Wall clock time and date at job start Wed Apr 1 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46960 * 2 1 4 4 C 1.53003 * 109.46998 * 240.00372 * 2 1 3 5 5 O 1.45192 * 109.47605 * 120.00232 * 2 1 3 6 6 C 1.34642 * 117.00159 * 59.99832 * 5 2 1 7 7 O 1.21507 * 119.99757 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00012 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99707 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47159 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47270 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47226 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99826 * 169.99824 * 12 11 10 14 14 C 1.53243 * 109.33672 * 187.25448 * 13 12 11 15 15 N 1.47076 * 108.52280 * 306.17389 * 14 13 12 16 16 C 1.34777 * 120.88062 * 231.18540 * 15 14 13 17 17 O 1.21687 * 120.00006 * 5.22924 * 16 15 14 18 18 C 1.46376 * 120.00313 * 185.22734 * 16 15 14 19 19 H 1.07997 * 119.99552 * 354.99977 * 18 16 15 20 20 C 1.40044 * 120.00321 * 175.00114 * 18 16 15 21 21 N 1.30673 * 119.99689 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00192 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47087 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47042 * 299.99758 * 22 20 18 25 25 H 1.48503 * 109.47023 * 59.99987 * 22 20 18 26 26 C 1.47077 * 118.23996 * 51.45605 * 15 14 13 27 27 C 1.46898 * 111.00153 * 294.30122 * 12 11 10 28 28 H 1.08996 * 109.47316 * 299.99355 * 1 2 3 29 29 H 1.09002 * 109.47360 * 59.99869 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46952 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47191 * 300.00235 * 3 2 1 33 33 H 1.08996 * 109.46579 * 60.00194 * 3 2 1 34 34 H 1.08999 * 109.47184 * 299.99968 * 4 2 1 35 35 H 1.09002 * 109.47262 * 59.99699 * 4 2 1 36 36 H 1.09000 * 109.47166 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00359 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.47257 * 60.00131 * 9 8 6 39 39 H 1.09003 * 109.47247 * 300.00104 * 9 8 6 40 40 H 1.08995 * 109.46611 * 59.99536 * 10 9 8 41 41 H 1.08999 * 109.46617 * 300.00211 * 10 9 8 42 42 H 1.09003 * 109.46988 * 59.99868 * 11 10 9 43 43 H 1.09003 * 109.47108 * 300.00343 * 11 10 9 44 44 H 1.08994 * 109.49159 * 67.30254 * 13 12 11 45 45 H 1.08999 * 109.51460 * 307.22708 * 13 12 11 46 46 H 1.08999 * 109.62657 * 186.46027 * 14 13 12 47 47 H 1.09008 * 109.62520 * 65.87988 * 14 13 12 48 48 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.62715 * 68.25082 * 26 15 14 50 50 H 1.09000 * 109.63081 * 188.83321 * 26 15 14 51 51 H 1.09001 * 109.49368 * 292.70476 * 27 12 11 52 52 H 1.09004 * 109.49188 * 52.78672 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0674 -2.6654 2.4170 9 6 1.6743 -4.0669 2.5829 10 6 2.2744 -4.6150 3.8793 11 6 1.8643 -6.0788 4.0522 12 7 2.4410 -6.6051 5.2966 13 6 1.8817 -7.9247 5.6191 14 6 2.3679 -8.3565 7.0067 15 7 3.8365 -8.2803 7.0319 16 6 4.5764 -9.3268 7.4489 17 8 4.0372 -10.3834 7.7205 18 6 6.0285 -9.1925 7.5751 19 1 6.5161 -8.2826 7.2579 20 6 6.7854 -10.2438 8.1071 21 7 6.1952 -11.3445 8.4914 22 14 8.6384 -10.0721 8.2688 23 1 9.2012 -11.3144 8.8565 24 1 9.2334 -9.8448 6.9274 25 1 8.9536 -8.9205 9.1518 26 6 4.4761 -7.0298 6.5956 27 6 3.9072 -6.6523 5.2186 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.6271 -2.2366 3.0832 38 1 2.0415 -4.6498 1.7381 39 1 0.5874 -4.1366 2.6273 40 1 1.9076 -4.0322 4.7241 41 1 3.3612 -4.5453 3.8343 42 1 2.2315 -6.6612 3.2072 43 1 0.7775 -6.1488 4.0969 44 1 2.2113 -8.6508 4.8761 45 1 0.7932 -7.8694 5.6160 46 1 2.0509 -9.3806 7.2034 47 1 1.9537 -7.6902 7.7635 48 1 6.7193 -12.0726 8.8602 49 1 4.2606 -6.2385 7.3137 50 1 5.5535 -7.1764 6.5204 51 1 4.2085 -7.3962 4.4811 52 1 4.2875 -5.6738 4.9252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496903830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:02 Heat of formation + Delta-G solvation = -113.113192 kcal Electronic energy + Delta-G solvation = -29757.068642 eV Core-core repulsion = 25563.775517 eV Total energy + Delta-G solvation = -4193.293126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03578 -39.01216 -37.92546 -36.80728 -35.51304 -34.43345 -33.58084 -32.51153 -31.35808 -30.43993 -27.79283 -27.74089 -27.39445 -26.08783 -24.35833 -23.18351 -22.31173 -21.60109 -20.70054 -20.17176 -18.82796 -18.38879 -17.01808 -16.70392 -16.61710 -15.96292 -15.57563 -15.51224 -15.02410 -14.77226 -14.60811 -14.46828 -14.31604 -14.21782 -13.89083 -13.76370 -13.64573 -12.89456 -12.83343 -12.53189 -12.45032 -12.31278 -12.27298 -12.20454 -11.88737 -11.79089 -11.67450 -11.60425 -11.41686 -11.22545 -11.09416 -10.91555 -10.86246 -10.73038 -10.69903 -10.41006 -10.31572 -10.23166 -9.97439 -9.47501 -8.87130 -8.22750 -7.60435 -7.19942 -6.21490 -4.66751 1.86626 2.57003 3.13599 3.18803 3.20244 3.76676 3.98300 4.08803 4.33369 4.37976 4.52123 4.53100 4.58555 4.70343 4.77785 4.93690 5.08321 5.15741 5.18902 5.27809 5.30749 5.36940 5.37371 5.41450 5.48014 5.48908 5.54659 5.60358 5.67886 5.71839 5.80532 5.83024 5.86370 5.91846 5.93148 5.96593 6.06917 6.11073 6.22978 6.25681 6.44289 6.52722 6.69697 7.11981 7.20210 7.25320 7.43116 7.60092 8.09955 8.11222 8.34589 8.99986 9.42690 10.55771 10.74325 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.001678 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.275671 B =16681.929014 C =17612.621112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.649 3.351 7 O -0.569 6.569 8 N -0.709 5.709 9 C 0.138 3.862 10 C -0.129 4.129 11 C 0.059 3.941 12 N -0.536 5.536 13 C 0.046 3.954 14 C 0.125 3.875 15 N -0.645 5.645 16 C 0.559 3.441 17 O -0.579 6.579 18 C -0.545 4.545 19 H 0.072 0.928 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.268 1.268 25 H -0.267 1.267 26 C 0.129 3.871 27 C 0.038 3.962 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.269 0.731 49 H 0.050 0.950 50 H 0.094 0.906 51 H 0.036 0.964 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 23.498 -15.588 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.459 6.459 8 N -0.369 5.369 9 C 0.015 3.985 10 C -0.167 4.167 11 C -0.069 4.069 12 N -0.261 5.261 13 C -0.083 4.083 14 C 0.001 3.999 15 N -0.384 5.384 16 C 0.365 3.635 17 O -0.462 6.462 18 C -0.582 4.582 19 H 0.090 0.910 20 C -0.132 4.132 21 N -0.397 5.397 22 Si 0.731 3.269 23 H -0.206 1.206 24 H -0.193 1.193 25 H -0.192 1.192 26 C 0.004 3.996 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.112 0.888 51 H 0.054 0.946 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.816 22.791 -15.429 28.900 hybrid contribution 1.345 -0.122 -0.421 1.415 sum -7.471 22.669 -15.849 28.651 Atomic orbital electron populations 1.22518 0.93967 1.05097 1.02497 1.22072 0.94386 0.91522 0.82085 1.21866 1.02308 0.92498 1.03146 1.22521 1.01602 1.03533 0.96452 1.86302 1.71580 1.23676 1.46510 1.18092 0.78917 0.80506 0.82289 1.90904 1.41175 1.70475 1.43298 1.44758 1.55625 1.12851 1.23639 1.21336 1.00292 0.78444 0.98390 1.21813 1.01684 0.96805 0.96415 1.21924 0.99939 0.93704 0.91377 1.61941 1.06301 1.25592 1.32274 1.22513 0.98746 0.88493 0.98535 1.21207 0.83472 1.01477 0.93790 1.48242 1.04080 1.14837 1.71200 1.18249 0.87656 0.81202 0.76353 1.90588 1.73482 1.27341 1.54749 1.20931 0.90401 1.02189 1.44643 0.91014 1.25726 0.99895 0.94378 0.93216 1.70003 1.36534 1.03559 1.29556 0.86454 0.82999 0.78263 0.79176 1.20551 1.19278 1.19220 1.21570 0.98454 0.87175 0.92432 1.22730 0.87145 1.00275 0.98965 0.92151 0.91136 0.89368 0.91426 0.90126 0.91434 0.89361 0.91133 0.92139 0.75798 0.91184 0.91012 0.90039 0.90784 0.94745 0.90622 0.94728 0.90822 0.89572 0.93271 0.92024 0.93203 0.88830 0.94611 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 2 C 0.14 1.08 1.13 -90.62 -0.10 0.98 16 3 C -0.14 -0.77 8.85 37.16 0.33 -0.44 16 4 C -0.18 -1.45 8.37 37.16 0.31 -1.14 16 5 O -0.37 -3.56 9.94 -40.33 -0.40 -3.96 16 6 C 0.65 6.96 8.06 54.05 0.44 7.39 16 7 O -0.57 -7.36 11.88 -19.28 -0.23 -7.59 16 8 N -0.71 -6.06 5.56 -65.27 -0.36 -6.42 16 9 C 0.14 1.16 5.67 -4.04 -0.02 1.14 16 10 C -0.13 -1.08 5.26 -26.73 -0.14 -1.22 16 11 C 0.06 0.63 4.96 -3.83 -0.02 0.61 16 12 N -0.54 -7.44 4.63 -234.02 -1.08 -8.53 16 13 C 0.05 0.72 5.62 -3.70 -0.02 0.70 16 14 C 0.13 2.45 6.61 -3.60 -0.02 2.42 16 15 N -0.64 -14.61 3.00 -173.84 -0.52 -15.13 16 16 C 0.56 15.85 7.63 -12.99 -0.10 15.75 16 17 O -0.58 -18.68 14.49 5.20 0.08 -18.61 16 18 C -0.55 -15.09 8.86 -35.63 -0.32 -15.41 16 19 H 0.07 1.79 5.74 -52.49 -0.30 1.49 16 20 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 21 N -0.77 -22.85 11.84 55.55 0.66 -22.20 16 22 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 26 C 0.13 2.35 6.50 -3.36 -0.02 2.32 16 27 C 0.04 0.56 5.48 -3.46 -0.02 0.54 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.89 5.88 -51.93 -0.31 0.59 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.41 2.69 8.58 -40.82 -0.35 2.34 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 42 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 46 H 0.09 1.87 7.04 -51.93 -0.37 1.51 16 47 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 49 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 50 H 0.09 1.77 5.46 -51.93 -0.28 1.49 16 51 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.90 6.16 -51.93 -0.32 0.58 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -35.30 406.60 -9.12 -44.42 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.87 Total: 2.23 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 0.51 Total: 14.86 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.31 Total: -52.28 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.55 Total: -30.15 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.30 -9.12 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496903830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.692 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds