Wall clock time and date at job start Wed Apr 1 2020 00:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47814 * 2 1 4 4 C 1.53003 * 109.46634 * 239.99467 * 2 1 3 5 5 O 1.45202 * 109.46848 * 120.00329 * 2 1 3 6 6 C 1.34230 * 117.00199 * 59.99599 * 5 2 1 7 7 O 1.20819 * 119.99791 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99969 * 180.02562 * 6 5 2 9 9 C 1.52996 * 109.47229 * 179.97438 * 8 6 5 10 10 N 1.46505 * 109.47308 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00225 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00300 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.44009 * 84.79625 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 205.00269 * 14 13 11 28 28 H 1.09002 * 109.46663 * 300.00643 * 1 2 3 29 29 H 1.09008 * 109.47234 * 59.99594 * 1 2 3 30 30 H 1.08998 * 109.47672 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47332 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46963 * 299.99968 * 3 2 1 33 33 H 1.08998 * 109.47195 * 59.99526 * 3 2 1 34 34 H 1.08998 * 109.47345 * 300.00511 * 4 2 1 35 35 H 1.08999 * 109.47121 * 60.00523 * 4 2 1 36 36 H 1.09004 * 109.46884 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.47413 * 59.99498 * 8 6 5 38 38 H 1.09006 * 109.47342 * 299.99912 * 8 6 5 39 39 H 1.09000 * 109.46942 * 60.00417 * 9 8 6 40 40 H 1.08997 * 109.47369 * 299.99810 * 9 8 6 41 41 H 0.97005 * 119.99867 * 0.02562 * 10 9 8 42 42 H 0.97005 * 119.99791 * 0.02562 * 13 11 10 43 43 H 1.08998 * 109.45866 * 324.97703 * 14 13 11 44 44 H 1.09002 * 109.39343 * 61.36176 * 15 14 13 45 45 H 1.09003 * 109.62467 * 301.25403 * 15 14 13 46 46 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 47 47 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 48 48 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 50 50 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 51 51 H 1.09002 * 109.49555 * 58.67538 * 27 14 13 52 52 H 1.08992 * 109.52043 * 298.59539 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6532 -1.9685 1.3379 7 8 0.9558 -2.5025 0.5083 8 6 2.1171 -2.7435 2.5441 9 6 1.5696 -4.1705 2.4751 10 7 2.0211 -4.9241 3.6475 11 6 1.6582 -6.2129 3.8009 12 8 0.9564 -6.7503 2.9660 13 7 2.0731 -6.9061 4.8797 14 6 1.6790 -8.3072 5.0462 15 6 2.6489 -9.2045 4.2732 16 6 2.2157 -10.6662 4.4242 17 7 2.1046 -10.9842 5.8543 18 6 2.7692 -12.0579 6.3840 19 1 3.0705 -12.0485 7.4211 20 6 3.0556 -13.1585 5.5881 21 7 2.4205 -13.3292 4.4479 22 14 4.3423 -14.3972 6.1350 23 1 3.9375 -14.9903 7.4349 24 1 4.4604 -15.4709 5.1159 25 1 5.6524 -13.7151 6.2887 26 6 1.2664 -10.1284 6.7052 27 6 1.7120 -8.6730 6.5319 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6766 -0.2076 -2.1392 36 1 3.1299 -0.7218 -1.2490 37 1 1.7530 -2.2584 3.4498 38 1 3.2067 -2.7724 2.5605 39 1 1.9335 -4.6558 1.5695 40 1 0.4801 -4.1412 2.4590 41 1 2.5807 -4.4952 4.3137 42 1 2.6327 -6.4772 5.5459 43 1 0.6698 -8.4490 4.6595 44 1 3.6548 -9.0799 4.6740 45 1 2.6404 -8.9296 3.2185 46 1 2.9580 -11.3168 3.9618 47 1 1.2497 -10.8128 3.9411 48 1 2.6203 -14.0984 3.8919 49 1 0.2223 -10.2288 6.4086 50 1 1.3804 -10.4260 7.7476 51 1 1.0372 -8.0179 7.0829 52 1 2.7260 -8.5550 6.9136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610350920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:53 Heat of formation + Delta-G solvation = -104.650667 kcal Electronic energy + Delta-G solvation = -29786.722908 eV Core-core repulsion = 25593.796745 eV Total energy + Delta-G solvation = -4192.926163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27343 -39.92129 -37.78264 -37.35816 -35.28875 -34.50664 -34.29044 -32.25182 -31.12088 -29.91683 -29.21674 -27.86680 -27.83266 -25.45782 -24.47029 -22.24558 -22.12996 -21.68917 -20.68160 -19.97805 -19.40337 -18.14719 -17.57254 -16.86308 -16.80922 -16.73941 -16.02638 -15.53201 -14.90635 -14.80465 -14.57531 -14.35682 -14.08791 -14.04359 -13.94588 -13.67276 -13.45378 -12.96416 -12.93749 -12.71447 -12.55531 -12.42674 -12.36703 -12.31074 -12.25794 -12.01525 -11.72665 -11.63904 -11.44581 -11.07976 -10.89606 -10.82240 -10.69342 -10.39476 -10.34711 -10.22509 -10.06990 -9.94830 -9.71671 -9.52578 -9.17984 -8.58584 -8.35523 -6.64625 -5.75001 -3.18296 1.82718 2.08038 2.91508 3.40486 3.41253 3.46499 3.47289 4.10156 4.24674 4.28684 4.35826 4.43864 4.48438 4.52174 4.57704 4.92273 5.02264 5.08851 5.23800 5.26557 5.33988 5.38667 5.39655 5.43597 5.49901 5.54368 5.54559 5.69220 5.70607 5.81494 5.84420 5.88143 6.12324 6.13384 6.27997 6.37229 6.40713 6.49763 6.63161 6.69503 6.80461 6.93843 6.98897 7.12911 7.42319 7.43553 7.73303 7.82542 8.16151 8.48735 8.79128 9.24476 9.87857 10.44863 11.33460 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.001609 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.120086 B =17398.640045 C =17708.500720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.352 6.352 6 C 0.469 3.531 7 O -0.495 6.495 8 C -0.128 4.128 9 C 0.152 3.848 10 N -0.754 5.754 11 C 0.702 3.298 12 O -0.584 6.584 13 N -0.739 5.739 14 C 0.168 3.832 15 C -0.147 4.147 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.394 0.606 42 H 0.390 0.610 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.021 0.979 48 H 0.255 0.745 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.055 0.945 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 31.202 -4.762 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.270 6.270 6 C 0.311 3.689 7 O -0.382 6.382 8 C -0.166 4.166 9 C 0.027 3.973 10 N -0.412 5.412 11 C 0.402 3.598 12 O -0.461 6.461 13 N -0.392 5.392 14 C 0.065 3.935 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.227 0.773 42 H 0.223 0.777 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.164 30.382 -5.956 30.960 hybrid contribution 1.214 -0.102 0.710 1.410 sum 1.049 30.279 -5.245 30.748 Atomic orbital electron populations 1.22503 0.93867 1.04933 1.02822 1.22216 0.94508 0.92253 0.82922 1.21856 1.02256 0.92539 1.03129 1.22504 1.01737 1.03305 0.96608 1.86532 1.69889 1.25232 1.45331 1.23227 0.77610 0.80737 0.87295 1.90645 1.34709 1.69767 1.43048 1.21527 1.04164 0.95125 0.95785 1.20808 1.00181 0.87675 0.88643 1.45021 1.57848 1.11562 1.26754 1.15941 0.80537 0.80593 0.82733 1.90959 1.42207 1.69211 1.43734 1.45515 1.55964 1.13746 1.24025 1.20921 0.99407 0.77111 0.96109 1.22583 0.98452 0.98930 0.98752 1.20758 0.99803 0.89757 0.84992 1.44090 1.52929 1.29899 1.04568 1.19126 1.29475 0.93442 0.96468 0.91720 1.25063 0.99714 0.96837 0.97962 1.70027 1.41003 1.29565 1.13899 0.86373 0.81934 0.80767 0.77678 1.20889 1.21655 1.21094 1.20841 0.93486 0.88050 0.95520 1.22332 1.01461 0.99800 0.94179 0.91966 0.90949 0.89645 0.91428 0.90279 0.91444 0.89639 0.90947 0.91931 0.87044 0.86997 0.90582 0.90632 0.77293 0.77736 0.90079 0.92851 0.92776 0.89349 0.96106 0.93526 0.96182 0.92361 0.92673 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.37 37.16 0.31 -0.99 16 2 C 0.12 0.82 1.13 -90.62 -0.10 0.72 16 3 C -0.14 -0.67 8.85 37.15 0.33 -0.34 16 4 C -0.18 -1.33 8.37 37.16 0.31 -1.02 16 5 O -0.35 -2.85 9.89 -39.26 -0.39 -3.24 16 6 C 0.47 4.09 7.27 36.00 0.26 4.36 16 7 O -0.49 -5.67 11.48 -18.74 -0.22 -5.89 16 8 C -0.13 -0.79 5.92 -27.89 -0.17 -0.96 16 9 C 0.15 1.52 4.96 -4.04 -0.02 1.50 16 10 N -0.75 -7.68 5.56 -65.23 -0.36 -8.04 16 11 C 0.70 10.68 8.53 -86.92 -0.74 9.94 16 12 O -0.58 -11.86 16.01 5.29 0.08 -11.78 16 13 N -0.74 -10.35 5.08 -58.62 -0.30 -10.64 16 14 C 0.17 2.98 2.41 -67.87 -0.16 2.81 16 15 C -0.15 -2.99 5.66 -26.59 -0.15 -3.14 16 16 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 17 N -0.59 -14.89 3.00 -172.31 -0.52 -15.41 16 18 C -0.26 -7.01 9.58 -15.06 -0.14 -7.16 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 22 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 27 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.79 5.89 -51.93 -0.31 0.49 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.81 5.89 -51.93 -0.31 0.50 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.39 2.53 8.49 -40.82 -0.35 2.18 16 42 H 0.39 4.11 8.62 -40.82 -0.35 3.75 16 43 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.16 7.93 -51.92 -0.41 0.74 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 411.44 15.07 6.20 6.20 Total: -1.00 -34.80 411.44 -9.62 -44.42 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -9.16 Total: 2.99 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.55 Total: 10.61 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.56 Total: -60.05 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.52 Total: -20.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.80 -9.62 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.231 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds