Wall clock time and date at job start Wed Apr 1 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46960 * 2 1 4 4 C 1.53003 * 109.46998 * 240.00372 * 2 1 3 5 5 O 1.45192 * 109.47605 * 120.00232 * 2 1 3 6 6 C 1.34642 * 117.00159 * 59.99832 * 5 2 1 7 7 O 1.21507 * 119.99757 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00012 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99707 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47159 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47270 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47226 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99826 * 169.99824 * 12 11 10 14 14 C 1.53243 * 109.33672 * 187.25448 * 13 12 11 15 15 N 1.47076 * 108.52280 * 306.17389 * 14 13 12 16 16 C 1.34777 * 120.88062 * 231.18540 * 15 14 13 17 17 O 1.21687 * 120.00006 * 5.22924 * 16 15 14 18 18 C 1.46376 * 120.00313 * 185.22734 * 16 15 14 19 19 H 1.07997 * 119.99552 * 354.99977 * 18 16 15 20 20 C 1.40044 * 120.00321 * 175.00114 * 18 16 15 21 21 N 1.30673 * 119.99689 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00192 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47087 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47042 * 299.99758 * 22 20 18 25 25 H 1.48503 * 109.47023 * 59.99987 * 22 20 18 26 26 C 1.47077 * 118.23996 * 51.45605 * 15 14 13 27 27 C 1.46898 * 111.00153 * 294.30122 * 12 11 10 28 28 H 1.08996 * 109.47316 * 299.99355 * 1 2 3 29 29 H 1.09002 * 109.47360 * 59.99869 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46952 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47191 * 300.00235 * 3 2 1 33 33 H 1.08996 * 109.46579 * 60.00194 * 3 2 1 34 34 H 1.08999 * 109.47184 * 299.99968 * 4 2 1 35 35 H 1.09002 * 109.47262 * 59.99699 * 4 2 1 36 36 H 1.09000 * 109.47166 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00359 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.47257 * 60.00131 * 9 8 6 39 39 H 1.09003 * 109.47247 * 300.00104 * 9 8 6 40 40 H 1.08995 * 109.46611 * 59.99536 * 10 9 8 41 41 H 1.08999 * 109.46617 * 300.00211 * 10 9 8 42 42 H 1.09003 * 109.46988 * 59.99868 * 11 10 9 43 43 H 1.09003 * 109.47108 * 300.00343 * 11 10 9 44 44 H 1.08994 * 109.49159 * 67.30254 * 13 12 11 45 45 H 1.08999 * 109.51460 * 307.22708 * 13 12 11 46 46 H 1.08999 * 109.62657 * 186.46027 * 14 13 12 47 47 H 1.09008 * 109.62520 * 65.87988 * 14 13 12 48 48 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.62715 * 68.25082 * 26 15 14 50 50 H 1.09000 * 109.63081 * 188.83321 * 26 15 14 51 51 H 1.09001 * 109.49368 * 292.70476 * 27 12 11 52 52 H 1.09004 * 109.49188 * 52.78672 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0674 -2.6654 2.4170 9 6 1.6743 -4.0669 2.5829 10 6 2.2744 -4.6150 3.8793 11 6 1.8643 -6.0788 4.0522 12 7 2.4410 -6.6051 5.2966 13 6 1.8817 -7.9247 5.6191 14 6 2.3679 -8.3565 7.0067 15 7 3.8365 -8.2803 7.0319 16 6 4.5764 -9.3268 7.4489 17 8 4.0372 -10.3834 7.7205 18 6 6.0285 -9.1925 7.5751 19 1 6.5161 -8.2826 7.2579 20 6 6.7854 -10.2438 8.1071 21 7 6.1952 -11.3445 8.4914 22 14 8.6384 -10.0721 8.2688 23 1 9.2012 -11.3144 8.8565 24 1 9.2334 -9.8448 6.9274 25 1 8.9536 -8.9205 9.1518 26 6 4.4761 -7.0298 6.5956 27 6 3.9072 -6.6523 5.2186 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.6271 -2.2366 3.0832 38 1 2.0415 -4.6498 1.7381 39 1 0.5874 -4.1366 2.6273 40 1 1.9076 -4.0322 4.7241 41 1 3.3612 -4.5453 3.8343 42 1 2.2315 -6.6612 3.2072 43 1 0.7775 -6.1488 4.0969 44 1 2.2113 -8.6508 4.8761 45 1 0.7932 -7.8694 5.6160 46 1 2.0509 -9.3806 7.2034 47 1 1.9537 -7.6902 7.7635 48 1 6.7193 -12.0726 8.8602 49 1 4.2606 -6.2385 7.3137 50 1 5.5535 -7.1764 6.5204 51 1 4.2085 -7.3962 4.4811 52 1 4.2875 -5.6738 4.9252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496903830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:02 Heat of formation + Delta-G solvation = -139.836043 kcal Electronic energy + Delta-G solvation = -29758.227432 eV Core-core repulsion = 25563.775517 eV Total energy + Delta-G solvation = -4194.451915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77210 -40.46672 -38.84300 -38.30241 -36.52188 -35.35842 -34.82735 -34.57893 -32.52922 -31.74310 -29.01294 -28.34323 -28.27295 -27.70825 -25.48887 -24.58130 -23.17916 -22.63582 -22.03312 -20.90742 -20.53022 -19.11978 -18.50495 -17.86458 -17.60571 -17.38450 -16.69663 -16.42843 -16.17779 -15.93146 -15.82023 -15.78249 -15.51237 -15.33825 -15.12885 -15.01338 -14.40278 -14.37418 -13.84254 -13.58615 -13.32756 -13.29323 -13.13826 -12.99551 -12.90088 -12.84049 -12.72988 -12.70354 -12.65696 -12.49786 -12.45095 -12.28978 -12.19291 -12.02204 -11.99064 -11.79784 -11.46074 -11.36657 -11.10656 -10.91329 -10.19968 -9.78984 -9.45935 -8.99135 -8.28558 -6.83576 1.18745 1.40247 1.43716 1.55186 1.77682 2.24008 2.46257 2.71863 2.98531 3.23302 3.60477 3.77395 3.82214 3.90534 3.96873 3.97518 4.11231 4.14096 4.16906 4.39081 4.40785 4.51308 4.54473 4.58923 4.62832 4.63518 4.71098 4.73960 4.78890 4.82427 4.83699 4.87954 4.90231 4.93139 4.98283 5.08181 5.16674 5.21092 5.24694 5.29986 5.31620 5.38508 5.40140 5.60925 5.75098 6.02401 6.11423 6.15440 6.42547 6.43088 6.88145 7.36112 7.43768 8.47039 8.67708 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.001678 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.275671 B =16681.929014 C =17612.621112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.643 3.357 7 O -0.596 6.596 8 N -0.700 5.700 9 C 0.145 3.855 10 C -0.114 4.114 11 C 0.059 3.941 12 N -0.534 5.534 13 C 0.058 3.942 14 C 0.121 3.879 15 N -0.649 5.649 16 C 0.539 3.461 17 O -0.635 6.635 18 C -0.569 4.569 19 H 0.095 0.905 20 C 0.028 3.972 21 N -0.824 5.824 22 Si 0.996 3.004 23 H -0.277 1.277 24 H -0.253 1.253 25 H -0.252 1.252 26 C 0.123 3.877 27 C 0.047 3.953 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.089 0.911 44 H 0.015 0.985 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.273 0.727 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.018 0.982 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 26.895 -16.601 32.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.022 3.978 10 C -0.152 4.152 11 C -0.069 4.069 12 N -0.259 5.259 13 C -0.071 4.071 14 C -0.002 4.002 15 N -0.386 5.386 16 C 0.346 3.654 17 O -0.523 6.523 18 C -0.605 4.605 19 H 0.113 0.887 20 C -0.187 4.187 21 N -0.453 5.453 22 Si 0.815 3.185 23 H -0.202 1.202 24 H -0.177 1.177 25 H -0.175 1.175 26 C 0.000 4.000 27 C -0.082 4.082 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.033 0.967 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.036 0.964 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.797 26.276 -16.460 31.971 hybrid contribution 0.916 -1.112 -0.137 1.447 sum -6.882 25.164 -16.597 30.920 Atomic orbital electron populations 1.22471 0.93984 1.03635 1.03587 1.22399 0.94581 0.92709 0.81497 1.21886 1.02432 0.90679 1.04320 1.22476 1.01611 1.02197 0.97456 1.86313 1.71576 1.23142 1.47362 1.18307 0.78787 0.80848 0.82429 1.90899 1.42405 1.71069 1.44351 1.44706 1.55271 1.12766 1.23282 1.21230 1.00140 0.78305 0.98155 1.21650 1.01930 0.95151 0.96451 1.22011 1.00612 0.94775 0.89513 1.61932 1.05664 1.23978 1.34306 1.22332 1.00422 0.89117 0.95207 1.21320 0.81891 1.00115 0.96912 1.48142 1.05316 1.15083 1.70059 1.18695 0.88751 0.81694 0.76308 1.90533 1.74609 1.29883 1.57238 1.21479 0.90722 1.03471 1.44869 0.88696 1.27013 1.06273 0.93452 0.91976 1.70193 1.39335 1.04926 1.30888 0.85101 0.74767 0.78697 0.79942 1.20174 1.17737 1.17544 1.21787 0.98002 0.85407 0.94838 1.22636 0.87840 1.01670 0.96023 0.91888 0.89222 0.92003 0.91232 0.88083 0.91136 0.92031 0.89206 0.92010 0.74523 0.91945 0.91237 0.89229 0.90199 0.94951 0.89280 0.96681 0.87740 0.92881 0.91944 0.91676 0.91665 0.89743 0.96365 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.37 71.98 0.60 -1.99 16 2 C 0.12 1.80 1.13 -10.79 -0.01 1.79 16 3 C -0.14 -1.16 8.85 71.98 0.64 -0.52 16 4 C -0.18 -2.66 8.37 71.98 0.60 -2.06 16 5 O -0.37 -6.73 9.94 -55.52 -0.55 -7.28 16 6 C 0.64 13.19 8.06 129.79 1.05 14.24 16 7 O -0.60 -15.35 11.88 19.82 0.24 -15.12 16 8 N -0.70 -10.66 5.56 -590.83 -3.29 -13.94 16 9 C 0.14 2.13 5.67 86.38 0.49 2.62 16 10 C -0.11 -1.53 5.26 30.59 0.16 -1.37 16 11 C 0.06 1.08 4.96 86.30 0.43 1.51 16 12 N -0.53 -13.54 4.63 -894.31 -4.14 -17.68 16 13 C 0.06 1.77 5.62 86.38 0.49 2.25 16 14 C 0.12 4.84 6.61 86.35 0.57 5.41 16 15 N -0.65 -29.95 3.00 -822.12 -2.47 -32.42 16 16 C 0.54 31.77 7.63 86.36 0.66 32.43 16 17 O -0.63 -43.37 14.49 -4.31 -0.06 -43.43 16 18 C -0.57 -32.04 8.86 24.83 0.22 -31.82 16 19 H 0.10 4.71 5.74 -2.91 -0.02 4.69 16 20 C 0.03 1.55 5.50 85.30 0.47 2.01 16 21 N -0.82 -50.83 11.84 21.83 0.26 -50.57 16 22 Si 1.00 40.57 29.56 68.60 2.03 42.60 16 23 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 26 C 0.12 4.35 6.50 86.50 0.56 4.91 16 27 C 0.05 1.29 5.48 86.54 0.47 1.76 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.25 5.88 -2.38 -0.01 1.24 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.27 5.88 -2.39 -0.01 1.25 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.42 4.47 8.58 -92.71 -0.80 3.68 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.02 6.40 -2.39 -0.02 1.00 16 42 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 43 H 0.09 1.44 7.97 -2.39 -0.02 1.42 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 45 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 46 H 0.05 2.45 7.04 -2.39 -0.02 2.43 16 47 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 49 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 50 H 0.08 3.12 5.46 -2.39 -0.01 3.10 16 51 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.11 2.29 6.16 -2.38 -0.01 2.27 16 Total: -1.00 -81.84 406.60 -0.47 -82.31 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.12 Total: 24.35 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 7.40 Total: 31.19 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -9.63 Total: -114.61 kcal Atomic # 8 Polarization: -65.45 SS G_CDS: -0.38 Total: -65.83 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -81.84 -0.47 -82.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496903830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.530 kcal (2) G-P(sol) polarization free energy of solvation -81.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds