Wall clock time and date at job start Wed Apr 1 2020 00:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.52998 * 109.47321 * 240.00073 * 2 1 3 5 5 O 1.45203 * 109.47030 * 119.99855 * 2 1 3 6 6 C 1.34631 * 117.00115 * 60.00660 * 5 2 1 7 7 O 1.21514 * 120.00120 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99964 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99795 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47110 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64259 * 303.30308 * 10 9 8 12 12 C 1.54600 * 110.72435 * 66.45292 * 10 9 8 13 13 C 1.53993 * 105.13842 * 140.49289 * 12 10 9 14 14 N 1.47908 * 107.05701 * 1.22943 * 13 12 10 15 15 C 1.46902 * 110.99702 * 214.15134 * 14 13 12 16 16 C 1.50697 * 109.46962 * 176.63669 * 15 14 13 17 17 O 1.21280 * 120.00016 * 6.13946 * 16 15 14 18 18 N 1.34773 * 120.00143 * 186.13589 * 16 15 14 19 19 C 1.46503 * 120.00381 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47171 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00517 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46923 * 120.00653 * 24 22 20 27 27 H 1.48498 * 109.47200 * 240.00569 * 24 22 20 28 28 C 1.48527 * 105.81843 * 334.66727 * 14 13 12 29 29 H 1.09003 * 109.46995 * 299.99970 * 1 2 3 30 30 H 1.09001 * 109.47159 * 60.00294 * 1 2 3 31 31 H 1.09004 * 109.46759 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47024 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46988 * 299.99810 * 3 2 1 34 34 H 1.09003 * 109.47286 * 60.00208 * 3 2 1 35 35 H 1.09004 * 109.47060 * 299.99639 * 4 2 1 36 36 H 1.09001 * 109.47304 * 59.99721 * 4 2 1 37 37 H 1.08998 * 109.46928 * 180.02562 * 4 2 1 38 38 H 0.96995 * 119.99987 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.46946 * 60.00168 * 9 8 6 40 40 H 1.09001 * 109.47355 * 299.99907 * 9 8 6 41 41 H 1.08999 * 110.30654 * 21.58275 * 12 10 9 42 42 H 1.08997 * 110.30865 * 259.41311 * 12 10 9 43 43 H 1.08990 * 109.91893 * 241.87441 * 13 12 10 44 44 H 1.09007 * 110.07769 * 120.66857 * 13 12 10 45 45 H 1.09005 * 109.46891 * 56.63808 * 15 14 13 46 46 H 1.08998 * 109.47316 * 296.64042 * 15 14 13 47 47 H 0.97002 * 120.00177 * 0.02562 * 18 16 15 48 48 H 1.09004 * 109.46761 * 300.00145 * 19 18 16 49 49 H 1.08994 * 109.46922 * 59.99728 * 19 18 16 50 50 H 0.96999 * 120.00068 * 179.97438 * 23 22 20 51 51 H 1.09007 * 110.66642 * 157.64827 * 28 14 13 52 52 H 1.09004 * 110.67114 * 280.77056 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9511 -2.5095 0.5040 8 7 2.0682 -2.6656 2.4167 9 6 1.6742 -4.0668 2.5832 10 6 2.2743 -4.6148 3.8795 11 1 3.3585 -4.5016 3.8790 12 6 1.6517 -3.9149 5.1094 13 6 1.4696 -5.0290 6.1568 14 7 1.9906 -6.2769 5.5578 15 6 1.2149 -7.4405 6.0075 16 6 1.7205 -8.6796 5.3147 17 8 2.7062 -8.6211 4.6105 18 7 1.0775 -9.8528 5.4777 19 6 1.5694 -11.0575 4.8046 20 6 0.6795 -12.2239 5.1487 21 1 -0.1681 -12.0821 5.8029 22 6 0.9466 -13.4721 4.6274 23 7 1.9784 -13.6448 3.8303 24 14 -0.1561 -14.9182 5.0544 25 1 -1.2391 -14.4635 5.9630 26 1 -0.7524 -15.4699 3.8114 27 1 0.6464 -15.9707 5.7279 28 6 1.8782 -6.0981 4.0876 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.6277 -2.2367 3.0829 39 1 2.0400 -4.6499 1.7381 40 1 0.5873 -4.1357 2.6289 41 1 0.6871 -3.4794 4.8487 42 1 2.3250 -3.1459 5.4881 43 1 0.4125 -5.1449 6.3956 44 1 2.0302 -4.7885 7.0602 45 1 0.1628 -7.2919 5.7641 46 1 1.3254 -7.5563 7.0857 47 1 0.2890 -9.8995 6.0407 48 1 1.5609 -10.9001 3.7261 49 1 2.5873 -11.2672 5.1332 50 1 2.1666 -14.5230 3.4639 51 1 2.5710 -6.7583 3.5657 52 1 0.8547 -6.2731 3.7559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725810543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:19 Heat of formation + Delta-G solvation = -147.951054 kcal Electronic energy + Delta-G solvation = -29669.035669 eV Core-core repulsion = 25474.231860 eV Total energy + Delta-G solvation = -4194.803809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83162 -40.96237 -39.59013 -38.32115 -36.27213 -36.00705 -34.99802 -34.34873 -33.11803 -30.51050 -29.70825 -28.35940 -28.28172 -27.81070 -26.13246 -24.38846 -23.23949 -22.29100 -21.38114 -21.29006 -20.87479 -19.18828 -18.95096 -17.84244 -17.58505 -17.30697 -17.20277 -16.74259 -16.52901 -16.48422 -15.98808 -15.69503 -15.48366 -15.24534 -15.02546 -14.70577 -14.45882 -14.38308 -14.13679 -13.87328 -13.79477 -13.35141 -13.21909 -13.11364 -12.96182 -12.89719 -12.85623 -12.84651 -12.76494 -12.50682 -12.44770 -12.28983 -12.22434 -12.05411 -11.89869 -11.53332 -11.45540 -11.38753 -11.13053 -10.81528 -10.61534 -10.25593 -9.80889 -9.35869 -8.29653 -6.46222 1.13686 1.42825 1.43913 1.57355 1.75028 1.79950 2.28691 2.48958 3.02758 3.05378 3.14833 3.64924 3.68786 3.76271 3.80533 3.81549 3.95870 4.01719 4.26141 4.30182 4.30973 4.37264 4.50093 4.52298 4.61992 4.62479 4.72553 4.76848 4.77420 4.81778 4.85987 4.89282 4.97237 5.05820 5.09912 5.11712 5.19772 5.22052 5.24806 5.28749 5.31715 5.37034 5.49828 5.57894 5.69578 5.84786 5.87308 6.00888 6.39603 6.65582 6.95275 7.23641 7.33481 7.53705 8.82713 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.001690 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.818695 B =16565.810768 C =17490.455392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.182 4.182 5 O -0.367 6.367 6 C 0.644 3.356 7 O -0.597 6.597 8 N -0.695 5.695 9 C 0.155 3.845 10 C -0.090 4.090 11 H 0.094 0.906 12 C -0.118 4.118 13 C 0.034 3.966 14 N -0.518 5.518 15 C 0.041 3.959 16 C 0.492 3.508 17 O -0.584 6.584 18 N -0.710 5.710 19 C 0.268 3.732 20 C -0.555 4.555 21 H 0.084 0.916 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.985 3.015 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.279 1.279 28 C 0.044 3.956 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.418 0.582 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.129 0.871 47 H 0.408 0.592 48 H -0.015 1.015 49 H -0.014 1.014 50 H 0.268 0.732 51 H 0.066 0.934 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 32.676 0.060 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.397 3.603 7 O -0.488 6.488 8 N -0.355 5.355 9 C 0.032 3.968 10 C -0.110 4.110 11 H 0.112 0.888 12 C -0.156 4.156 13 C -0.093 4.093 14 N -0.243 5.243 15 C -0.090 4.090 16 C 0.279 3.721 17 O -0.465 6.465 18 N -0.361 5.361 19 C 0.145 3.855 20 C -0.593 4.593 21 H 0.102 0.898 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.808 3.192 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.085 4.085 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.146 0.854 47 H 0.243 0.757 48 H 0.003 0.997 49 H 0.004 0.996 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.115 32.289 -0.817 32.449 hybrid contribution -0.987 -1.252 -0.082 1.596 sum -4.101 31.036 -0.899 31.319 Atomic orbital electron populations 1.22472 0.93980 1.03566 1.03672 1.22407 0.94590 0.92753 0.81388 1.21882 1.02440 0.90482 1.04400 1.22486 1.01629 1.02139 0.97626 1.86306 1.71560 1.22907 1.47339 1.18292 0.78780 0.80912 0.82317 1.90917 1.42417 1.71112 1.44343 1.44586 1.55271 1.12283 1.23357 1.21193 0.99642 0.78656 0.97350 1.22175 1.01598 0.93669 0.93561 0.88788 1.22498 1.02043 0.97664 0.93358 1.23024 0.99561 0.87949 0.98766 1.64527 1.51614 1.02336 1.05794 1.22190 0.97007 0.87939 1.01900 1.21358 0.83455 0.85750 0.81578 1.90623 1.28138 1.86318 1.41410 1.46190 1.31354 1.08620 1.49914 1.18501 0.93830 0.82316 0.90856 1.21668 1.13236 0.93536 1.30887 0.89755 1.26079 0.96886 1.02449 0.94271 1.70151 1.29412 1.24659 1.32777 0.85104 0.78341 0.77506 0.78216 1.17559 1.20566 1.20452 1.23150 0.99832 0.96117 0.89388 0.91666 0.89226 0.92201 0.91204 0.88091 0.90937 0.92281 0.89155 0.91994 0.74441 0.92474 0.91298 0.90170 0.88536 0.92151 0.88880 0.89629 0.85353 0.75670 0.99659 0.99586 0.92294 0.91518 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 71.98 0.60 -2.18 16 2 C 0.12 1.94 1.13 -10.79 -0.01 1.93 16 3 C -0.14 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 5 O -0.37 -7.01 9.94 -55.40 -0.55 -7.56 16 6 C 0.64 14.37 8.06 129.79 1.05 15.41 16 7 O -0.60 -16.96 11.88 19.80 0.24 -16.73 16 8 N -0.69 -12.00 5.41 -590.85 -3.19 -15.20 16 9 C 0.15 3.01 5.02 86.38 0.43 3.44 16 10 C -0.09 -1.67 3.12 -9.59 -0.03 -1.70 16 11 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.12 -1.54 6.20 31.47 0.19 -1.34 16 13 C 0.03 0.55 6.70 86.44 0.58 1.13 16 14 N -0.52 -13.17 5.11 -887.57 -4.54 -17.71 16 15 C 0.04 1.05 5.31 85.56 0.45 1.51 16 16 C 0.49 19.42 7.46 87.66 0.65 20.07 16 17 O -0.58 -28.75 14.30 -3.03 -0.04 -28.80 16 18 N -0.71 -29.77 5.55 -466.80 -2.59 -32.36 16 19 C 0.27 14.81 5.43 85.63 0.46 15.27 16 20 C -0.56 -30.32 9.28 25.60 0.24 -30.08 16 21 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 22 C 0.00 0.15 5.46 84.65 0.46 0.61 16 23 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 24 Si 0.99 42.49 29.54 68.60 2.03 44.52 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.04 1.17 5.04 86.65 0.44 1.60 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.31 5.88 -2.38 -0.01 1.29 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 1.36 5.88 -2.38 -0.01 1.34 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 5.02 8.44 -92.71 -0.78 4.24 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 41 H 0.08 0.94 7.80 -2.39 -0.02 0.92 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.82 7.68 -2.39 -0.02 0.80 16 44 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.09 1.79 7.98 -2.38 -0.02 1.77 16 46 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 48 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 50 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 51 H 0.07 2.38 6.43 -2.38 -0.02 2.36 16 52 H 0.04 1.12 7.92 -2.38 -0.02 1.10 16 Total: -1.00 -78.38 414.41 -2.24 -80.62 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.64 Total: 26.87 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.76 Total: 22.70 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -10.03 Total: -121.62 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.36 Total: -53.08 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.38 -2.24 -80.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725810543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.329 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds