Wall clock time and date at job start Wed Apr 1 2020 00:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47487 * 239.99979 * 2 1 3 5 5 O 1.45210 * 109.47201 * 119.99611 * 2 1 3 6 6 C 1.34634 * 116.99448 * 60.00261 * 5 2 1 7 7 O 1.21509 * 120.00319 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99812 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99994 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47070 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.62573 * 51.89133 * 10 9 8 12 12 C 1.55131 * 110.70614 * 288.59793 * 10 9 8 13 13 C 1.54908 * 101.65383 * 205.96365 * 12 10 9 14 14 N 1.47837 * 104.79617 * 37.06743 * 13 12 10 15 15 C 1.46893 * 111.00237 * 213.63744 * 14 13 12 16 16 C 1.50707 * 109.47264 * 290.84248 * 15 14 13 17 17 O 1.21281 * 119.99523 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99778 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.47444 * 108.56891 * 335.90998 * 14 13 12 29 29 H 1.08989 * 109.47574 * 300.00155 * 1 2 3 30 30 H 1.09009 * 109.47134 * 60.00347 * 1 2 3 31 31 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47113 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46760 * 299.99571 * 3 2 1 34 34 H 1.09001 * 109.46892 * 60.00187 * 3 2 1 35 35 H 1.09000 * 109.46789 * 299.99888 * 4 2 1 36 36 H 1.08998 * 109.47174 * 60.00241 * 4 2 1 37 37 H 1.09001 * 109.46895 * 180.02562 * 4 2 1 38 38 H 0.97000 * 120.00006 * 359.97438 * 8 6 5 39 39 H 1.08994 * 109.47514 * 59.99715 * 9 8 6 40 40 H 1.08999 * 109.47167 * 299.99453 * 9 8 6 41 41 H 1.08999 * 110.99550 * 324.05689 * 12 10 9 42 42 H 1.09001 * 110.99388 * 87.87158 * 12 10 9 43 43 H 1.09005 * 110.37254 * 278.23844 * 13 12 10 44 44 H 1.09001 * 110.37157 * 155.90355 * 13 12 10 45 45 H 1.09005 * 109.47251 * 170.84382 * 15 14 13 46 46 H 1.09002 * 109.47321 * 50.84298 * 15 14 13 47 47 H 0.97000 * 120.00556 * 0.02562 * 18 16 15 48 48 H 1.09005 * 109.46943 * 60.00092 * 19 18 16 49 49 H 1.09002 * 109.47064 * 300.00355 * 19 18 16 50 50 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.89259 * 120.39124 * 28 14 13 52 52 H 1.08998 * 109.88522 * 241.42173 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4172 9 6 1.6740 -4.0668 2.5832 10 6 2.2740 -4.6148 3.8796 11 1 2.0354 -3.9617 4.7192 12 6 3.8082 -4.7967 3.7400 13 6 4.0861 -5.9153 4.7750 14 7 2.9182 -6.8167 4.6795 15 6 2.5957 -7.4009 5.9881 16 6 3.6797 -8.3689 6.3871 17 8 4.6278 -8.5535 5.6536 18 7 3.5960 -9.0286 7.5593 19 6 4.6495 -9.9701 7.9468 20 6 4.3193 -10.5683 9.2900 21 1 3.4150 -10.2768 9.8034 22 6 5.1718 -11.4879 9.8634 23 7 4.8834 -12.0104 11.0353 24 14 6.7363 -11.9915 8.9757 25 1 6.4573 -13.1631 8.1069 26 1 7.2184 -10.8609 8.1423 27 1 7.7770 -12.3509 9.9722 28 6 1.7764 -6.0509 4.1468 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.6267 -2.2364 3.0834 39 1 2.0412 -4.6497 1.7385 40 1 0.5871 -4.1365 2.6276 41 1 4.0730 -5.1213 2.7337 42 1 4.3358 -3.8803 4.0044 43 1 4.1598 -5.4945 5.7779 44 1 5.0006 -6.4504 4.5190 45 1 1.6433 -7.9274 5.9262 46 1 2.5248 -6.6078 6.7326 47 1 2.8379 -8.8807 8.1461 48 1 5.6023 -9.4440 8.0081 49 1 4.7197 -10.7633 7.2026 50 1 5.4829 -12.6576 11.4385 51 1 1.4287 -6.5018 3.2174 52 1 0.9672 -6.0357 4.8769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725810544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:22 Heat of formation + Delta-G solvation = -145.052059 kcal Electronic energy + Delta-G solvation = -29425.313474 eV Core-core repulsion = 25230.635375 eV Total energy + Delta-G solvation = -4194.678099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80016 -40.93000 -39.65118 -38.31402 -36.24943 -35.96828 -34.97281 -34.39229 -33.08505 -30.59826 -30.18294 -28.34605 -28.27961 -27.93562 -25.90385 -23.98010 -23.20222 -22.17415 -21.65550 -21.35384 -20.80411 -19.20517 -19.12349 -17.99548 -17.58815 -17.34871 -17.23126 -16.72894 -16.51024 -16.26313 -15.89884 -15.68561 -15.46391 -15.21815 -14.97974 -14.79735 -14.64609 -14.39937 -14.22334 -14.12106 -13.72868 -13.36515 -13.30658 -13.10632 -13.01999 -12.96663 -12.88906 -12.84383 -12.71198 -12.48942 -12.35938 -12.28047 -12.08343 -11.93983 -11.87480 -11.65519 -11.65130 -11.37120 -11.11022 -10.91963 -10.69100 -10.19665 -9.88815 -9.23121 -8.40303 -6.46919 1.18563 1.32104 1.34513 1.46827 1.78207 1.80082 2.27476 2.35729 2.95303 3.12598 3.15505 3.54773 3.61236 3.76947 3.81846 3.88950 3.96720 4.00862 4.25557 4.32135 4.35543 4.41097 4.49447 4.54842 4.61789 4.63210 4.69973 4.78409 4.79677 4.81829 4.84968 4.87988 4.89708 4.96832 5.04018 5.04752 5.09762 5.17123 5.23251 5.27052 5.29698 5.33407 5.39563 5.56320 5.60467 5.93785 6.05568 6.13163 6.41579 6.54509 6.91044 7.16809 7.35926 7.48845 8.74367 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.001482 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.532090 B =18892.414878 C =19107.227666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.699 5.699 9 C 0.156 3.844 10 C -0.106 4.106 11 H 0.106 0.894 12 C -0.117 4.117 13 C 0.046 3.954 14 N -0.535 5.535 15 C 0.043 3.957 16 C 0.497 3.503 17 O -0.582 6.582 18 N -0.709 5.709 19 C 0.234 3.766 20 C -0.546 4.546 21 H 0.061 0.939 22 C 0.027 3.973 23 N -0.931 5.931 24 Si 0.937 3.063 25 H -0.266 1.266 26 H -0.262 1.262 27 H -0.273 1.273 28 C 0.051 3.949 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.126 0.874 46 H 0.089 0.911 47 H 0.408 0.592 48 H 0.010 0.990 49 H 0.008 0.992 50 H 0.272 0.728 51 H 0.083 0.917 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 29.225 -21.049 37.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.359 5.359 9 C 0.033 3.967 10 C -0.126 4.126 11 H 0.124 0.876 12 C -0.155 4.155 13 C -0.081 4.081 14 N -0.259 5.259 15 C -0.088 4.088 16 C 0.284 3.716 17 O -0.462 6.462 18 N -0.360 5.360 19 C 0.110 3.890 20 C -0.584 4.584 21 H 0.079 0.921 22 C -0.173 4.173 23 N -0.570 5.570 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.186 1.186 27 H -0.198 1.198 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.253 0.747 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.144 0.856 46 H 0.107 0.893 47 H 0.244 0.756 48 H 0.028 0.972 49 H 0.026 0.974 50 H 0.081 0.919 51 H 0.101 0.899 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.103 28.337 -22.198 37.129 hybrid contribution 0.566 -0.148 1.147 1.287 sum -8.537 28.188 -21.052 36.203 Atomic orbital electron populations 1.22468 0.93938 1.03687 1.03577 1.22381 0.94584 0.92636 0.81468 1.21890 1.02403 0.90764 1.04311 1.22478 1.01576 1.02232 0.97485 1.86312 1.71604 1.23208 1.47324 1.18301 0.78801 0.80814 0.82424 1.90905 1.42342 1.71044 1.44315 1.44691 1.55273 1.12661 1.23257 1.21262 1.00030 0.78255 0.97160 1.22540 0.95273 0.97204 0.97558 0.87598 1.22796 0.95256 0.98226 0.99200 1.22993 0.94088 0.92498 0.98551 1.63173 1.05435 1.33906 1.23408 1.22207 0.97209 0.97368 0.92059 1.21362 0.88021 0.81804 0.80455 1.90626 1.36019 1.66701 1.52861 1.46025 1.26088 1.43223 1.20658 1.19032 0.87699 0.88275 0.93971 1.21315 1.09118 1.25093 1.02906 0.92124 1.25581 1.01040 0.95356 0.95314 1.69980 1.39253 1.30151 1.17567 0.85873 0.79675 0.79543 0.78869 1.19144 1.18635 1.19757 1.22855 0.92511 0.90728 1.01541 0.91857 0.89292 0.91908 0.91290 0.88124 0.91123 0.91978 0.89248 0.92081 0.74690 0.91810 0.90612 0.91168 0.88829 0.93507 0.92535 0.85619 0.89297 0.75611 0.97212 0.97444 0.91867 0.89855 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 71.98 0.60 -1.80 16 2 C 0.13 1.70 1.13 -10.79 -0.01 1.69 16 3 C -0.14 -1.06 8.85 71.98 0.64 -0.42 16 4 C -0.18 -2.54 8.37 71.98 0.60 -1.93 16 5 O -0.37 -6.27 9.94 -55.44 -0.55 -6.83 16 6 C 0.64 12.20 8.06 129.79 1.05 13.25 16 7 O -0.59 -14.46 11.88 19.81 0.24 -14.23 16 8 N -0.70 -9.35 5.48 -590.86 -3.24 -12.59 16 9 C 0.16 2.02 4.97 86.38 0.43 2.45 16 10 C -0.11 -1.22 2.96 -9.61 -0.03 -1.25 16 11 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 12 C -0.12 -1.77 6.44 31.98 0.21 -1.57 16 13 C 0.05 1.07 5.74 86.78 0.50 1.57 16 14 N -0.53 -12.57 4.86 -890.11 -4.33 -16.90 16 15 C 0.04 1.00 5.05 85.56 0.43 1.44 16 16 C 0.50 18.00 7.63 87.66 0.67 18.67 16 17 O -0.58 -26.22 15.04 -3.03 -0.05 -26.26 16 18 N -0.71 -27.71 5.55 -466.77 -2.59 -30.30 16 19 C 0.23 11.50 4.50 85.63 0.38 11.89 16 20 C -0.55 -30.09 9.83 25.60 0.25 -29.84 16 21 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 22 C 0.03 1.55 5.47 84.66 0.46 2.02 16 23 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 24 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 C 0.05 0.77 6.46 86.65 0.56 1.33 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 1.19 5.88 -2.39 -0.01 1.18 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 1.23 5.88 -2.39 -0.01 1.22 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.42 3.76 8.58 -92.71 -0.80 2.97 16 39 H 0.06 1.03 8.00 -2.39 -0.02 1.01 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.22 7.94 -2.39 -0.02 1.20 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.04 7.62 -2.38 -0.02 1.02 16 44 H 0.06 1.73 7.38 -2.39 -0.02 1.72 16 45 H 0.13 2.37 8.03 -2.38 -0.02 2.35 16 46 H 0.09 1.65 7.85 -2.39 -0.02 1.63 16 47 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 48 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 49 H 0.01 0.39 7.57 -2.39 -0.02 0.38 16 50 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16 52 H 0.08 0.92 7.55 -2.39 -0.02 0.90 16 Total: -1.00 -75.68 411.94 -2.29 -77.97 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.70 Total: 20.61 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.74 Total: 17.48 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -9.85 Total: -114.96 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.36 Total: -47.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -75.68 -2.29 -77.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725810544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.081 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds