 14 19 19 N 1.46965 * 108.63056 * 310.57868 * 18 17 16 20 20 C 1.34779 * 120.59075 * 235.20273 * 19 18 17 21 21 O 1.21518 * 120.00266 * 0.02562 * 20 19 18 22 22 O 1.34635 * 119.99807 * 180.02562 * 20 19 18 23 23 C 1.45209 * 116.99988 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47105 * 59.99312 * 23 22 20 25 25 C 1.53006 * 109.46666 * 299.99572 * 23 22 20 26 26 C 1.52993 * 109.47170 * 179.97438 * 23 22 20 27 27 C 1.46959 * 118.81541 * 55.48267 * 19 18 17 28 28 C 1.46963 * 120.59292 * 354.94522 * 16 14 13 29 29 H 1.09000 * 109.47464 * 300.00362 * 1 2 3 30 30 H 1.09005 * 109.46923 * 60.00240 * 1 2 3 31 31 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47276 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.46761 * 119.99370 * 2 1 3 34 34 H 0.97001 * 120.00263 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99942 * 95.00046 * 13 3 2 36 36 H 1.09003 * 109.60459 * 115.50722 * 17 16 14 37 37 H 1.09000 * 109.60946 * 354.99950 * 17 16 14 38 38 H 1.08997 * 109.60866 * 190.83161 * 18 17 16 39 39 H 1.08994 * 109.61047 * 70.31944 * 18 17 16 40 40 H 1.09006 * 109.47321 * 300.00048 * 24 23 22 41 41 H 1.08995 * 109.47357 * 60.00712 * 24 23 22 42 42 H 1.09004 * 109.46808 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.47231 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46865 * 300.00294 * 25 23 22 45 45 H 1.09001 * 109.46999 * 59.99962 * 25 23 22 46 46 H 1.08991 * 109.47446 * 299.99707 * 26 23 22 47 47 H 1.09003 * 109.47314 * 60.00007 * 26 23 22 48 48 H 1.09004 * 109.47049 * 179.97438 * 26 23 22 49 49 H 1.08998 * 109.61201 * 64.26364 * 27 19 18 50 50 H 1.09006 * 109.61063 * 184.77645 * 27 19 18 51 51 H 1.09005 * 109.60326 * 244.49528 * 28 16 14 52 52 H 1.08996 * 109.60970 * 4.82970 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1390 6 1 4.1643 1.4946 0.7411 7 6 4.1170 1.3834 -1.3899 8 7 5.4232 1.2857 -1.5080 9 14 3.0429 1.4387 -2.9172 10 1 2.9575 2.8363 -3.4120 11 1 3.6352 0.5760 -3.9707 12 1 1.6817 0.9480 -2.5830 13 7 1.6651 2.0930 1.2580 14 6 0.4490 2.6595 1.3875 15 8 -0.3660 2.5613 0.4906 16 7 0.1364 3.3347 2.5113 17 6 -1.1421 4.0511 2.6222 18 6 -0.8543 5.5152 2.9768 19 7 0.0773 5.5488 4.1129 20 6 -0.2349 6.2248 5.2363 21 8 -1.2951 6.8134 5.3165 22 8 0.6277 6.2481 6.2697 23 6 0.2252 6.9954 7.4478 24 6 -1.0711 6.4060 8.0074 25 6 -0.0024 8.4604 7.0692 26 6 1.3245 6.9071 8.5081 27 6 1.3582 4.8372 3.9998 28 6 1.0681 3.3684 3.6473 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8289 1.2429 -2.3880 35 1 2.2921 2.1160 1.9978 36 1 -1.7488 3.5973 3.4059 37 1 -1.6724 4.0024 1.6712 38 1 -1.7836 6.0147 3.2508 39 1 -0.4049 6.0175 2.1203 40 1 -1.8545 6.4687 7.2521 41 1 -0.9090 5.3625 8.2771 42 1 -1.3735 6.9674 8.8915 43 1 -0.3050 9.0213 7.9534 44 1 0.9211 8.8802 6.6705 45 1 -0.7858 8.5229 6.3139 46 1 1.4863 5.8635 8.7777 47 1 2.2482 7.3268 8.1097 48 1 1.0225 7.4685 9.3923 49 1 1.9615 5.2925 3.2144 50 1 1.8905 4.8888 4.9497 51 1 0.6186 2.8660 4.5039 52 1 1.9961 2.8663 3.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495908057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:09 Heat of formation + Delta-G solvation = -115.842504 kcal Electronic energy + Delta-G solvation = -31736.881692 eV Core-core repulsion = 27543.470214 eV Total energy + Delta-G solvation = -4193.411478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03844 -41.26254 -39.23103 -37.69776 -36.90877 -35.46028 -34.72580 -34.30381 -33.09135 -32.10143 -29.54439 -28.49848 -28.32549 -28.25483 -25.25196 -24.60916 -24.29009 -22.73264 -21.66417 -20.97906 -20.43673 -19.71598 -18.69419 -18.00005 -17.75390 -17.47886 -17.30915 -16.82455 -16.40494 -16.15712 -15.67362 -15.57054 -15.50212 -15.15682 -15.00521 -14.78091 -14.73009 -14.43440 -13.85105 -13.70549 -13.63969 -13.51578 -13.24705 -13.07514 -12.94513 -12.87937 -12.82684 -12.66172 -12.57766 -12.49789 -12.45658 -12.41111 -12.30979 -12.20954 -11.77270 -11.60004 -11.36221 -11.15167 -11.06014 -10.97244 -10.78626 -10.35952 -9.75152 -9.25768 -8.34876 -6.39119 1.02346 1.31328 1.37738 1.49858 1.71464 1.79525 2.30322 2.31461 2.76862 2.98093 3.18143 3.73263 3.79154 3.83246 3.84618 3.98716 4.05309 4.11780 4.28550 4.37038 4.39433 4.47925 4.55550 4.60048 4.62608 4.65322 4.67694 4.76629 4.80156 4.80737 4.88598 4.89024 4.91983 4.92598 5.13839 5.14952 5.26447 5.30692 5.31784 5.33712 5.39027 5.46180 5.47737 5.54781 5.61800 5.81309 5.95978 6.24504 6.31151 6.65125 7.19736 7.23107 7.27566 7.75272 8.80039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.002575 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.982671 B =10871.904254 C =11438.196355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C 0.264 3.736 4 H 0.026 0.974 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.932 5.932 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.280 1.280 12 H -0.247 1.247 13 N -0.719 5.719 14 C 0.699 3.301 15 O -0.624 6.624 16 N -0.632 5.632 17 C 0.123 3.877 18 C 0.121 3.879 19 N -0.594 5.594 20 C 0.653 3.347 21 O -0.590 6.590 22 O -0.364 6.364 23 C 0.125 3.875 24 C -0.178 4.178 25 C -0.179 4.179 26 C -0.136 4.136 27 C 0.102 3.898 28 C 0.099 3.901 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.399 0.601 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.120 0.880 51 H 0.088 0.912 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 10.501 20.867 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C 0.159 3.841 4 H 0.044 0.956 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.166 4.166 8 N -0.571 5.571 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.171 1.171 13 N -0.374 5.374 14 C 0.401 3.599 15 O -0.505 6.505 16 N -0.371 5.371 17 C -0.001 4.001 18 C -0.002 4.002 19 N -0.334 5.334 20 C 0.408 3.592 21 O -0.481 6.481 22 O -0.279 6.279 23 C 0.089 3.911 24 C -0.235 4.235 25 C -0.237 4.237 26 C -0.193 4.193 27 C -0.021 4.021 28 C -0.025 4.025 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.138 0.862 51 H 0.106 0.894 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.080 10.616 20.185 25.356 hybrid contribution 0.259 0.050 -0.845 0.885 sum -10.820 10.666 19.340 24.594 Atomic orbital electron populations 1.21743 0.95846 0.99671 1.01320 1.22051 0.95019 0.98402 1.00939 1.18727 0.92932 0.89712 0.82743 0.95608 1.21205 0.90211 1.50918 0.93797 0.92454 1.25498 0.95656 0.93939 1.01507 1.69981 1.11133 1.50966 1.25003 0.86164 0.80814 0.78524 0.80090 1.20371 1.20521 1.17075 1.45502 1.14319 1.59667 1.17867 1.16057 0.82691 0.78716 0.82417 1.90851 1.50320 1.67097 1.42282 1.47244 1.20686 1.54493 1.14662 1.21813 0.84650 0.90316 1.03357 1.22025 0.94542 0.96813 0.86793 1.46960 1.20872 1.52471 1.13137 1.18066 0.81817 0.78446 0.80860 1.90880 1.25755 1.49087 1.82391 1.86303 1.46664 1.70272 1.24620 1.22414 0.96619 0.90566 0.81535 1.22458 0.96987 1.01601 1.02495 1.22469 1.02720 0.94698 1.03773 1.21880 0.96920 1.03988 0.96509 1.22286 0.84118 0.91131 1.04562 1.22229 0.94329 0.96857 0.89077 0.93038 0.94930 0.93099 0.93370 0.92152 0.92190 0.76387 0.90381 0.88574 0.87248 0.90724 0.91945 0.91956 0.89219 0.89151 0.92186 0.91976 0.91095 0.91316 0.88080 0.90629 0.86180 0.89384 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.48 71.98 0.61 -4.39 16 2 C -0.12 -5.27 5.16 30.59 0.16 -5.11 16 3 C 0.26 12.05 1.76 44.24 0.08 12.13 16 4 H 0.03 1.31 5.22 -2.38 -0.01 1.30 16 5 C -0.52 -27.43 9.06 25.60 0.23 -27.20 16 6 H 0.06 3.18 8.02 -2.91 -0.02 3.16 16 7 C 0.03 1.88 5.47 84.65 0.46 2.34 16 8 N -0.93 -54.75 13.96 21.45 0.30 -54.45 16 9 Si 0.92 43.72 26.35 68.60 1.81 45.53 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.46 5.98 99.48 0.59 -10.86 16 13 N -0.72 -27.15 4.94 -461.40 -2.28 -29.43 16 14 C 0.70 25.26 7.05 179.05 1.26 26.53 16 15 O -0.62 -26.75 12.57 -3.98 -0.05 -26.80 16 16 N -0.63 -16.98 2.95 -835.14 -2.46 -19.44 16 17 C 0.12 2.88 6.58 86.41 0.57 3.44 16 18 C 0.12 2.58 6.59 86.41 0.57 3.15 16 19 N -0.59 -12.66 2.94 -947.50 -2.79 -15.44 16 20 C 0.65 15.17 7.74 129.79 1.00 16.18 16 21 O -0.59 -15.96 11.29 19.78 0.22 -15.74 16 22 O -0.36 -7.30 8.52 -55.44 -0.47 -7.78 16 23 C 0.12 1.97 1.13 -10.80 -0.01 1.96 16 24 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 25 C -0.18 -2.88 8.37 71.98 0.60 -2.27 16 26 C -0.14 -1.36 8.85 71.98 0.64 -0.72 16 27 C 0.10 1.89 6.64 86.57 0.57 2.46 16 28 C 0.10 1.97 6.61 86.56 0.57 2.54 16 29 H 0.05 2.02 5.53 -2.39 -0.01 2.00 16 30 H 0.03 1.36 7.83 -2.38 -0.02 1.34 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.05 2.11 6.93 -2.39 -0.02 2.09 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 35 H 0.40 13.13 6.01 -92.71 -0.56 12.58 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 2.54 7.02 -2.39 -0.02 2.53 16 38 H 0.11 2.29 6.99 -2.39 -0.02 2.27 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.32 5.88 -2.38 -0.01 1.31 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.34 5.88 -2.39 -0.01 1.33 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.12 1.82 6.91 -2.38 -0.02 1.80 16 51 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 52 H 0.10 1.93 5.55 -2.39 -0.01 1.92 16 Total: -1.00 -68.93 393.50 2.46 -66.47 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.25 Total: 28.21 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 7.92 Total: 28.87 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -7.23 Total: -118.76 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.30 Total: -50.32 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.81 Total: 45.53 kcal Total: -68.93 2.46 -66.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495908057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.372 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds