Wall clock time and date at job start Wed Apr 1 2020 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47487 * 239.99979 * 2 1 3 5 5 O 1.45210 * 109.47201 * 119.99611 * 2 1 3 6 6 C 1.34634 * 116.99448 * 60.00261 * 5 2 1 7 7 O 1.21509 * 120.00319 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99812 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99994 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47070 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.62573 * 51.89133 * 10 9 8 12 12 C 1.55131 * 110.70614 * 288.59793 * 10 9 8 13 13 C 1.54908 * 101.65383 * 205.96365 * 12 10 9 14 14 N 1.47837 * 104.79617 * 37.06743 * 13 12 10 15 15 C 1.46893 * 111.00237 * 213.63744 * 14 13 12 16 16 C 1.50707 * 109.47264 * 290.84248 * 15 14 13 17 17 O 1.21281 * 119.99523 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99778 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.47444 * 108.56891 * 335.90998 * 14 13 12 29 29 H 1.08989 * 109.47574 * 300.00155 * 1 2 3 30 30 H 1.09009 * 109.47134 * 60.00347 * 1 2 3 31 31 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47113 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46760 * 299.99571 * 3 2 1 34 34 H 1.09001 * 109.46892 * 60.00187 * 3 2 1 35 35 H 1.09000 * 109.46789 * 299.99888 * 4 2 1 36 36 H 1.08998 * 109.47174 * 60.00241 * 4 2 1 37 37 H 1.09001 * 109.46895 * 180.02562 * 4 2 1 38 38 H 0.97000 * 120.00006 * 359.97438 * 8 6 5 39 39 H 1.08994 * 109.47514 * 59.99715 * 9 8 6 40 40 H 1.08999 * 109.47167 * 299.99453 * 9 8 6 41 41 H 1.08999 * 110.99550 * 324.05689 * 12 10 9 42 42 H 1.09001 * 110.99388 * 87.87158 * 12 10 9 43 43 H 1.09005 * 110.37254 * 278.23844 * 13 12 10 44 44 H 1.09001 * 110.37157 * 155.90355 * 13 12 10 45 45 H 1.09005 * 109.47251 * 170.84382 * 15 14 13 46 46 H 1.09002 * 109.47321 * 50.84298 * 15 14 13 47 47 H 0.97000 * 120.00556 * 0.02562 * 18 16 15 48 48 H 1.09005 * 109.46943 * 60.00092 * 19 18 16 49 49 H 1.09002 * 109.47064 * 300.00355 * 19 18 16 50 50 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.89259 * 120.39124 * 28 14 13 52 52 H 1.08998 * 109.88522 * 241.42173 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4172 9 6 1.6740 -4.0668 2.5832 10 6 2.2740 -4.6148 3.8796 11 1 2.0354 -3.9617 4.7192 12 6 3.8082 -4.7967 3.7400 13 6 4.0861 -5.9153 4.7750 14 7 2.9182 -6.8167 4.6795 15 6 2.5957 -7.4009 5.9881 16 6 3.6797 -8.3689 6.3871 17 8 4.6278 -8.5535 5.6536 18 7 3.5960 -9.0286 7.5593 19 6 4.6495 -9.9701 7.9468 20 6 4.3193 -10.5683 9.2900 21 1 3.4150 -10.2768 9.8034 22 6 5.1718 -11.4879 9.8634 23 7 4.8834 -12.0104 11.0353 24 14 6.7363 -11.9915 8.9757 25 1 6.4573 -13.1631 8.1069 26 1 7.2184 -10.8609 8.1423 27 1 7.7770 -12.3509 9.9722 28 6 1.7764 -6.0509 4.1468 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.6267 -2.2364 3.0834 39 1 2.0412 -4.6497 1.7385 40 1 0.5871 -4.1365 2.6276 41 1 4.0730 -5.1213 2.7337 42 1 4.3358 -3.8803 4.0044 43 1 4.1598 -5.4945 5.7779 44 1 5.0006 -6.4504 4.5190 45 1 1.6433 -7.9274 5.9262 46 1 2.5248 -6.6078 6.7326 47 1 2.8379 -8.8807 8.1461 48 1 5.6023 -9.4440 8.0081 49 1 4.7197 -10.7633 7.2026 50 1 5.4829 -12.6576 11.4385 51 1 1.4287 -6.5018 3.2174 52 1 0.9672 -6.0357 4.8769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725810544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:23 Heat of formation + Delta-G solvation = -118.195032 kcal Electronic energy + Delta-G solvation = -29424.148866 eV Core-core repulsion = 25230.635375 eV Total energy + Delta-G solvation = -4193.513491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12221 -39.83389 -38.49344 -37.57178 -35.36220 -34.41307 -34.20644 -32.44329 -32.14654 -29.73132 -28.56577 -27.83892 -27.78569 -26.75816 -25.01247 -22.55344 -22.18325 -21.14089 -20.99383 -20.15745 -19.84138 -18.47427 -17.51601 -17.02314 -16.64409 -16.34881 -16.05494 -15.68164 -15.23512 -15.10367 -14.93065 -14.78745 -14.44743 -14.18144 -13.90062 -13.81315 -13.74482 -13.17485 -12.95661 -12.89522 -12.70757 -12.51796 -12.38445 -12.32329 -12.31946 -12.23010 -11.91691 -11.86430 -11.72578 -11.48886 -11.35099 -11.15987 -11.02554 -10.91411 -10.75887 -10.73414 -10.40586 -9.97633 -9.54751 -9.50285 -9.17629 -8.78217 -8.33228 -8.11688 -6.22340 -4.24545 1.79838 2.50786 3.24317 3.27965 3.33088 3.41626 3.58444 3.74344 4.16257 4.23701 4.28575 4.31514 4.33190 4.33986 4.47462 4.57986 4.93606 5.03875 5.04257 5.09488 5.11387 5.13169 5.15931 5.20398 5.26245 5.33668 5.34965 5.36411 5.42359 5.43500 5.48481 5.55309 5.55938 5.63921 5.74537 5.79220 5.87407 5.96726 6.03488 6.14169 6.16808 6.76443 6.88120 6.92624 7.04355 7.07507 7.24631 7.39611 8.03205 8.14410 8.52306 8.75103 8.96919 9.38122 10.89608 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.001482 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.532090 B =18892.414878 C =19107.227666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.649 3.351 7 O -0.568 6.568 8 N -0.709 5.709 9 C 0.149 3.851 10 C -0.124 4.124 11 H 0.085 0.915 12 C -0.125 4.125 13 C 0.048 3.952 14 N -0.508 5.508 15 C 0.030 3.970 16 C 0.500 3.500 17 O -0.541 6.541 18 N -0.709 5.709 19 C 0.222 3.778 20 C -0.544 4.544 21 H 0.079 0.921 22 C 0.078 3.922 23 N -0.893 5.893 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.261 1.261 27 H -0.284 1.284 28 C 0.052 3.948 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.061 0.939 47 H 0.395 0.605 48 H 0.024 0.976 49 H 0.020 0.980 50 H 0.267 0.733 51 H 0.084 0.916 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 27.038 -20.277 34.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.457 6.457 8 N -0.369 5.369 9 C 0.027 3.973 10 C -0.144 4.144 11 H 0.103 0.897 12 C -0.164 4.164 13 C -0.080 4.080 14 N -0.232 5.232 15 C -0.101 4.101 16 C 0.284 3.716 17 O -0.418 6.418 18 N -0.359 5.359 19 C 0.100 3.900 20 C -0.582 4.582 21 H 0.097 0.903 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.185 1.185 27 H -0.209 1.209 28 C -0.077 4.077 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.228 0.772 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.077 0.923 51 H 0.102 0.898 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.422 26.118 -21.440 34.824 hybrid contribution 0.406 0.512 0.932 1.138 sum -8.016 26.630 -20.508 34.554 Atomic orbital electron populations 1.22517 0.93958 1.05101 1.02511 1.22077 0.94378 0.91507 0.82056 1.21871 1.02316 0.92501 1.03157 1.22521 1.01617 1.03537 0.96443 1.86303 1.71594 1.23661 1.46549 1.18084 0.78924 0.80518 0.82257 1.90912 1.41076 1.70463 1.43249 1.44743 1.55672 1.12769 1.23678 1.21354 0.99934 0.78528 0.97505 1.22678 0.96767 0.97810 0.97157 0.89668 1.22861 0.93915 0.98740 1.00834 1.23095 0.95452 0.91955 0.97448 1.63296 1.03956 1.32451 1.23516 1.22262 0.98970 0.97901 0.90992 1.20338 0.87387 0.82001 0.81858 1.90640 1.33930 1.65415 1.51838 1.46168 1.26583 1.43585 1.19523 1.19460 0.86796 0.87928 0.95801 1.21104 1.09860 1.25264 1.01968 0.90287 1.24800 0.97959 0.95190 0.94664 1.69883 1.37786 1.29194 1.16137 0.86810 0.83104 0.79928 0.79796 1.19829 1.18530 1.20924 1.22807 0.93306 0.90363 1.01178 0.92181 0.91102 0.89353 0.91423 0.90087 0.91463 0.89342 0.91100 0.92127 0.75941 0.90507 0.90891 0.90174 0.90814 0.93766 0.88694 0.88142 0.92118 0.77166 0.95842 0.96179 0.92268 0.89757 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.37 37.15 0.31 -1.01 16 2 C 0.14 1.01 1.13 -90.62 -0.10 0.91 16 3 C -0.14 -0.70 8.85 37.16 0.33 -0.37 16 4 C -0.18 -1.36 8.37 37.16 0.31 -1.05 16 5 O -0.37 -3.30 9.94 -40.31 -0.40 -3.70 16 6 C 0.65 6.40 8.06 54.05 0.44 6.83 16 7 O -0.57 -6.88 11.88 -19.28 -0.23 -7.11 16 8 N -0.71 -5.34 5.48 -65.28 -0.36 -5.69 16 9 C 0.15 1.10 4.97 -4.04 -0.02 1.08 16 10 C -0.12 -0.88 2.96 -88.80 -0.26 -1.15 16 11 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.13 -1.06 6.44 -24.60 -0.16 -1.22 16 13 C 0.05 0.57 5.74 -2.30 -0.01 0.56 16 14 N -0.51 -6.41 4.86 -232.69 -1.13 -7.54 16 15 C 0.03 0.39 5.05 -4.98 -0.03 0.37 16 16 C 0.50 9.25 7.63 -10.98 -0.08 9.17 16 17 O -0.54 -12.06 15.04 5.56 0.08 -11.98 16 18 N -0.71 -14.05 5.55 -61.47 -0.34 -14.39 16 19 C 0.22 5.44 4.50 -5.19 -0.02 5.41 16 20 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 21 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 23 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 24 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.05 0.46 6.46 -2.84 -0.02 0.44 16 29 H 0.06 0.41 8.14 -51.94 -0.42 -0.02 16 30 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.84 5.88 -51.93 -0.31 0.53 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.86 5.88 -51.93 -0.31 0.56 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.41 2.32 8.58 -40.82 -0.35 1.97 16 39 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.52 7.62 -51.93 -0.40 0.13 16 44 H 0.09 1.41 7.38 -51.93 -0.38 1.03 16 45 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 46 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 47 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 48 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 49 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 52 H 0.06 0.47 7.55 -51.93 -0.39 0.07 16 LS Contribution 411.94 15.07 6.21 6.21 Total: -1.00 -34.04 411.94 -8.92 -42.96 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.10 Total: 3.22 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.24 Total: 6.89 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -1.06 Total: -53.26 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.55 Total: -22.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.04 -8.92 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725810544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.231 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds