Wall clock time and date at job start Wed Apr 1 2020 00:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47814 * 2 1 4 4 C 1.53003 * 109.46634 * 239.99467 * 2 1 3 5 5 O 1.45202 * 109.46848 * 120.00329 * 2 1 3 6 6 C 1.34230 * 117.00199 * 59.99599 * 5 2 1 7 7 O 1.20819 * 119.99791 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99969 * 180.02562 * 6 5 2 9 9 C 1.52996 * 109.47229 * 179.97438 * 8 6 5 10 10 N 1.46505 * 109.47308 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00225 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00300 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.44009 * 84.79625 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 205.00269 * 14 13 11 28 28 H 1.09002 * 109.46663 * 300.00643 * 1 2 3 29 29 H 1.09008 * 109.47234 * 59.99594 * 1 2 3 30 30 H 1.08998 * 109.47672 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47332 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46963 * 299.99968 * 3 2 1 33 33 H 1.08998 * 109.47195 * 59.99526 * 3 2 1 34 34 H 1.08998 * 109.47345 * 300.00511 * 4 2 1 35 35 H 1.08999 * 109.47121 * 60.00523 * 4 2 1 36 36 H 1.09004 * 109.46884 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.47413 * 59.99498 * 8 6 5 38 38 H 1.09006 * 109.47342 * 299.99912 * 8 6 5 39 39 H 1.09000 * 109.46942 * 60.00417 * 9 8 6 40 40 H 1.08997 * 109.47369 * 299.99810 * 9 8 6 41 41 H 0.97005 * 119.99867 * 0.02562 * 10 9 8 42 42 H 0.97005 * 119.99791 * 0.02562 * 13 11 10 43 43 H 1.08998 * 109.45866 * 324.97703 * 14 13 11 44 44 H 1.09002 * 109.39343 * 61.36176 * 15 14 13 45 45 H 1.09003 * 109.62467 * 301.25403 * 15 14 13 46 46 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 47 47 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 48 48 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 50 50 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 51 51 H 1.09002 * 109.49555 * 58.67538 * 27 14 13 52 52 H 1.08992 * 109.52043 * 298.59539 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6532 -1.9685 1.3379 7 8 0.9558 -2.5025 0.5083 8 6 2.1171 -2.7435 2.5441 9 6 1.5696 -4.1705 2.4751 10 7 2.0211 -4.9241 3.6475 11 6 1.6582 -6.2129 3.8009 12 8 0.9564 -6.7503 2.9660 13 7 2.0731 -6.9061 4.8797 14 6 1.6790 -8.3072 5.0462 15 6 2.6489 -9.2045 4.2732 16 6 2.2157 -10.6662 4.4242 17 7 2.1046 -10.9842 5.8543 18 6 2.7692 -12.0579 6.3840 19 1 3.0705 -12.0485 7.4211 20 6 3.0556 -13.1585 5.5881 21 7 2.4205 -13.3292 4.4479 22 14 4.3423 -14.3972 6.1350 23 1 3.9375 -14.9903 7.4349 24 1 4.4604 -15.4709 5.1159 25 1 5.6524 -13.7151 6.2887 26 6 1.2664 -10.1284 6.7052 27 6 1.7120 -8.6730 6.5319 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6766 -0.2076 -2.1392 36 1 3.1299 -0.7218 -1.2490 37 1 1.7530 -2.2584 3.4498 38 1 3.2067 -2.7724 2.5605 39 1 1.9335 -4.6558 1.5695 40 1 0.4801 -4.1412 2.4590 41 1 2.5807 -4.4952 4.3137 42 1 2.6327 -6.4772 5.5459 43 1 0.6698 -8.4490 4.6595 44 1 3.6548 -9.0799 4.6740 45 1 2.6404 -8.9296 3.2185 46 1 2.9580 -11.3168 3.9618 47 1 1.2497 -10.8128 3.9411 48 1 2.6203 -14.0984 3.8919 49 1 0.2223 -10.2288 6.4086 50 1 1.3804 -10.4260 7.7476 51 1 1.0372 -8.0179 7.0829 52 1 2.7260 -8.5550 6.9136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610350920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:52 Heat of formation + Delta-G solvation = -128.654238 kcal Electronic energy + Delta-G solvation = -29787.763781 eV Core-core repulsion = 25593.796745 eV Total energy + Delta-G solvation = -4193.967036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93106 -41.16394 -39.15222 -38.26672 -36.38920 -35.85710 -35.08327 -33.94247 -32.28538 -31.59655 -30.77359 -28.39259 -28.29540 -27.03276 -25.68160 -23.89479 -23.65065 -22.49286 -21.91173 -21.07358 -20.60610 -19.38544 -18.64705 -18.27680 -17.53562 -17.41123 -17.29900 -16.73592 -16.50288 -15.84141 -15.58182 -15.44314 -15.33873 -15.23641 -14.95633 -14.88780 -14.69848 -14.56085 -14.24868 -13.98524 -13.36813 -13.17970 -13.17148 -13.03110 -12.97843 -12.90749 -12.87223 -12.72173 -12.61011 -12.54534 -12.35119 -12.18051 -12.10648 -12.06005 -11.84368 -11.52102 -11.45269 -11.40631 -11.22371 -11.01524 -10.56341 -10.33739 -9.74292 -8.69666 -7.85665 -5.32382 1.18177 1.35587 1.48613 1.51492 1.58210 1.96606 2.18098 2.53150 3.26884 3.33738 3.52697 3.69241 3.72497 3.78051 3.85371 3.91100 3.95764 4.02027 4.12525 4.37344 4.42543 4.50280 4.58465 4.58849 4.69512 4.75303 4.78089 4.81327 4.82035 4.83251 4.88174 4.91481 4.93159 5.08171 5.11506 5.13245 5.15995 5.24769 5.29263 5.34520 5.40634 5.48364 5.55580 5.62367 5.65715 5.71314 6.06860 6.40051 6.78250 7.14605 7.17747 7.63740 7.86040 8.39133 9.21284 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.001609 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.120086 B =17398.640045 C =17708.500720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.351 6.351 6 C 0.466 3.534 7 O -0.530 6.530 8 C -0.113 4.113 9 C 0.155 3.845 10 N -0.727 5.727 11 C 0.698 3.302 12 O -0.640 6.640 13 N -0.722 5.722 14 C 0.180 3.820 15 C -0.130 4.130 16 C 0.182 3.818 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.940 5.940 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.140 3.860 27 C -0.119 4.119 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.418 0.582 42 H 0.413 0.587 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.054 0.946 47 H -0.014 1.014 48 H 0.249 0.751 49 H 0.010 0.990 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 34.366 -2.437 34.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.193 4.193 4 C -0.240 4.240 5 O -0.268 6.268 6 C 0.310 3.690 7 O -0.419 6.419 8 C -0.150 4.150 9 C 0.030 3.970 10 N -0.385 5.385 11 C 0.397 3.603 12 O -0.522 6.522 13 N -0.377 5.377 14 C 0.074 3.926 15 C -0.171 4.171 16 C 0.055 3.945 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.586 5.586 22 Si 0.798 3.202 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.014 3.986 27 C -0.158 4.158 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.256 0.744 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.058 0.942 49 H 0.028 0.972 50 H 0.088 0.912 51 H 0.111 0.889 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.621 33.648 -3.552 33.874 hybrid contribution 0.601 -1.033 -0.047 1.196 sum 2.223 32.615 -3.598 32.888 Atomic orbital electron populations 1.22472 0.94141 1.03440 1.03842 1.22460 0.94476 0.93459 0.82429 1.21867 1.02485 0.90751 1.04192 1.22477 1.01926 1.01942 0.97618 1.86531 1.69710 1.24830 1.45771 1.23712 0.76881 0.80953 0.87484 1.90657 1.36354 1.70446 1.44476 1.21468 1.05642 0.92060 0.95836 1.20696 0.99073 0.89829 0.87440 1.44681 1.56998 1.09740 1.27127 1.16167 0.80100 0.81826 0.82190 1.90938 1.44718 1.70784 1.45716 1.45038 1.56086 1.12148 1.24397 1.20508 0.96973 0.78601 0.96481 1.22324 0.99515 0.96510 0.98712 1.20460 0.97006 0.92004 0.84989 1.44333 1.53810 1.30252 1.04796 1.19556 1.29003 0.93813 0.96877 0.90711 1.25895 1.01821 0.99063 0.98225 1.70212 1.42844 1.30173 1.15346 0.85297 0.79526 0.78154 0.77201 1.19769 1.22519 1.20188 1.21066 0.92391 0.89937 0.95205 1.22118 1.03166 0.97215 0.93321 0.91399 0.89498 0.92316 0.91045 0.88689 0.90942 0.92350 0.89479 0.91523 0.83829 0.84100 0.93199 0.92794 0.74401 0.74969 0.92954 0.91884 0.93999 0.92767 0.99548 0.94231 0.97219 0.91222 0.88921 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.37 71.98 0.60 -1.87 16 2 C 0.11 1.39 1.13 -10.79 -0.01 1.38 16 3 C -0.14 -0.98 8.85 71.98 0.64 -0.34 16 4 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 5 O -0.35 -5.15 9.89 -51.42 -0.51 -5.65 16 6 C 0.47 7.74 7.27 71.23 0.52 8.26 16 7 O -0.53 -12.66 11.48 21.99 0.25 -12.41 16 8 C -0.11 -1.11 5.92 29.85 0.18 -0.93 16 9 C 0.15 2.98 4.96 86.38 0.43 3.41 16 10 N -0.73 -13.17 5.56 -478.54 -2.66 -15.83 16 11 C 0.70 20.42 8.53 179.06 1.53 21.95 16 12 O -0.64 -26.64 16.01 -3.99 -0.06 -26.70 16 13 N -0.72 -18.44 5.08 -457.64 -2.33 -20.77 16 14 C 0.18 6.17 2.41 45.03 0.11 6.28 16 15 C -0.13 -5.35 5.66 30.69 0.17 -5.18 16 16 C 0.18 9.40 5.30 86.37 0.46 9.86 16 17 N -0.61 -30.87 3.00 -699.07 -2.09 -32.96 16 18 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 19 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 20 C -0.06 -3.12 4.92 84.86 0.42 -2.70 16 21 N -0.94 -57.58 11.20 21.65 0.24 -57.33 16 22 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.14 5.63 6.52 86.36 0.56 6.19 16 27 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 1.14 5.89 -2.39 -0.01 1.12 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 1.16 5.89 -2.39 -0.01 1.14 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.14 0.57 8.14 -2.38 -0.02 0.56 16 38 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 40 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 41 H 0.42 3.61 8.49 -92.70 -0.79 2.82 16 42 H 0.41 6.90 8.62 -92.70 -0.80 6.10 16 43 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 3.15 6.06 -2.39 -0.01 3.13 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.07 2.63 7.93 -2.38 -0.02 2.61 16 51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -81.49 411.44 1.38 -80.11 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.67 Total: 16.99 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 7.18 Total: 27.35 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.84 Total: -126.89 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.32 Total: -44.76 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -81.49 1.38 -80.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.544 kcal (2) G-P(sol) polarization free energy of solvation -81.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds