Wall clock time and date at job start Wed Apr 1 2020 00:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47186 * 2 1 4 4 C 1.53001 * 109.47382 * 239.99954 * 2 1 3 5 5 O 1.45206 * 109.47346 * 119.99789 * 2 1 3 6 6 C 1.34640 * 116.99592 * 59.99943 * 5 2 1 7 7 O 1.21511 * 120.00057 * 0.27790 * 6 5 2 8 8 N 1.34777 * 119.99739 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99809 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46932 * 174.59795 * 9 8 6 11 11 H 1.08996 * 109.58790 * 308.74306 * 10 9 8 12 12 C 1.53195 * 109.58531 * 188.45512 * 10 9 8 13 13 C 1.53044 * 109.31225 * 185.57863 * 12 10 9 14 14 C 1.53043 * 109.53989 * 61.36639 * 13 12 10 15 15 C 1.53191 * 109.31048 * 298.63452 * 14 13 12 16 16 N 1.46930 * 109.58697 * 69.02551 * 10 9 8 17 17 C 1.34767 * 120.63036 * 353.39587 * 16 10 9 18 18 O 1.21590 * 120.00168 * 6.03492 * 17 16 10 19 19 N 1.34778 * 120.00384 * 186.04109 * 17 16 10 20 20 C 1.46499 * 120.00687 * 175.00302 * 19 17 16 21 21 C 1.50695 * 109.47558 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99694 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00299 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99713 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47430 * 89.99770 * 25 23 21 27 27 H 1.48500 * 109.47331 * 209.99464 * 25 23 21 28 28 H 1.48494 * 109.47355 * 329.99605 * 25 23 21 29 29 H 1.09006 * 109.46996 * 299.99836 * 1 2 3 30 30 H 1.08997 * 109.47145 * 60.00062 * 1 2 3 31 31 H 1.08996 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47238 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47027 * 300.00010 * 3 2 1 34 34 H 1.09000 * 109.46625 * 60.00027 * 3 2 1 35 35 H 1.08996 * 109.46757 * 300.00197 * 4 2 1 36 36 H 1.09007 * 109.46961 * 59.99912 * 4 2 1 37 37 H 1.08997 * 109.47403 * 179.97438 * 4 2 1 38 38 H 0.96994 * 119.99760 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.47189 * 294.59638 * 9 8 6 40 40 H 1.08995 * 109.47311 * 54.59985 * 9 8 6 41 41 H 1.09001 * 109.50092 * 305.53034 * 12 10 9 42 42 H 1.09002 * 109.49607 * 65.63285 * 12 10 9 43 43 H 1.09002 * 109.46144 * 181.38858 * 13 12 10 44 44 H 1.09009 * 109.45956 * 301.36054 * 13 12 10 45 45 H 1.08998 * 109.49257 * 58.58367 * 14 13 12 46 46 H 1.08990 * 109.49789 * 178.68096 * 14 13 12 47 47 H 1.08999 * 109.58317 * 174.41853 * 15 14 13 48 48 H 1.08993 * 109.58829 * 294.84553 * 15 14 13 49 49 H 0.97002 * 119.99302 * 354.99110 * 19 17 16 50 50 H 1.09003 * 109.46842 * 299.99916 * 20 19 17 51 51 H 1.09003 * 109.47262 * 59.99130 * 20 19 17 52 52 H 0.96998 * 119.99392 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9554 -2.5110 0.5013 8 7 2.0681 -2.6657 2.4167 9 6 1.6749 -4.0671 2.5826 10 6 2.3830 -4.6541 3.8052 11 1 3.4528 -4.4561 3.7380 12 6 2.1430 -6.1661 3.8610 13 6 2.7346 -6.7251 5.1571 14 6 2.0375 -6.0808 6.3575 15 6 2.2763 -4.5678 6.3301 16 7 1.8447 -4.0416 5.0275 17 6 0.9694 -3.0195 4.9552 18 8 0.5336 -2.6674 3.8760 19 7 0.5771 -2.3873 6.0790 20 6 -0.2877 -1.2080 5.9924 21 6 -0.5780 -0.6949 7.3792 22 1 -0.1604 -1.1973 8.2393 23 6 -1.3767 0.4159 7.5502 24 7 -1.8848 1.0280 6.5028 25 14 -1.7359 1.0523 9.2693 26 1 -0.7008 2.0442 9.6563 27 1 -3.0726 1.6989 9.2885 28 1 -1.7200 -0.0801 10.2297 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 2.6277 -2.2368 3.0828 39 1 0.5958 -4.1274 2.7240 40 1 1.9570 -4.6313 1.6938 41 1 1.0718 -6.3657 3.8343 42 1 2.6238 -6.6425 3.0066 43 1 2.5869 -7.8046 5.1877 44 1 3.8012 -6.5032 5.1947 45 1 0.9672 -6.2811 6.3073 46 1 2.4430 -6.4964 7.2799 47 1 1.7013 -4.0927 7.1249 48 1 3.3374 -4.3628 6.4712 49 1 0.8673 -2.7134 6.9452 50 1 0.2137 -0.4314 5.4148 51 1 -1.2230 -1.4785 5.5022 52 1 -2.4464 1.8096 6.6232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787355451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:33 Heat of formation + Delta-G solvation = -84.866191 kcal Electronic energy + Delta-G solvation = -32307.620988 eV Core-core repulsion = 28115.552744 eV Total energy + Delta-G solvation = -4192.068244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65217 -39.96814 -37.26218 -36.94609 -34.99557 -33.88410 -33.48252 -32.83928 -31.93924 -31.24308 -27.39732 -27.24540 -27.11346 -26.41400 -24.49775 -23.04680 -22.20595 -21.34646 -20.71953 -19.72015 -19.25498 -18.11876 -17.26553 -16.27774 -16.18990 -15.84890 -15.65369 -15.27244 -14.83622 -14.73843 -14.58173 -14.32902 -14.08897 -14.00331 -13.83353 -13.41653 -13.23173 -12.98322 -12.66940 -12.55888 -12.34085 -12.20518 -11.96560 -11.87076 -11.79365 -11.68120 -11.59193 -11.29026 -11.15118 -11.07108 -11.00014 -10.94864 -10.87743 -10.78513 -10.69832 -10.25685 -10.00864 -9.59605 -9.36194 -8.91668 -8.75160 -8.61547 -8.07020 -7.67004 -6.14933 -4.21660 2.66693 3.07826 3.24160 3.30735 3.32948 3.48946 3.86652 4.30249 4.47619 4.52226 4.67642 4.80360 4.84737 4.94475 4.98147 5.01849 5.12885 5.16089 5.17962 5.21188 5.36679 5.52172 5.59411 5.62048 5.69354 5.72679 5.77566 5.79442 5.80603 5.90716 5.92184 5.93250 6.00472 6.10403 6.16357 6.17391 6.38323 6.44828 6.62656 6.75383 6.86730 7.01337 7.11606 7.51623 7.54786 7.58235 7.84210 7.98838 8.02461 8.75884 8.89345 8.97028 9.32455 9.48035 10.95073 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006877 B = 0.004639 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4070.450871 B = 6034.638876 C = 9665.554077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.658 3.342 7 O -0.585 6.585 8 N -0.669 5.669 9 C 0.154 3.846 10 C 0.155 3.845 11 H 0.071 0.929 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.114 3.886 16 N -0.639 5.639 17 C 0.685 3.315 18 O -0.573 6.573 19 N -0.729 5.729 20 C 0.270 3.730 21 C -0.542 4.542 22 H 0.060 0.940 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.902 3.098 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.383 0.617 50 H 0.023 0.977 51 H 0.023 0.977 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -11.052 -7.082 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.412 3.588 7 O -0.476 6.476 8 N -0.325 5.325 9 C 0.031 3.969 10 C 0.050 3.950 11 H 0.089 0.911 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.175 4.175 15 C -0.009 4.009 16 N -0.380 5.380 17 C 0.387 3.613 18 O -0.451 6.451 19 N -0.383 5.383 20 C 0.149 3.851 21 C -0.580 4.580 22 H 0.079 0.921 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.730 3.270 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.218 0.782 50 H 0.041 0.959 51 H 0.041 0.959 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.630 -10.758 -8.382 17.923 hybrid contribution 0.034 0.518 1.807 1.880 sum 11.664 -10.240 -6.574 16.856 Atomic orbital electron populations 1.22485 0.93998 1.05189 1.02266 1.21923 0.94508 0.91266 0.82171 1.21848 1.01759 0.93104 1.03078 1.22506 1.01015 1.03636 0.96594 1.86289 1.71611 1.24251 1.46062 1.17847 0.78630 0.80060 0.82302 1.90808 1.41927 1.70557 1.44345 1.44370 1.53717 1.12113 1.22326 1.21358 1.02296 0.78679 0.94570 1.21221 0.97224 0.92519 0.84041 0.91085 1.21897 1.02441 0.94071 0.98273 1.21469 0.99791 0.99779 0.94250 1.21932 1.01657 0.95371 0.98495 1.21558 0.99957 0.93897 0.85531 1.47372 1.48501 1.36280 1.05857 1.16214 0.79975 0.79557 0.85562 1.91026 1.59538 1.68478 1.26023 1.45972 1.53813 1.32591 1.05939 1.18926 0.88645 0.80504 0.97049 1.21204 1.31912 1.13030 0.91889 0.92145 1.24928 0.95370 0.96268 0.97348 1.69986 1.32698 1.20195 1.29241 0.86441 0.77764 0.79031 0.83809 1.20494 1.21027 1.19810 0.91749 0.91823 0.89338 0.91868 0.90541 0.91242 0.89356 0.91636 0.92646 0.76827 0.88590 0.92395 0.90925 0.90644 0.91680 0.91823 0.91325 0.90921 0.90008 0.91815 0.78205 0.95941 0.95868 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 2 C 0.14 2.12 1.13 -90.62 -0.10 2.02 16 3 C -0.14 -1.74 8.85 37.16 0.33 -1.41 16 4 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 5 O -0.37 -6.71 9.94 -40.32 -0.40 -7.11 16 6 C 0.66 12.59 7.76 54.06 0.42 13.01 16 7 O -0.59 -11.98 11.87 -19.28 -0.23 -12.21 16 8 N -0.67 -11.46 3.20 -65.29 -0.21 -11.66 16 9 C 0.15 2.32 4.29 -4.05 -0.02 2.30 16 10 C 0.15 1.84 2.93 -67.60 -0.20 1.64 16 11 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 12 C -0.13 -1.19 5.36 -26.61 -0.14 -1.34 16 13 C -0.12 -0.91 5.88 -26.69 -0.16 -1.06 16 14 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 15 C 0.11 1.24 6.38 -3.69 -0.02 1.21 16 16 N -0.64 -8.89 2.98 -170.88 -0.51 -9.40 16 17 C 0.69 13.10 7.66 -86.93 -0.67 12.44 16 18 O -0.57 -12.78 10.12 5.29 0.05 -12.72 16 19 N -0.73 -15.09 5.46 -66.42 -0.36 -15.45 16 20 C 0.27 7.12 5.43 -5.20 -0.03 7.09 16 21 C -0.54 -14.64 9.28 -34.44 -0.32 -14.95 16 22 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 23 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.88 -26.12 13.29 55.43 0.74 -25.38 16 25 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.66 5.89 -51.93 -0.31 1.36 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.38 5.87 -51.93 -0.30 1.08 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 6.66 7.93 -40.82 -0.32 6.34 16 39 H 0.10 1.80 6.33 -51.93 -0.33 1.47 16 40 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.94 5.67 -51.93 -0.29 0.64 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.38 6.95 5.83 -40.82 -0.24 6.71 16 50 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -33.10 400.90 -9.38 -42.48 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.94 Total: 13.08 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: -0.54 Total: 16.51 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.34 Total: -61.89 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.58 Total: -32.04 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.10 -9.38 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.384 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds