Wall clock time and date at job start Wed Apr 1 2020 00:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.53003 * 109.46971 * 239.99875 * 2 1 3 5 5 O 1.45201 * 109.47061 * 120.00072 * 2 1 3 6 6 C 1.34633 * 117.00213 * 59.99777 * 5 2 1 7 7 O 1.21512 * 120.00198 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00182 * 179.97438 * 6 5 2 9 9 C 1.47604 * 118.64344 * 0.02562 * 8 6 5 10 10 C 1.53944 * 112.14090 * 137.86754 * 9 8 6 11 11 C 1.50883 * 110.09407 * 319.42929 * 10 9 8 12 12 C 1.52563 * 109.35688 * 91.89364 * 11 10 9 13 13 H 1.09002 * 108.38784 * 36.14776 * 12 11 10 14 14 N 1.46500 * 108.51469 * 153.72934 * 12 11 10 15 15 C 1.34783 * 119.99911 * 209.77126 * 14 12 11 16 16 O 1.21590 * 120.00103 * 359.97438 * 15 14 12 17 17 N 1.34770 * 119.99962 * 180.02562 * 15 14 12 18 18 C 1.46493 * 120.00179 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.47572 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00346 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99904 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47281 * 89.99800 * 23 21 19 25 25 H 1.48495 * 109.47179 * 209.99825 * 23 21 19 26 26 H 1.48501 * 109.46869 * 330.00158 * 23 21 19 27 27 C 1.47094 * 114.32981 * 274.98593 * 12 11 10 28 28 C 1.44662 * 118.81112 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.46966 * 300.00217 * 1 2 3 30 30 H 1.09003 * 109.46963 * 59.99783 * 1 2 3 31 31 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46871 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46793 * 300.00003 * 3 2 1 34 34 H 1.09000 * 109.46813 * 59.99954 * 3 2 1 35 35 H 1.08992 * 109.47062 * 299.99797 * 4 2 1 36 36 H 1.08995 * 109.47179 * 60.00622 * 4 2 1 37 37 H 1.09004 * 109.46665 * 180.02562 * 4 2 1 38 38 H 1.08993 * 108.94742 * 17.17683 * 9 8 6 39 39 H 1.08997 * 108.86921 * 258.50000 * 9 8 6 40 40 H 1.08998 * 109.36287 * 199.24458 * 10 9 8 41 41 H 1.08997 * 109.37202 * 79.62305 * 10 9 8 42 42 H 1.09006 * 109.49307 * 331.92711 * 11 10 9 43 43 H 1.09004 * 109.49121 * 211.86005 * 11 10 9 44 44 H 0.96997 * 119.99733 * 29.76824 * 14 12 11 45 45 H 0.97002 * 120.00067 * 359.97438 * 17 15 14 46 46 H 1.09002 * 109.47500 * 299.99616 * 18 17 15 47 47 H 1.09007 * 109.47538 * 59.99658 * 18 17 15 48 48 H 0.96997 * 119.99546 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.33138 * 183.05822 * 27 12 11 50 50 H 1.08996 * 109.32977 * 302.71021 * 27 12 11 51 51 H 1.08999 * 109.61590 * 150.83317 * 28 8 6 52 52 H 1.08997 * 109.32726 * 30.89035 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 2.9185 -1.9836 3.4117 10 6 2.5107 -2.3265 4.8560 11 6 1.0071 -2.3610 4.9758 12 6 0.5128 -3.7835 4.7313 13 1 1.2388 -4.4774 5.1550 14 7 -0.7613 -3.9602 5.4325 15 6 -1.1139 -5.1768 5.8931 16 8 -0.3748 -6.1277 5.7264 17 7 -2.2863 -5.3395 6.5377 18 6 -2.6698 -6.6619 7.0379 19 6 -4.0135 -6.5729 7.7146 20 1 -4.5302 -5.6259 7.7664 21 6 -4.5835 -7.7004 8.2665 22 7 -3.9544 -8.8536 8.2029 23 14 -6.2493 -7.5901 9.1046 24 1 -7.3221 -7.8381 8.1082 25 1 -6.3296 -8.6086 10.1822 26 1 -6.4204 -6.2359 9.6895 27 6 0.3163 -4.1214 3.3133 28 6 1.6645 -4.0480 2.5548 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.8376 -0.9063 3.2674 39 1 3.9544 -2.2846 3.2555 40 1 2.9100 -1.5715 5.5332 41 1 2.9172 -3.3015 5.1246 42 1 0.5678 -1.6912 4.2364 43 1 0.7145 -2.0411 5.9760 44 1 -1.3511 -3.2017 5.5652 45 1 -2.8761 -4.5810 6.6704 46 1 -2.7279 -7.3627 6.2050 47 1 -1.9251 -7.0096 7.7540 48 1 -4.3557 -9.6469 8.5909 49 1 -0.0870 -5.1311 3.2355 50 1 -0.3866 -3.4170 2.8686 51 1 2.4242 -4.5972 3.1110 52 1 1.5488 -4.4906 1.5654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787356351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:51 Heat of formation + Delta-G solvation = -117.415557 kcal Electronic energy + Delta-G solvation = -31072.107879 eV Core-core repulsion = 26878.628189 eV Total energy + Delta-G solvation = -4193.479690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.22743 -39.78831 -38.50688 -36.87231 -35.22073 -34.18087 -33.94928 -32.90626 -32.38166 -31.15251 -27.73512 -27.66212 -27.42687 -26.62159 -25.30003 -23.22890 -22.39076 -21.18391 -20.65195 -20.11193 -19.29716 -18.10921 -18.01418 -16.94875 -16.51904 -16.25757 -15.96533 -15.64130 -14.99995 -14.87360 -14.81727 -14.55245 -14.32717 -14.16893 -13.82032 -13.62433 -13.53234 -13.09618 -12.85450 -12.74126 -12.62635 -12.39254 -12.25643 -12.20070 -11.94212 -11.88690 -11.70526 -11.65598 -11.52873 -11.48648 -11.18347 -10.96860 -10.93256 -10.84437 -10.66607 -10.60969 -10.27695 -10.14133 -9.36949 -9.34167 -9.00953 -8.72281 -8.61743 -7.72287 -6.13114 -4.19460 1.95765 2.65279 3.26255 3.30798 3.33653 3.40812 3.53419 3.99877 4.34681 4.38192 4.40382 4.44817 4.59236 4.62484 4.77647 4.86244 4.99938 5.02864 5.14090 5.22146 5.22861 5.24470 5.26196 5.34038 5.36833 5.40823 5.45208 5.50084 5.55616 5.58436 5.64739 5.68844 5.70165 5.95660 5.96908 6.00081 6.04577 6.10294 6.23708 6.35542 6.44575 6.95617 7.11810 7.16709 7.55535 7.58771 7.60379 7.94618 8.07984 8.16471 8.79685 8.98801 9.37287 9.51744 10.97127 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002039 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.158424 B =13731.464514 C =14182.551994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.647 3.353 7 O -0.565 6.565 8 N -0.586 5.586 9 C 0.112 3.888 10 C -0.130 4.130 11 C -0.123 4.123 12 C 0.167 3.833 13 H 0.083 0.917 14 N -0.758 5.758 15 C 0.693 3.307 16 O -0.602 6.602 17 N -0.731 5.731 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.145 4.145 28 C 0.134 3.866 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.389 0.611 45 H 0.386 0.614 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.265 0.735 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.086 0.914 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.453 22.422 -14.769 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.454 6.454 8 N -0.326 5.326 9 C -0.010 4.010 10 C -0.169 4.169 11 C -0.161 4.161 12 C 0.061 3.939 13 H 0.101 0.899 14 N -0.414 5.414 15 C 0.392 3.608 16 O -0.481 6.481 17 N -0.383 5.383 18 C 0.146 3.854 19 C -0.580 4.580 20 H 0.080 0.920 21 C -0.141 4.141 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.184 4.184 28 C 0.011 3.989 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.222 0.778 45 H 0.218 0.782 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.105 0.895 50 H 0.084 0.916 51 H 0.104 0.896 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.894 21.159 -15.121 30.479 hybrid contribution -1.572 0.678 0.597 1.813 sum 14.322 21.836 -14.524 29.881 Atomic orbital electron populations 1.22512 0.93950 1.05187 1.02410 1.22051 0.94405 0.91458 0.82232 1.21852 1.02132 0.92628 1.03100 1.22508 1.01408 1.03604 0.96478 1.86288 1.71589 1.23801 1.46225 1.18117 0.78860 0.80541 0.82340 1.90908 1.40888 1.70184 1.43412 1.46737 1.53015 1.11951 1.20931 1.21998 0.93415 0.97791 0.87840 1.21714 0.96264 1.03430 0.95470 1.21373 0.95701 0.96558 1.02514 1.19699 0.86059 0.96312 0.91785 0.89914 1.45442 1.22707 1.09886 1.63388 1.16180 0.82786 0.82853 0.78932 1.90857 1.53455 1.39433 1.64382 1.45726 1.18656 1.14330 1.59544 1.18960 0.94802 0.77485 0.94139 1.21234 1.03501 0.95433 1.37793 0.92002 1.24949 0.98104 0.95066 0.95973 1.69983 1.38308 0.99476 1.44519 0.86413 0.83452 0.77895 0.79116 1.20493 1.21027 1.19811 1.21657 0.97512 1.03791 0.95485 1.21452 0.96246 0.79145 1.02043 0.92208 0.91241 0.89286 0.91552 0.90218 0.91498 0.89329 0.91241 0.92295 0.89361 0.91547 0.89957 0.90718 0.91467 0.90722 0.77804 0.78249 0.95797 0.95800 0.92496 0.89481 0.91563 0.89586 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.14 1.14 1.13 -90.62 -0.10 1.04 16 3 C -0.14 -0.81 8.85 37.16 0.33 -0.48 16 4 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 5 O -0.36 -3.66 8.39 -40.30 -0.34 -4.00 16 6 C 0.65 7.49 7.64 54.06 0.41 7.90 16 7 O -0.56 -7.87 11.33 -19.28 -0.22 -8.08 16 8 N -0.59 -5.84 2.24 -178.27 -0.40 -6.24 16 9 C 0.11 0.83 6.11 -2.95 -0.02 0.81 16 10 C -0.13 -0.95 5.70 -27.30 -0.16 -1.10 16 11 C -0.12 -1.15 5.00 -28.02 -0.14 -1.29 16 12 C 0.17 2.12 1.95 -70.99 -0.14 1.98 16 13 H 0.08 1.21 6.64 -51.93 -0.34 0.87 16 14 N -0.76 -11.32 4.89 -61.71 -0.30 -11.62 16 15 C 0.69 14.31 8.41 -86.92 -0.73 13.58 16 16 O -0.60 -14.88 15.85 5.29 0.08 -14.79 16 17 N -0.73 -15.86 5.55 -66.41 -0.37 -16.23 16 18 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 19 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 20 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 C -0.14 -1.87 5.20 -28.58 -0.15 -2.02 16 28 C 0.13 1.45 5.38 -4.04 -0.02 1.43 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.62 6.87 -51.93 -0.36 0.27 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 42 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 43 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 44 H 0.39 4.79 8.63 -40.82 -0.35 4.44 16 45 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.09 1.37 7.95 -51.93 -0.41 0.95 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 52 H 0.09 1.05 7.31 -51.93 -0.38 0.67 16 LS Contribution 406.68 15.07 6.13 6.13 Total: -1.00 -34.26 406.68 -9.24 -43.51 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -9.01 Total: 7.92 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.54 Total: 12.98 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.33 Total: -59.73 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.47 Total: -26.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.26 -9.24 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.909 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds