Wall clock time and date at job start Wed Apr 1 2020 00:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47077 * 2 1 4 4 H 1.08999 * 109.47336 * 55.00616 * 3 2 1 5 5 C 1.50705 * 109.47048 * 175.00342 * 3 2 1 6 6 H 1.08001 * 120.00219 * 120.00384 * 5 3 2 7 7 C 1.37876 * 119.99890 * 299.99865 * 5 3 2 8 8 N 1.31515 * 119.99941 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00246 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47195 * 89.99276 * 9 7 5 11 11 H 1.48495 * 109.47264 * 209.99573 * 9 7 5 12 12 H 1.48495 * 109.47039 * 329.99922 * 9 7 5 13 13 N 1.46495 * 109.47718 * 295.00190 * 3 2 1 14 14 C 1.34782 * 119.99713 * 84.99754 * 13 3 2 15 15 O 1.21587 * 119.99853 * 5.27982 * 14 13 3 16 16 N 1.34778 * 120.00010 * 185.27823 * 14 13 3 17 17 C 1.46967 * 120.59288 * 354.80608 * 16 14 13 18 18 C 1.53369 * 108.63330 * 235.20353 * 17 16 14 19 19 N 1.46972 * 108.63475 * 310.57723 * 18 17 16 20 20 C 1.34781 * 120.59103 * 235.20830 * 19 18 17 21 21 O 1.21508 * 120.00257 * 359.97438 * 20 19 18 22 22 O 1.34637 * 119.99634 * 179.97438 * 20 19 18 23 23 C 1.45199 * 116.99802 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47387 * 60.00135 * 23 22 20 25 25 C 1.52998 * 109.47173 * 300.00034 * 23 22 20 26 26 C 1.53003 * 109.47057 * 180.02562 * 23 22 20 27 27 C 1.46966 * 118.81269 * 55.47637 * 19 18 17 28 28 C 1.46960 * 120.59322 * 174.77911 * 16 14 13 29 29 H 1.08995 * 109.47779 * 59.99249 * 1 2 3 30 30 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46775 * 299.99667 * 1 2 3 32 32 H 1.09006 * 109.46775 * 240.00333 * 2 1 3 33 33 H 1.08995 * 109.47779 * 120.00751 * 2 1 3 34 34 H 0.97000 * 120.00483 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00532 * 265.00111 * 13 3 2 36 36 H 1.09002 * 109.61085 * 115.46023 * 17 16 14 37 37 H 1.08997 * 109.60781 * 354.94517 * 17 16 14 38 38 H 1.09000 * 109.61307 * 190.83404 * 18 17 16 39 39 H 1.09001 * 109.61590 * 70.31594 * 18 17 16 40 40 H 1.09006 * 109.47028 * 300.00436 * 24 23 22 41 41 H 1.09007 * 109.47206 * 59.99895 * 24 23 22 42 42 H 1.08998 * 109.47949 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.47213 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.47543 * 300.00115 * 25 23 22 45 45 H 1.09003 * 109.47294 * 60.00338 * 25 23 22 46 46 H 1.08994 * 109.47160 * 300.00072 * 26 23 22 47 47 H 1.08998 * 109.46951 * 60.00319 * 26 23 22 48 48 H 1.09000 * 109.47031 * 179.97438 * 26 23 22 49 49 H 1.08998 * 109.60634 * 64.27094 * 27 19 18 50 50 H 1.08996 * 109.61031 * 184.78065 * 27 19 18 51 51 H 1.08997 * 109.61229 * 244.54263 * 28 16 14 52 52 H 1.09001 * 109.61421 * 4.88578 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8794 1.3356 9 14 3.0965 0.1088 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7939 0.2346 3.8750 12 1 1.7879 0.8072 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3045 2.7172 -0.4031 16 7 0.0376 3.1730 -2.5499 17 6 0.9610 3.2192 -3.6923 18 6 1.0450 4.6652 -4.1964 19 7 -0.3199 5.1829 -4.3674 20 6 -0.7173 5.6914 -5.5507 21 8 0.0553 5.7250 -6.4878 22 8 -1.9706 6.1619 -5.6942 23 6 -2.3293 6.6953 -6.9962 24 6 -2.1772 5.6015 -8.0550 25 6 -1.4082 7.8680 -7.3383 26 6 -3.7806 7.1790 -6.9669 27 6 -1.2416 5.1418 -3.2234 28 6 -1.3272 3.6905 -2.7210 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 5.8772 0.4810 2.1122 35 1 2.2719 2.1233 -1.9977 36 1 0.5896 2.5750 -4.4893 37 1 1.9491 2.8835 -3.3777 38 1 1.5679 4.6897 -5.1524 39 1 1.5792 5.2760 -3.4686 40 1 -1.1431 5.2572 -8.0757 41 1 -2.8335 4.7660 -7.8112 42 1 -2.4469 6.0017 -9.0323 43 1 -1.6772 8.2681 -8.3159 44 1 -1.5166 8.6473 -6.5840 45 1 -0.3742 7.5238 -7.3591 46 1 -4.4371 6.3439 -6.7229 47 1 -3.8886 7.9585 -6.2126 48 1 -4.0497 7.5799 -7.9441 49 1 -0.8663 5.7856 -2.4280 50 1 -2.2289 5.4809 -3.5368 51 1 -1.8615 3.0799 -3.4488 52 1 -1.8512 3.6634 -1.7656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495908058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:13 Heat of formation + Delta-G solvation = -89.623923 kcal Electronic energy + Delta-G solvation = -31678.691466 eV Core-core repulsion = 27486.416912 eV Total energy + Delta-G solvation = -4192.274555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14077 -40.00298 -38.20231 -36.67627 -35.37550 -34.59028 -33.70198 -32.42368 -31.71502 -30.96482 -28.09085 -27.72559 -27.67012 -27.06202 -24.24689 -23.47849 -22.59856 -21.70119 -20.59906 -19.68355 -19.18466 -18.62089 -17.35262 -16.89160 -16.45555 -16.27920 -16.04631 -15.54546 -15.42377 -14.88792 -14.82280 -14.71127 -14.21324 -14.02224 -13.78681 -13.68611 -13.40088 -13.03382 -12.87752 -12.63528 -12.48940 -12.35182 -12.21186 -12.19520 -11.94114 -11.81446 -11.72934 -11.71985 -11.60330 -11.54837 -11.34899 -11.07496 -10.86980 -10.63932 -10.62496 -10.20305 -9.92432 -9.65819 -9.36781 -9.32897 -9.19692 -8.75368 -8.39942 -7.95529 -6.20510 -4.22713 1.85884 2.62836 2.99480 3.24126 3.36315 3.41793 3.56927 3.71800 4.32074 4.37781 4.40477 4.45010 4.59044 4.67126 4.78873 4.93286 4.99483 5.13028 5.14615 5.15857 5.22367 5.23031 5.37034 5.37310 5.46229 5.50613 5.55079 5.65057 5.67665 5.69835 5.82627 5.97451 5.99090 5.99868 6.03396 6.16265 6.19265 6.22173 6.54271 6.64854 6.70685 6.84757 6.96332 7.08055 7.16412 7.34547 7.49334 7.55491 8.11816 8.26921 8.64943 8.78743 9.16682 9.41386 10.91545 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.002390 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.965571 B =11714.934028 C =12237.274635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.258 3.742 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.717 5.717 14 C 0.703 3.297 15 O -0.592 6.592 16 N -0.639 5.639 17 C 0.099 3.901 18 C 0.113 3.887 19 N -0.593 5.593 20 C 0.654 3.346 21 O -0.570 6.570 22 O -0.363 6.363 23 C 0.136 3.864 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.141 4.141 27 C 0.098 3.902 28 C 0.119 3.881 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.389 0.611 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.065 0.935 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 10.539 -17.391 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.154 3.846 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.371 5.371 14 C 0.405 3.595 15 O -0.471 6.471 16 N -0.379 5.379 17 C -0.026 4.026 18 C -0.009 4.009 19 N -0.334 5.334 20 C 0.410 3.590 21 O -0.460 6.460 22 O -0.277 6.277 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.026 4.026 28 C -0.006 4.006 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.083 0.917 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.602 10.533 -16.870 25.907 hybrid contribution -0.031 -0.488 0.283 0.565 sum -16.632 10.045 -16.588 25.548 Atomic orbital electron populations 1.21816 0.97047 0.98948 1.02065 1.22303 0.94320 1.00189 1.01004 1.19034 0.95362 0.88062 0.82143 0.93216 1.21040 0.88636 1.39707 1.07778 0.90294 1.24823 0.94862 0.95170 0.97665 1.69866 1.08679 1.44557 1.29847 0.86901 0.81016 0.79920 0.80876 1.20289 1.22223 1.18385 1.45568 1.13851 1.59009 1.18640 1.15949 0.83045 0.78272 0.82250 1.90869 1.55196 1.64473 1.36545 1.47239 1.13188 1.66823 1.10642 1.21992 0.95152 0.96046 0.89378 1.22093 0.81060 0.94335 1.03437 1.46901 1.14365 1.62915 1.09186 1.17947 0.80903 0.77012 0.83180 1.90884 1.54661 1.61496 1.38938 1.86288 1.29819 1.73881 1.37748 1.22066 0.95320 0.93491 0.79234 1.22510 1.05032 0.98354 0.98111 1.22512 1.02328 0.97221 1.01969 1.21858 0.92819 1.02038 1.03062 1.22300 0.94269 0.97916 0.88104 1.21803 0.83476 0.92434 1.02886 0.93182 0.95012 0.92890 0.92397 0.92791 0.92302 0.77528 0.91042 0.88416 0.87470 0.90209 0.89343 0.92183 0.91219 0.91207 0.92205 0.89359 0.91431 0.91464 0.90189 0.90456 0.88168 0.91717 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.58 37.16 0.32 -2.51 16 2 C -0.14 -3.06 5.11 -26.74 -0.14 -3.20 16 3 C 0.26 6.03 1.84 -69.09 -0.13 5.90 16 4 H 0.05 1.30 6.56 -51.93 -0.34 0.96 16 5 C -0.53 -14.18 9.31 -34.44 -0.32 -14.51 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 9 Si 0.88 21.61 24.41 -169.99 -4.15 17.47 16 10 H -0.28 -6.55 6.83 56.52 0.39 -6.17 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.72 -13.92 4.93 -59.81 -0.30 -14.21 16 14 C 0.70 12.94 6.66 -86.91 -0.58 12.36 16 15 O -0.59 -12.79 13.32 5.29 0.07 -12.72 16 16 N -0.64 -8.91 2.95 -177.94 -0.52 -9.43 16 17 C 0.10 1.12 6.56 -3.60 -0.02 1.09 16 18 C 0.11 1.21 6.59 -3.59 -0.02 1.18 16 19 N -0.59 -6.59 2.94 -178.00 -0.52 -7.11 16 20 C 0.65 7.85 7.74 54.06 0.42 8.27 16 21 O -0.57 -7.76 11.29 -19.28 -0.22 -7.98 16 22 O -0.36 -3.86 8.52 -40.32 -0.34 -4.20 16 23 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 24 C -0.18 -1.55 8.37 37.15 0.31 -1.24 16 25 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 26 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 27 C 0.10 0.99 6.64 -3.36 -0.02 0.97 16 28 C 0.12 1.39 6.62 -3.37 -0.02 1.36 16 29 H 0.05 0.98 5.76 -51.93 -0.30 0.69 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.39 6.69 6.01 -40.82 -0.25 6.45 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.08 5.61 -51.93 -0.29 0.78 16 38 H 0.11 1.12 6.99 -51.93 -0.36 0.76 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 0.87 6.91 -51.93 -0.36 0.51 16 51 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.11 1.37 6.99 -51.93 -0.36 1.01 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -32.41 390.47 -7.64 -40.05 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.55 Total: 6.63 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 0.23 Total: 11.07 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.57 Total: -56.20 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.49 Total: -24.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.47 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.41 -7.64 -40.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495908058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.575 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds