Wall clock time and date at job start Wed Apr 1 2020 00:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 N 1.36594 * 111.00147 * 2 1 4 4 C 1.34774 * 120.00461 * 243.95769 * 3 2 1 5 5 O 1.21283 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00341 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47113 * 299.99730 * 6 4 3 8 8 C 1.53001 * 109.47234 * 60.00279 * 6 4 3 9 9 C 1.52997 * 109.47342 * 184.74514 * 8 6 4 10 10 C 1.50699 * 109.47214 * 184.86685 * 9 8 6 11 11 H 1.07999 * 119.99971 * 5.00875 * 10 9 8 12 12 C 1.37880 * 120.00075 * 184.99925 * 10 9 8 13 13 N 1.31512 * 119.99797 * 184.99354 * 12 10 9 14 14 Si 1.86797 * 120.00071 * 4.98384 * 12 10 9 15 15 H 1.48500 * 109.47034 * 94.84537 * 14 12 10 16 16 H 1.48501 * 109.47353 * 214.84552 * 14 12 10 17 17 H 1.48504 * 109.47074 * 334.84970 * 14 12 10 18 18 N 1.46502 * 109.47219 * 179.97438 * 6 4 3 19 19 C 1.34779 * 119.99591 * 81.61301 * 18 6 4 20 20 O 1.21515 * 120.00493 * 4.97751 * 19 18 6 21 21 O 1.34638 * 120.00157 * 184.97775 * 19 18 6 22 22 C 1.45189 * 117.00426 * 174.34471 * 21 19 18 23 23 C 1.52999 * 109.47303 * 62.49167 * 22 21 19 24 24 C 1.52997 * 109.47502 * 182.49063 * 22 21 19 25 25 C 1.53004 * 109.47154 * 302.48892 * 22 21 19 26 26 C 1.46896 * 111.00361 * 123.96136 * 2 1 3 27 27 C 1.53001 * 117.49737 * 244.79268 * 26 2 1 28 28 C 1.53001 * 117.50033 * 176.13126 * 26 2 1 29 29 H 1.08997 * 109.47364 * 59.99538 * 1 2 3 30 30 H 1.09004 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46907 * 299.99495 * 1 2 3 32 32 H 0.97002 * 119.99980 * 63.95578 * 3 2 1 33 33 H 1.09005 * 109.46691 * 304.74439 * 8 6 4 34 34 H 1.09001 * 109.47460 * 64.73845 * 8 6 4 35 35 H 1.08998 * 109.47426 * 304.87253 * 9 8 6 36 36 H 1.09004 * 109.47053 * 64.87300 * 9 8 6 37 37 H 0.97003 * 119.99797 * 180.02562 * 13 12 10 38 38 H 0.96994 * 120.00460 * 261.60666 * 18 6 4 39 39 H 1.08997 * 109.47216 * 64.48315 * 23 22 21 40 40 H 1.09000 * 109.47595 * 184.48883 * 23 22 21 41 41 H 1.09007 * 109.46677 * 304.48525 * 23 22 21 42 42 H 1.09002 * 109.47204 * 60.00055 * 24 22 21 43 43 H 1.08998 * 109.47474 * 180.02562 * 24 22 21 44 44 H 1.09000 * 109.47171 * 300.00055 * 24 22 21 45 45 H 1.09001 * 109.46958 * 60.00251 * 25 22 21 46 46 H 1.09004 * 109.47230 * 179.97438 * 25 22 21 47 47 H 1.08989 * 109.47455 * 299.99968 * 25 22 21 48 48 H 1.09000 * 115.55082 * 30.45522 * 26 2 1 49 49 H 1.09003 * 117.49853 * 359.97438 * 27 26 2 50 50 H 1.09001 * 117.49871 * 145.02026 * 27 26 2 51 51 H 1.08999 * 117.49923 * 214.97532 * 28 26 2 52 52 H 1.08993 * 117.49789 * 359.97436 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 7 1.9585 1.2752 0.0000 4 6 2.6784 1.7208 -1.0486 5 8 2.8912 0.9896 -1.9926 6 6 3.2190 3.1275 -1.0483 7 1 2.3923 3.8343 -0.9772 8 6 4.1543 3.3142 0.1480 9 6 4.6099 4.7731 0.2164 10 6 5.6230 4.9318 1.3207 11 1 5.9733 4.0647 1.8608 12 6 6.1029 6.1840 1.6413 13 7 7.0579 6.3129 2.5363 14 14 5.3967 7.6974 0.8044 15 1 4.3240 8.2766 1.6523 16 1 6.4720 8.7031 0.6109 17 1 4.8327 7.3154 -0.5152 18 7 3.9605 3.3659 -2.2891 19 6 3.2990 3.6890 -3.4180 20 8 2.0979 3.8713 -3.3875 21 8 3.9688 3.8099 -4.5797 22 6 3.1779 4.0351 -5.7763 23 6 2.4291 5.3633 -5.6503 24 6 4.1005 4.0836 -6.9958 25 6 2.1707 2.8956 -5.9439 26 6 1.9955 -0.7661 1.1374 27 6 2.7883 -0.0003 2.1985 28 6 3.5128 -0.9394 1.2308 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7880 1.8602 0.7548 33 1 3.6263 3.0550 1.0658 34 1 5.0238 2.6669 0.0340 35 1 5.0609 5.0579 -0.7342 36 1 3.7506 5.4131 0.4170 37 1 7.3952 7.1938 2.7622 38 1 4.9276 3.2914 -2.2982 39 1 3.1467 6.1827 -5.6110 40 1 1.7745 5.4946 -6.5119 41 1 1.8324 5.3588 -4.7381 42 1 4.6340 3.1373 -7.0857 43 1 3.5069 4.2530 -7.8941 44 1 4.8181 4.8953 -6.8765 45 1 1.5133 2.8610 -5.0751 46 1 1.5766 3.0648 -6.8420 47 1 2.7041 1.9494 -6.0337 48 1 1.3726 -1.5944 1.4750 49 1 2.9195 1.0719 2.0524 50 1 2.6873 -0.3252 3.2341 51 1 3.8881 -1.8816 1.6301 52 1 4.1202 -0.4853 0.4480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496818012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:05 Heat of formation + Delta-G solvation = -78.018118 kcal Electronic energy + Delta-G solvation = -31938.717931 eV Core-core repulsion = 27746.946641 eV Total energy + Delta-G solvation = -4191.771289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04909 -41.26946 -39.44605 -38.14135 -36.85683 -35.70196 -35.29716 -34.78836 -33.22935 -32.34548 -29.51369 -28.35485 -28.28210 -26.53859 -25.56148 -23.86420 -23.42203 -22.59555 -21.99919 -21.23708 -21.05534 -19.34461 -19.14982 -18.61137 -17.93643 -17.64906 -17.46726 -16.95837 -16.44134 -16.32507 -15.84050 -15.49746 -15.45860 -15.21538 -14.88268 -14.70876 -14.66528 -14.45560 -14.27895 -13.82782 -13.64607 -13.34230 -13.17041 -13.12529 -13.02166 -12.91765 -12.85458 -12.72298 -12.53347 -12.44267 -12.30944 -12.10512 -11.96400 -11.83412 -11.76867 -11.39814 -11.37152 -11.34268 -11.18199 -11.11860 -10.71010 -10.37587 -10.16376 -9.55013 -8.26792 -6.29321 1.01611 1.36372 1.40364 1.50515 1.54253 1.56666 1.87988 2.37292 2.86146 3.09890 3.11941 3.20214 3.55926 3.76429 3.78720 3.81711 3.95989 3.96109 4.00638 4.01527 4.14451 4.41007 4.43238 4.50622 4.56142 4.62205 4.66032 4.72698 4.75512 4.76923 4.77481 4.84358 4.88414 4.90524 4.94387 5.01756 5.05766 5.17872 5.20945 5.29920 5.36920 5.38607 5.48554 5.54950 5.66165 5.81283 6.14478 6.29106 6.31002 6.35278 6.79091 7.29753 7.35274 7.44979 8.89413 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.005743 B = 0.005493 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4874.263294 B = 5096.499543 C = 9187.109135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.293 5.293 3 N -0.569 5.569 4 C 0.525 3.475 5 O -0.546 6.546 6 C 0.159 3.841 7 H 0.119 0.881 8 C -0.091 4.091 9 C -0.006 4.006 10 C -0.524 4.524 11 H 0.041 0.959 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.939 3.061 15 H -0.268 1.268 16 H -0.289 1.289 17 H -0.250 1.250 18 N -0.684 5.684 19 C 0.657 3.343 20 O -0.588 6.588 21 O -0.371 6.371 22 C 0.122 3.878 23 C -0.179 4.179 24 C -0.135 4.135 25 C -0.176 4.176 26 C -0.002 4.002 27 C -0.199 4.199 28 C -0.174 4.174 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.394 0.606 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.155 0.845 49 H 0.089 0.911 50 H 0.118 0.882 51 H 0.116 0.884 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -9.984 -10.800 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.109 5.109 3 N -0.317 5.317 4 C 0.311 3.689 5 O -0.421 6.421 6 C 0.049 3.951 7 H 0.136 0.864 8 C -0.129 4.129 9 C -0.043 4.043 10 C -0.562 4.562 11 H 0.060 0.940 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.215 1.215 17 H -0.174 1.174 18 N -0.343 5.343 19 C 0.411 3.589 20 O -0.479 6.479 21 O -0.286 6.286 22 C 0.086 3.914 23 C -0.236 4.236 24 C -0.192 4.192 25 C -0.233 4.233 26 C -0.110 4.110 27 C -0.238 4.238 28 C -0.212 4.212 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.172 0.828 49 H 0.107 0.893 50 H 0.136 0.864 51 H 0.135 0.865 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.840 -10.482 -11.940 21.071 hybrid contribution 0.227 1.295 1.203 1.782 sum -13.614 -9.187 -10.736 19.621 Atomic orbital electron populations 1.22923 0.84428 1.04578 1.01772 1.62744 1.09055 0.98119 1.40950 1.45311 1.55110 1.09665 1.21583 1.21196 0.76988 0.89208 0.81539 1.90647 1.57907 1.58201 1.35337 1.20910 0.97029 0.92879 0.84251 0.86377 1.21639 0.97987 0.99005 0.94263 1.19503 0.95582 0.93265 0.95976 1.21370 1.23477 0.93624 1.17735 0.94020 1.25842 0.94793 1.02365 0.95523 1.70056 1.28952 1.24551 1.35219 0.85834 0.78370 0.79199 0.80295 1.19344 1.21497 1.17376 1.44327 1.11153 1.72359 1.06414 1.18077 0.83751 0.75590 0.81449 1.90836 1.14099 1.56669 1.86335 1.86305 1.41856 1.85018 1.15428 1.22473 0.91639 0.96095 0.81207 1.22480 1.01202 0.95499 1.04441 1.21889 0.99529 1.03539 0.94210 1.22429 0.99511 0.97393 1.03955 1.23431 0.95008 1.00538 0.92018 1.23425 1.04854 0.98623 0.96896 1.23005 0.94355 1.02144 1.01706 0.92034 0.87704 0.92720 0.76382 0.88760 0.91471 0.96189 0.95736 0.92628 0.74737 0.91947 0.88759 0.92010 0.91470 0.87460 0.91223 0.92499 0.88519 0.92717 0.82751 0.89268 0.86412 0.86547 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.94 127.69 1.27 1.45 16 2 N -0.29 -7.00 4.81 -514.63 -2.47 -9.47 16 3 N -0.57 -14.56 3.56 -173.53 -0.62 -15.17 16 4 C 0.53 16.98 7.27 87.66 0.64 17.62 16 5 O -0.55 -21.77 16.53 -3.04 -0.05 -21.82 16 6 C 0.16 5.02 2.38 44.24 0.11 5.13 16 7 H 0.12 3.67 7.62 -2.39 -0.02 3.65 16 8 C -0.09 -3.03 4.62 30.59 0.14 -2.89 16 9 C -0.01 -0.24 3.90 29.85 0.12 -0.12 16 10 C -0.52 -27.81 9.65 25.60 0.25 -27.56 16 11 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 12 C 0.01 0.67 5.47 84.66 0.46 1.13 16 13 N -0.95 -57.19 13.96 21.45 0.30 -56.90 16 14 Si 0.94 42.84 27.42 68.60 1.88 44.72 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.25 -10.77 6.65 99.48 0.66 -10.11 16 18 N -0.68 -23.00 4.06 -573.71 -2.33 -25.33 16 19 C 0.66 23.21 7.69 129.79 1.00 24.21 16 20 O -0.59 -22.22 11.59 19.79 0.23 -21.99 16 21 O -0.37 -11.88 9.94 -55.47 -0.55 -12.43 16 22 C 0.12 3.06 1.13 -10.79 -0.01 3.05 16 23 C -0.18 -4.28 8.47 71.98 0.61 -3.67 16 24 C -0.13 -2.39 8.85 71.98 0.64 -1.75 16 25 C -0.18 -4.41 8.33 71.98 0.60 -3.81 16 26 C 0.00 -0.03 6.14 44.92 0.28 0.25 16 27 C -0.20 -3.87 9.74 30.62 0.30 -3.58 16 28 C -0.17 -3.90 10.28 30.62 0.31 -3.58 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.38 8.11 -2.38 -0.02 1.36 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.39 8.39 6.86 -215.50 -1.48 6.91 16 33 H 0.09 2.80 7.15 -2.38 -0.02 2.78 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.02 0.85 7.19 -2.39 -0.02 0.83 16 36 H 0.02 1.00 7.14 -2.39 -0.02 0.98 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.42 13.29 8.62 -92.71 -0.80 12.49 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.85 5.78 -2.38 -0.01 1.84 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.80 5.90 -2.39 -0.01 1.79 16 46 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.16 2.07 8.02 -2.39 -0.02 2.05 16 49 H 0.09 1.95 6.10 -2.39 -0.01 1.93 16 50 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -74.57 417.22 1.69 -72.88 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.40 Total: 39.63 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.70 Total: 5.87 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -5.12 Total: -106.87 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.37 Total: -56.24 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -74.57 1.69 -72.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496818012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.136 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds