Wall clock time and date at job start Wed Apr 1 2020 00:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 N 1.36594 * 111.00147 * 2 1 4 4 C 1.34774 * 120.00461 * 243.95769 * 3 2 1 5 5 O 1.21283 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00341 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47113 * 299.99730 * 6 4 3 8 8 C 1.53001 * 109.47234 * 60.00279 * 6 4 3 9 9 C 1.52997 * 109.47342 * 184.74514 * 8 6 4 10 10 C 1.50699 * 109.47214 * 184.86685 * 9 8 6 11 11 H 1.07999 * 119.99971 * 5.00875 * 10 9 8 12 12 C 1.37880 * 120.00075 * 184.99925 * 10 9 8 13 13 N 1.31512 * 119.99797 * 184.99354 * 12 10 9 14 14 Si 1.86797 * 120.00071 * 4.98384 * 12 10 9 15 15 H 1.48500 * 109.47034 * 94.84537 * 14 12 10 16 16 H 1.48501 * 109.47353 * 214.84552 * 14 12 10 17 17 H 1.48504 * 109.47074 * 334.84970 * 14 12 10 18 18 N 1.46502 * 109.47219 * 179.97438 * 6 4 3 19 19 C 1.34779 * 119.99591 * 81.61301 * 18 6 4 20 20 O 1.21515 * 120.00493 * 4.97751 * 19 18 6 21 21 O 1.34638 * 120.00157 * 184.97775 * 19 18 6 22 22 C 1.45189 * 117.00426 * 174.34471 * 21 19 18 23 23 C 1.52999 * 109.47303 * 62.49167 * 22 21 19 24 24 C 1.52997 * 109.47502 * 182.49063 * 22 21 19 25 25 C 1.53004 * 109.47154 * 302.48892 * 22 21 19 26 26 C 1.46896 * 111.00361 * 123.96136 * 2 1 3 27 27 C 1.53001 * 117.49737 * 244.79268 * 26 2 1 28 28 C 1.53001 * 117.50033 * 176.13126 * 26 2 1 29 29 H 1.08997 * 109.47364 * 59.99538 * 1 2 3 30 30 H 1.09004 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46907 * 299.99495 * 1 2 3 32 32 H 0.97002 * 119.99980 * 63.95578 * 3 2 1 33 33 H 1.09005 * 109.46691 * 304.74439 * 8 6 4 34 34 H 1.09001 * 109.47460 * 64.73845 * 8 6 4 35 35 H 1.08998 * 109.47426 * 304.87253 * 9 8 6 36 36 H 1.09004 * 109.47053 * 64.87300 * 9 8 6 37 37 H 0.97003 * 119.99797 * 180.02562 * 13 12 10 38 38 H 0.96994 * 120.00460 * 261.60666 * 18 6 4 39 39 H 1.08997 * 109.47216 * 64.48315 * 23 22 21 40 40 H 1.09000 * 109.47595 * 184.48883 * 23 22 21 41 41 H 1.09007 * 109.46677 * 304.48525 * 23 22 21 42 42 H 1.09002 * 109.47204 * 60.00055 * 24 22 21 43 43 H 1.08998 * 109.47474 * 180.02562 * 24 22 21 44 44 H 1.09000 * 109.47171 * 300.00055 * 24 22 21 45 45 H 1.09001 * 109.46958 * 60.00251 * 25 22 21 46 46 H 1.09004 * 109.47230 * 179.97438 * 25 22 21 47 47 H 1.08989 * 109.47455 * 299.99968 * 25 22 21 48 48 H 1.09000 * 115.55082 * 30.45522 * 26 2 1 49 49 H 1.09003 * 117.49853 * 359.97438 * 27 26 2 50 50 H 1.09001 * 117.49871 * 145.02026 * 27 26 2 51 51 H 1.08999 * 117.49923 * 214.97532 * 28 26 2 52 52 H 1.08993 * 117.49789 * 359.97436 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 7 1.9585 1.2752 0.0000 4 6 2.6784 1.7208 -1.0486 5 8 2.8912 0.9896 -1.9926 6 6 3.2190 3.1275 -1.0483 7 1 2.3923 3.8343 -0.9772 8 6 4.1543 3.3142 0.1480 9 6 4.6099 4.7731 0.2164 10 6 5.6230 4.9318 1.3207 11 1 5.9733 4.0647 1.8608 12 6 6.1029 6.1840 1.6413 13 7 7.0579 6.3129 2.5363 14 14 5.3967 7.6974 0.8044 15 1 4.3240 8.2766 1.6523 16 1 6.4720 8.7031 0.6109 17 1 4.8327 7.3154 -0.5152 18 7 3.9605 3.3659 -2.2891 19 6 3.2990 3.6890 -3.4180 20 8 2.0979 3.8713 -3.3875 21 8 3.9688 3.8099 -4.5797 22 6 3.1779 4.0351 -5.7763 23 6 2.4291 5.3633 -5.6503 24 6 4.1005 4.0836 -6.9958 25 6 2.1707 2.8956 -5.9439 26 6 1.9955 -0.7661 1.1374 27 6 2.7883 -0.0003 2.1985 28 6 3.5128 -0.9394 1.2308 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7880 1.8602 0.7548 33 1 3.6263 3.0550 1.0658 34 1 5.0238 2.6669 0.0340 35 1 5.0609 5.0579 -0.7342 36 1 3.7506 5.4131 0.4170 37 1 7.3952 7.1938 2.7622 38 1 4.9276 3.2914 -2.2982 39 1 3.1467 6.1827 -5.6110 40 1 1.7745 5.4946 -6.5119 41 1 1.8324 5.3588 -4.7381 42 1 4.6340 3.1373 -7.0857 43 1 3.5069 4.2530 -7.8941 44 1 4.8181 4.8953 -6.8765 45 1 1.5133 2.8610 -5.0751 46 1 1.5766 3.0648 -6.8420 47 1 2.7041 1.9494 -6.0337 48 1 1.3726 -1.5944 1.4750 49 1 2.9195 1.0719 2.0524 50 1 2.6873 -0.3252 3.2341 51 1 3.8881 -1.8816 1.6301 52 1 4.1202 -0.4853 0.4480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496818012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:06 Heat of formation + Delta-G solvation = -55.503205 kcal Electronic energy + Delta-G solvation = -31937.741611 eV Core-core repulsion = 27746.946641 eV Total energy + Delta-G solvation = -4190.794969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79750 -40.13949 -38.33414 -36.92150 -35.40503 -34.69879 -34.04868 -33.05744 -31.85335 -30.94734 -27.98439 -27.41755 -27.34466 -25.47184 -24.04930 -22.73786 -22.47527 -21.31965 -20.56798 -20.03651 -19.86309 -18.05748 -17.75314 -17.07249 -16.73110 -16.47228 -16.36179 -15.72705 -15.26721 -14.65042 -14.46637 -14.41259 -14.24627 -14.00296 -13.58070 -13.50959 -13.47377 -13.06358 -12.95458 -12.71043 -12.51335 -12.35615 -12.18335 -11.96537 -11.87801 -11.82242 -11.59103 -11.46378 -11.32177 -11.23623 -11.14756 -11.00968 -10.50661 -10.39786 -10.27170 -10.22324 -9.91332 -9.86510 -9.73563 -9.33939 -9.23920 -8.83829 -8.64836 -8.58823 -6.13610 -4.12753 2.20177 2.66960 2.82945 3.15682 3.24974 3.34522 3.38496 3.74623 4.07797 4.32406 4.37894 4.73122 4.73317 4.77635 4.80937 4.88600 4.91787 5.01217 5.13062 5.19419 5.20773 5.25361 5.37369 5.43744 5.50789 5.52200 5.59654 5.64344 5.65477 5.67592 5.75796 5.86207 5.87495 5.94803 5.96724 6.11726 6.18047 6.28559 6.32992 6.50717 6.54801 6.64375 6.69599 7.08559 7.20714 7.27775 7.43646 7.63119 7.68746 8.40865 8.56871 8.62974 8.90566 9.48745 10.99277 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.005743 B = 0.005493 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4874.263294 B = 5096.499543 C = 9187.109135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.265 5.265 3 N -0.582 5.582 4 C 0.522 3.478 5 O -0.508 6.508 6 C 0.150 3.850 7 H 0.114 0.886 8 C -0.106 4.106 9 C -0.009 4.009 10 C -0.526 4.526 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.876 3.124 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.264 1.264 18 N -0.681 5.681 19 C 0.662 3.338 20 O -0.573 6.573 21 O -0.363 6.363 22 C 0.137 3.863 23 C -0.184 4.184 24 C -0.140 4.140 25 C -0.182 4.182 26 C -0.010 4.010 27 C -0.204 4.204 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.384 0.616 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.125 0.875 49 H 0.101 0.899 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 -9.913 -9.777 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.080 5.080 3 N -0.331 5.331 4 C 0.307 3.693 5 O -0.379 6.379 6 C 0.041 3.959 7 H 0.132 0.868 8 C -0.144 4.144 9 C -0.047 4.047 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.703 3.297 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.188 1.188 18 N -0.339 5.339 19 C 0.416 3.584 20 O -0.463 6.463 21 O -0.277 6.277 22 C 0.100 3.900 23 C -0.241 4.241 24 C -0.197 4.197 25 C -0.239 4.239 26 C -0.119 4.119 27 C -0.243 4.243 28 C -0.195 4.195 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.224 0.776 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.143 0.857 49 H 0.120 0.880 50 H 0.116 0.884 51 H 0.117 0.883 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.920 -10.406 -10.937 19.235 hybrid contribution -0.365 1.368 0.874 1.664 sum -12.285 -9.038 -10.063 18.272 Atomic orbital electron populations 1.22892 0.86314 1.03037 1.01698 1.62790 1.07293 0.98594 1.39277 1.45534 1.56314 1.08956 1.22291 1.21287 0.76996 0.89598 0.81398 1.90667 1.56113 1.57375 1.33720 1.21033 0.97376 0.92570 0.84946 0.86787 1.21863 0.97744 1.01963 0.92868 1.19593 0.96695 0.90323 0.98062 1.21034 1.23168 0.94797 1.17333 0.90846 1.24992 0.94402 0.99018 0.94709 1.69914 1.26976 1.23789 1.32991 0.86844 0.79034 0.83118 0.80730 1.20347 1.21309 1.18811 1.44244 1.10939 1.72467 1.06213 1.17927 0.83825 0.75705 0.80957 1.90847 1.13486 1.55972 1.85998 1.86291 1.41107 1.85226 1.15111 1.22010 0.90815 0.95886 0.81299 1.22528 1.01171 0.95723 1.04652 1.21852 0.99641 1.03377 0.94865 1.22490 0.99813 0.97569 1.04015 1.23277 0.95464 1.00241 0.92926 1.23396 1.05494 0.99462 0.95964 1.23002 0.93647 1.01103 1.01745 0.90514 0.89932 0.94476 0.77614 0.90506 0.90863 0.96131 0.96564 0.92638 0.74987 0.92190 0.91468 0.89197 0.91483 0.90366 0.91446 0.89415 0.91482 0.92116 0.85707 0.88048 0.88385 0.88315 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.94 60.06 0.60 0.68 16 2 N -0.26 -3.33 4.81 -114.01 -0.55 -3.88 16 3 N -0.58 -7.66 3.56 31.22 0.11 -7.55 16 4 C 0.52 8.42 7.27 -10.99 -0.08 8.34 16 5 O -0.51 -9.93 16.53 5.55 0.09 -9.84 16 6 C 0.15 2.39 2.38 -69.08 -0.16 2.23 16 7 H 0.11 1.82 7.62 -51.93 -0.40 1.42 16 8 C -0.11 -1.79 4.62 -26.73 -0.12 -1.91 16 9 C -0.01 -0.20 3.90 -27.89 -0.11 -0.31 16 10 C -0.53 -13.80 9.65 -34.44 -0.33 -14.13 16 11 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 14 Si 0.88 20.91 27.42 -169.99 -4.66 16.25 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.26 -6.10 6.65 56.52 0.38 -5.73 16 18 N -0.68 -11.37 4.06 -59.86 -0.24 -11.61 16 19 C 0.66 11.63 7.69 54.06 0.42 12.04 16 20 O -0.57 -10.73 11.59 -19.28 -0.22 -10.95 16 21 O -0.36 -5.83 9.94 -40.32 -0.40 -6.23 16 22 C 0.14 1.80 1.13 -90.62 -0.10 1.70 16 23 C -0.18 -2.33 8.47 37.16 0.31 -2.01 16 24 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 25 C -0.18 -2.36 8.33 37.16 0.31 -2.05 16 26 C -0.01 -0.11 6.14 -67.71 -0.42 -0.52 16 27 C -0.20 -2.15 9.74 -26.69 -0.26 -2.41 16 28 C -0.16 -1.81 10.28 -26.69 -0.27 -2.09 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.38 4.33 6.86 -185.16 -1.27 3.06 16 33 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.45 7.19 -51.93 -0.37 0.07 16 36 H 0.02 0.34 7.14 -51.93 -0.37 -0.03 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.41 6.51 8.62 -40.82 -0.35 6.16 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.37 5.78 -51.92 -0.30 1.07 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.38 5.90 -51.93 -0.31 1.08 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.79 8.14 -51.94 -0.42 0.37 16 48 H 0.13 1.06 8.02 -51.93 -0.42 0.64 16 49 H 0.10 1.16 6.10 -51.93 -0.32 0.85 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 417.22 15.07 6.29 6.29 Total: -1.00 -33.55 417.22 -8.78 -42.32 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -9.97 Total: 10.66 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 0.01 Total: 0.34 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.09 Total: -48.84 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.53 Total: -27.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.66 Total: 16.25 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.55 -8.78 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496818012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.180 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds