Wall clock time and date at job start Wed Apr 1 2020 00:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.52998 * 109.47321 * 240.00073 * 2 1 3 5 5 O 1.45203 * 109.47030 * 119.99855 * 2 1 3 6 6 C 1.34631 * 117.00115 * 60.00660 * 5 2 1 7 7 O 1.21514 * 120.00120 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99964 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99795 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47110 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64259 * 303.30308 * 10 9 8 12 12 C 1.54600 * 110.72435 * 66.45292 * 10 9 8 13 13 C 1.53993 * 105.13842 * 140.49289 * 12 10 9 14 14 N 1.47908 * 107.05701 * 1.22943 * 13 12 10 15 15 C 1.46902 * 110.99702 * 214.15134 * 14 13 12 16 16 C 1.50697 * 109.46962 * 176.63669 * 15 14 13 17 17 O 1.21280 * 120.00016 * 6.13946 * 16 15 14 18 18 N 1.34773 * 120.00143 * 186.13589 * 16 15 14 19 19 C 1.46503 * 120.00381 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47171 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00517 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46923 * 120.00653 * 24 22 20 27 27 H 1.48498 * 109.47200 * 240.00569 * 24 22 20 28 28 C 1.48527 * 105.81843 * 334.66727 * 14 13 12 29 29 H 1.09003 * 109.46995 * 299.99970 * 1 2 3 30 30 H 1.09001 * 109.47159 * 60.00294 * 1 2 3 31 31 H 1.09004 * 109.46759 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47024 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46988 * 299.99810 * 3 2 1 34 34 H 1.09003 * 109.47286 * 60.00208 * 3 2 1 35 35 H 1.09004 * 109.47060 * 299.99639 * 4 2 1 36 36 H 1.09001 * 109.47304 * 59.99721 * 4 2 1 37 37 H 1.08998 * 109.46928 * 180.02562 * 4 2 1 38 38 H 0.96995 * 119.99987 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.46946 * 60.00168 * 9 8 6 40 40 H 1.09001 * 109.47355 * 299.99907 * 9 8 6 41 41 H 1.08999 * 110.30654 * 21.58275 * 12 10 9 42 42 H 1.08997 * 110.30865 * 259.41311 * 12 10 9 43 43 H 1.08990 * 109.91893 * 241.87441 * 13 12 10 44 44 H 1.09007 * 110.07769 * 120.66857 * 13 12 10 45 45 H 1.09005 * 109.46891 * 56.63808 * 15 14 13 46 46 H 1.08998 * 109.47316 * 296.64042 * 15 14 13 47 47 H 0.97002 * 120.00177 * 0.02562 * 18 16 15 48 48 H 1.09004 * 109.46761 * 300.00145 * 19 18 16 49 49 H 1.08994 * 109.46922 * 59.99728 * 19 18 16 50 50 H 0.96999 * 120.00068 * 179.97438 * 23 22 20 51 51 H 1.09007 * 110.66642 * 157.64827 * 28 14 13 52 52 H 1.09004 * 110.67114 * 280.77056 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9511 -2.5095 0.5040 8 7 2.0682 -2.6656 2.4167 9 6 1.6742 -4.0668 2.5832 10 6 2.2743 -4.6148 3.8795 11 1 3.3585 -4.5016 3.8790 12 6 1.6517 -3.9149 5.1094 13 6 1.4696 -5.0290 6.1568 14 7 1.9906 -6.2769 5.5578 15 6 1.2149 -7.4405 6.0075 16 6 1.7205 -8.6796 5.3147 17 8 2.7062 -8.6211 4.6105 18 7 1.0775 -9.8528 5.4777 19 6 1.5694 -11.0575 4.8046 20 6 0.6795 -12.2239 5.1487 21 1 -0.1681 -12.0821 5.8029 22 6 0.9466 -13.4721 4.6274 23 7 1.9784 -13.6448 3.8303 24 14 -0.1561 -14.9182 5.0544 25 1 -1.2391 -14.4635 5.9630 26 1 -0.7524 -15.4699 3.8114 27 1 0.6464 -15.9707 5.7279 28 6 1.8782 -6.0981 4.0876 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.6277 -2.2367 3.0829 39 1 2.0400 -4.6499 1.7381 40 1 0.5873 -4.1357 2.6289 41 1 0.6871 -3.4794 4.8487 42 1 2.3250 -3.1459 5.4881 43 1 0.4125 -5.1449 6.3956 44 1 2.0302 -4.7885 7.0602 45 1 0.1628 -7.2919 5.7641 46 1 1.3254 -7.5563 7.0857 47 1 0.2890 -9.8995 6.0407 48 1 1.5609 -10.9001 3.7261 49 1 2.5873 -11.2672 5.1332 50 1 2.1666 -14.5230 3.4639 51 1 2.5710 -6.7583 3.5657 52 1 0.8547 -6.2731 3.7559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725810543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:19 Heat of formation + Delta-G solvation = -121.371794 kcal Electronic energy + Delta-G solvation = -29667.883105 eV Core-core repulsion = 25474.231860 eV Total energy + Delta-G solvation = -4193.651246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02513 -39.74788 -38.34121 -37.45251 -35.26703 -34.32407 -34.13014 -32.42442 -32.07984 -29.61693 -28.04062 -27.76985 -27.70640 -26.44788 -25.03530 -22.53216 -22.47153 -21.25743 -20.55885 -20.10790 -19.65385 -18.39312 -17.28500 -16.88553 -16.59099 -16.20455 -15.84844 -15.45252 -15.34286 -14.98729 -14.93196 -14.73573 -14.53896 -14.08001 -13.95077 -13.75868 -13.40681 -13.23299 -12.86992 -12.75514 -12.49213 -12.36069 -12.25076 -12.24185 -12.08032 -11.93583 -11.88439 -11.78979 -11.64916 -11.32899 -11.23649 -11.06372 -10.94380 -10.84763 -10.77712 -10.67085 -10.31564 -10.29778 -9.43100 -9.38499 -9.00231 -8.74312 -8.37277 -7.86872 -6.17297 -4.24212 1.89521 2.61324 3.23042 3.30112 3.33020 3.36492 3.69393 3.84232 4.16043 4.34188 4.36178 4.40537 4.49416 4.53434 4.55081 4.65222 5.00854 5.10502 5.11153 5.18384 5.18870 5.19650 5.25229 5.33210 5.33501 5.41012 5.47587 5.50825 5.51291 5.53058 5.56954 5.62567 5.63247 5.66216 5.86300 5.87399 5.95880 6.04223 6.13369 6.24060 6.26196 6.85686 6.90749 7.15987 7.31648 7.44287 7.51693 7.66879 7.96599 8.14049 8.62527 8.78322 9.10939 9.42657 10.92897 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.001690 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.818695 B =16565.810768 C =17490.455392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.648 3.352 7 O -0.567 6.567 8 N -0.708 5.708 9 C 0.146 3.854 10 C -0.105 4.105 11 H 0.094 0.906 12 C -0.127 4.127 13 C 0.034 3.966 14 N -0.496 5.496 15 C 0.027 3.973 16 C 0.497 3.503 17 O -0.540 6.540 18 N -0.714 5.714 19 C 0.251 3.749 20 C -0.543 4.543 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.045 3.955 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.390 0.610 48 H 0.026 0.974 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.110 0.890 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 30.452 -1.873 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.401 3.599 7 O -0.456 6.456 8 N -0.367 5.367 9 C 0.023 3.977 10 C -0.125 4.125 11 H 0.112 0.888 12 C -0.165 4.165 13 C -0.094 4.094 14 N -0.220 5.220 15 C -0.105 4.105 16 C 0.281 3.719 17 O -0.418 6.418 18 N -0.363 5.363 19 C 0.130 3.870 20 C -0.582 4.582 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.083 4.083 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.240 0.760 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.222 0.778 48 H 0.044 0.956 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.128 0.872 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.285 30.004 -2.805 30.162 hybrid contribution -1.616 -0.621 0.576 1.824 sum -2.901 29.383 -2.230 29.610 Atomic orbital electron populations 1.22520 0.93983 1.05141 1.02444 1.22067 0.94370 0.91479 0.82122 1.21864 1.02278 0.92535 1.03103 1.22523 1.01601 1.03608 0.96415 1.86292 1.71643 1.23709 1.46510 1.18096 0.79000 0.80491 0.82305 1.90921 1.41049 1.70419 1.43214 1.44734 1.55595 1.12790 1.23586 1.21380 0.99948 0.78449 0.97895 1.22366 1.01522 0.95841 0.92756 0.88786 1.22502 1.01111 0.97825 0.95059 1.22912 0.98542 0.89657 0.98283 1.64572 1.50584 1.00959 1.05876 1.22254 0.95963 0.90852 1.01439 1.20254 0.84473 0.84671 0.82471 1.90631 1.26041 1.85552 1.39547 1.46457 1.30477 1.09619 1.49767 1.19094 0.95400 0.79658 0.92846 1.21268 1.12815 0.93351 1.30743 0.91870 1.24957 0.95423 0.98939 0.94714 1.69987 1.27190 1.23677 1.31375 0.86362 0.80291 0.82001 0.78256 1.19657 1.20811 1.20785 1.23317 1.01096 0.94602 0.89258 0.92224 0.91129 0.89324 0.91449 0.90132 0.91497 0.89291 0.91129 0.92133 0.75955 0.90526 0.91023 0.91215 0.90849 0.93707 0.90144 0.92402 0.88080 0.77817 0.95578 0.95501 0.92496 0.87188 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 2 C 0.14 1.13 1.13 -90.62 -0.10 1.03 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.46 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 5 O -0.37 -3.65 9.94 -40.30 -0.40 -4.05 16 6 C 0.65 7.24 8.06 54.06 0.44 7.67 16 7 O -0.57 -7.76 11.88 -19.28 -0.23 -7.99 16 8 N -0.71 -6.35 5.41 -65.28 -0.35 -6.70 16 9 C 0.15 1.41 5.02 -4.04 -0.02 1.39 16 10 C -0.11 -1.01 3.12 -88.76 -0.28 -1.28 16 11 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.13 -1.02 6.20 -25.37 -0.16 -1.17 16 13 C 0.03 0.33 6.70 -2.75 -0.02 0.31 16 14 N -0.50 -6.63 5.11 -231.89 -1.18 -7.81 16 15 C 0.03 0.37 5.31 -4.98 -0.03 0.34 16 16 C 0.50 9.64 7.46 -10.99 -0.08 9.55 16 17 O -0.54 -12.55 14.30 5.56 0.08 -12.47 16 18 N -0.71 -14.72 5.55 -61.48 -0.34 -15.06 16 19 C 0.25 6.59 5.43 -5.19 -0.03 6.57 16 20 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 24 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.05 0.60 5.04 -1.90 -0.01 0.59 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.41 2.77 8.44 -40.82 -0.34 2.43 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.07 0.53 7.80 -51.93 -0.41 0.12 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.40 7.68 -51.93 -0.40 0.00 16 44 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.06 0.69 7.98 -51.93 -0.41 0.28 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 48 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 51 H 0.11 1.81 6.43 -51.92 -0.33 1.47 16 52 H 0.04 0.57 7.92 -51.93 -0.41 0.16 16 LS Contribution 414.41 15.07 6.25 6.25 Total: -1.00 -33.58 414.41 -9.35 -42.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -9.13 Total: 5.68 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 0.25 Total: 8.76 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -1.14 Total: -54.88 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.55 Total: -24.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.58 -9.35 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725810543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.445 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds