Wall clock time and date at job start Wed Apr 1 2020 00:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47077 * 2 1 4 4 H 1.08999 * 109.47336 * 55.00616 * 3 2 1 5 5 C 1.50705 * 109.47048 * 175.00342 * 3 2 1 6 6 H 1.08001 * 120.00219 * 120.00384 * 5 3 2 7 7 C 1.37876 * 119.99890 * 299.99865 * 5 3 2 8 8 N 1.31515 * 119.99941 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00246 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47195 * 89.99276 * 9 7 5 11 11 H 1.48495 * 109.47264 * 209.99573 * 9 7 5 12 12 H 1.48495 * 109.47039 * 329.99922 * 9 7 5 13 13 N 1.46495 * 109.47718 * 295.00190 * 3 2 1 14 14 C 1.34782 * 119.99713 * 84.99754 * 13 3 2 15 15 O 1.21587 * 119.99853 * 5.27982 * 14 13 3 16 16 N 1.34778 * 120.00010 * 185.27823 * 14 13 3 17 17 C 1.46967 * 120.59288 * 354.80608 * 16 14 13 18 18 C 1.53369 * 108.63330 * 235.20353 * 17 16 14 19 19 N 1.46972 * 108.63475 * 310.57723 * 18 17 16 20 20 C 1.34781 * 120.59103 * 235.20830 * 19 18 17 21 21 O 1.21508 * 120.00257 * 359.97438 * 20 19 18 22 22 O 1.34637 * 119.99634 * 179.97438 * 20 19 18 23 23 C 1.45199 * 116.99802 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47387 * 60.00135 * 23 22 20 25 25 C 1.52998 * 109.47173 * 300.00034 * 23 22 20 26 26 C 1.53003 * 109.47057 * 180.02562 * 23 22 20 27 27 C 1.46966 * 118.81269 * 55.47637 * 19 18 17 28 28 C 1.46960 * 120.59322 * 174.77911 * 16 14 13 29 29 H 1.08995 * 109.47779 * 59.99249 * 1 2 3 30 30 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46775 * 299.99667 * 1 2 3 32 32 H 1.09006 * 109.46775 * 240.00333 * 2 1 3 33 33 H 1.08995 * 109.47779 * 120.00751 * 2 1 3 34 34 H 0.97000 * 120.00483 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00532 * 265.00111 * 13 3 2 36 36 H 1.09002 * 109.61085 * 115.46023 * 17 16 14 37 37 H 1.08997 * 109.60781 * 354.94517 * 17 16 14 38 38 H 1.09000 * 109.61307 * 190.83404 * 18 17 16 39 39 H 1.09001 * 109.61590 * 70.31594 * 18 17 16 40 40 H 1.09006 * 109.47028 * 300.00436 * 24 23 22 41 41 H 1.09007 * 109.47206 * 59.99895 * 24 23 22 42 42 H 1.08998 * 109.47949 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.47213 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.47543 * 300.00115 * 25 23 22 45 45 H 1.09003 * 109.47294 * 60.00338 * 25 23 22 46 46 H 1.08994 * 109.47160 * 300.00072 * 26 23 22 47 47 H 1.08998 * 109.46951 * 60.00319 * 26 23 22 48 48 H 1.09000 * 109.47031 * 179.97438 * 26 23 22 49 49 H 1.08998 * 109.60634 * 64.27094 * 27 19 18 50 50 H 1.08996 * 109.61031 * 184.78065 * 27 19 18 51 51 H 1.08997 * 109.61229 * 244.54263 * 28 16 14 52 52 H 1.09001 * 109.61421 * 4.88578 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8794 1.3356 9 14 3.0965 0.1088 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7939 0.2346 3.8750 12 1 1.7879 0.8072 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3045 2.7172 -0.4031 16 7 0.0376 3.1730 -2.5499 17 6 0.9610 3.2192 -3.6923 18 6 1.0450 4.6652 -4.1964 19 7 -0.3199 5.1829 -4.3674 20 6 -0.7173 5.6914 -5.5507 21 8 0.0553 5.7250 -6.4878 22 8 -1.9706 6.1619 -5.6942 23 6 -2.3293 6.6953 -6.9962 24 6 -2.1772 5.6015 -8.0550 25 6 -1.4082 7.8680 -7.3383 26 6 -3.7806 7.1790 -6.9669 27 6 -1.2416 5.1418 -3.2234 28 6 -1.3272 3.6905 -2.7210 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 5.8772 0.4810 2.1122 35 1 2.2719 2.1233 -1.9977 36 1 0.5896 2.5750 -4.4893 37 1 1.9491 2.8835 -3.3777 38 1 1.5679 4.6897 -5.1524 39 1 1.5792 5.2760 -3.4686 40 1 -1.1431 5.2572 -8.0757 41 1 -2.8335 4.7660 -7.8112 42 1 -2.4469 6.0017 -9.0323 43 1 -1.6772 8.2681 -8.3159 44 1 -1.5166 8.6473 -6.5840 45 1 -0.3742 7.5238 -7.3591 46 1 -4.4371 6.3439 -6.7229 47 1 -3.8886 7.9585 -6.2126 48 1 -4.0497 7.5799 -7.9441 49 1 -0.8663 5.7856 -2.4280 50 1 -2.2289 5.4809 -3.5368 51 1 -1.8615 3.0799 -3.4488 52 1 -1.8512 3.6634 -1.7656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495908058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:12 Heat of formation + Delta-G solvation = -111.215780 kcal Electronic energy + Delta-G solvation = -31679.627759 eV Core-core repulsion = 27486.416912 eV Total energy + Delta-G solvation = -4193.210848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04495 -41.28505 -39.24305 -37.74255 -36.98037 -35.56432 -34.66070 -34.31685 -33.14660 -32.15861 -29.62218 -28.47323 -28.32601 -28.25674 -25.20481 -24.79950 -24.16011 -22.78435 -21.97244 -20.94233 -20.43128 -19.71569 -18.63370 -18.04352 -17.73111 -17.51884 -17.31308 -16.90506 -16.40965 -16.23990 -15.69315 -15.60685 -15.52931 -15.24523 -14.94366 -14.91105 -14.66674 -14.43732 -14.07822 -13.74662 -13.63305 -13.51036 -13.24144 -13.07927 -12.97846 -12.93961 -12.83027 -12.77452 -12.62942 -12.48082 -12.46350 -12.42518 -12.36006 -12.17364 -11.83325 -11.37878 -11.36424 -11.19643 -11.05533 -11.00152 -10.83249 -10.37549 -9.82071 -9.28592 -8.35601 -6.40565 1.01763 1.29126 1.37568 1.47569 1.71565 1.78022 2.26608 2.28538 2.76559 3.00573 3.07158 3.75436 3.77461 3.81486 3.83857 3.98471 4.04206 4.11326 4.25446 4.28197 4.35404 4.38914 4.47540 4.52951 4.62496 4.65274 4.69058 4.75920 4.80301 4.80505 4.86732 4.89679 4.91821 4.92587 5.02940 5.12808 5.14035 5.23544 5.28230 5.31803 5.38879 5.43613 5.46729 5.52628 5.54000 5.72393 5.94144 6.24131 6.28812 6.61870 7.14865 7.23033 7.25404 7.72382 8.79509 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.002390 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.965571 B =11714.934028 C =12237.274635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 C 0.267 3.733 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.718 5.718 14 C 0.703 3.297 15 O -0.625 6.625 16 N -0.631 5.631 17 C 0.101 3.899 18 C 0.118 3.882 19 N -0.594 5.594 20 C 0.652 3.348 21 O -0.589 6.589 22 O -0.365 6.365 23 C 0.125 3.875 24 C -0.179 4.179 25 C -0.179 4.179 26 C -0.136 4.136 27 C 0.106 3.894 28 C 0.119 3.881 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.399 0.601 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.073 0.927 50 H 0.119 0.881 51 H 0.081 0.919 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.793 10.556 -18.729 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.176 4.176 3 C 0.162 3.838 4 H 0.040 0.960 5 C -0.568 4.568 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.373 5.373 14 C 0.405 3.595 15 O -0.506 6.506 16 N -0.370 5.370 17 C -0.023 4.023 18 C -0.005 4.005 19 N -0.335 5.335 20 C 0.408 3.592 21 O -0.480 6.480 22 O -0.279 6.279 23 C 0.089 3.911 24 C -0.236 4.236 25 C -0.237 4.237 26 C -0.193 4.193 27 C -0.017 4.017 28 C -0.005 4.005 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.092 0.908 50 H 0.137 0.863 51 H 0.099 0.901 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.993 10.571 -18.268 28.394 hybrid contribution 0.699 -0.384 0.563 0.976 sum -18.295 10.186 -17.705 27.421 Atomic orbital electron populations 1.21683 0.95251 1.00433 1.01327 1.22215 0.95841 0.98652 1.00917 1.18634 0.92936 0.89222 0.83031 0.95997 1.21277 0.90355 1.38359 1.06851 0.92596 1.25527 0.95706 0.95949 0.99833 1.69974 1.10252 1.46244 1.30859 0.86045 0.79381 0.79949 0.78307 1.18573 1.22256 1.18376 1.45296 1.14830 1.59414 1.17762 1.15980 0.82244 0.78160 0.83088 1.90847 1.55916 1.65721 1.38164 1.47239 1.14404 1.65530 1.09796 1.22127 0.94760 0.96802 0.88640 1.22031 0.81172 0.93778 1.03488 1.46963 1.14498 1.62746 1.09257 1.18064 0.81216 0.76896 0.83027 1.90885 1.55323 1.62203 1.39612 1.86297 1.28871 1.73694 1.39049 1.22414 0.96837 0.93433 0.78454 1.22461 1.03360 0.98519 0.99241 1.22468 1.00755 0.97218 1.03217 1.21879 0.90755 1.02189 1.04431 1.22263 0.95053 0.96708 0.87648 1.21953 0.82089 0.93586 1.02876 0.93091 0.92322 0.94456 0.91428 0.93839 0.92146 0.76332 0.89531 0.88276 0.87099 0.90419 0.91944 0.91984 0.89228 0.89168 0.92128 0.92010 0.91119 0.91250 0.88089 0.90823 0.86305 0.90066 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.58 71.98 0.62 -4.31 16 2 C -0.14 -5.86 5.11 30.59 0.16 -5.70 16 3 C 0.27 12.46 1.84 44.25 0.08 12.55 16 4 H 0.02 1.16 6.56 -2.39 -0.02 1.15 16 5 C -0.53 -28.57 9.31 25.60 0.24 -28.33 16 6 H 0.06 3.20 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.65 5.45 84.65 0.46 2.12 16 8 N -0.93 -55.81 13.96 21.45 0.30 -55.51 16 9 Si 0.94 44.61 24.41 68.60 1.67 46.28 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.27 6.53 99.48 0.65 -11.62 16 13 N -0.72 -27.60 4.93 -461.41 -2.28 -29.88 16 14 C 0.70 25.40 6.66 179.05 1.19 26.59 16 15 O -0.63 -26.79 13.32 -3.99 -0.05 -26.84 16 16 N -0.63 -16.76 2.95 -835.14 -2.46 -19.22 16 17 C 0.10 2.11 6.56 86.41 0.57 2.68 16 18 C 0.12 2.39 6.59 86.41 0.57 2.95 16 19 N -0.59 -12.36 2.94 -947.47 -2.79 -15.15 16 20 C 0.65 14.90 7.74 129.79 1.00 15.90 16 21 O -0.59 -15.76 11.29 19.82 0.22 -15.53 16 22 O -0.36 -7.15 8.52 -55.46 -0.47 -7.62 16 23 C 0.12 1.92 1.13 -10.80 -0.01 1.91 16 24 C -0.18 -2.73 8.37 71.98 0.60 -2.13 16 25 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 26 C -0.14 -1.27 8.85 71.98 0.64 -0.63 16 27 C 0.11 1.97 6.64 86.57 0.57 2.55 16 28 C 0.12 2.57 6.62 86.57 0.57 3.14 16 29 H 0.05 1.91 5.76 -2.39 -0.01 1.90 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.52 7.92 -2.38 -0.02 1.50 16 32 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.04 1.94 3.21 -2.39 -0.01 1.94 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.40 13.57 6.01 -92.71 -0.56 13.01 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 2.07 5.61 -2.39 -0.01 2.06 16 38 H 0.11 2.22 6.99 -2.39 -0.02 2.20 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.31 5.88 -2.38 -0.01 1.30 16 41 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.12 1.80 6.91 -2.39 -0.02 1.78 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.10 2.37 6.99 -2.39 -0.02 2.35 16 Total: -1.00 -70.30 390.47 2.30 -68.00 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.28 Total: 28.38 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 7.87 Total: 27.09 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -7.22 Total: -119.76 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.30 Total: -50.00 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.67 Total: 46.28 kcal Total: -70.30 2.30 -68.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495908058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.213 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds