Wall clock time and date at job start Wed Apr 1 2020 00:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.53003 * 109.46971 * 239.99875 * 2 1 3 5 5 O 1.45201 * 109.47061 * 120.00072 * 2 1 3 6 6 C 1.34633 * 117.00213 * 59.99777 * 5 2 1 7 7 O 1.21512 * 120.00198 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00182 * 179.97438 * 6 5 2 9 9 C 1.47604 * 118.64344 * 0.02562 * 8 6 5 10 10 C 1.53944 * 112.14090 * 137.86754 * 9 8 6 11 11 C 1.50883 * 110.09407 * 319.42929 * 10 9 8 12 12 C 1.52563 * 109.35688 * 91.89364 * 11 10 9 13 13 H 1.09002 * 108.38784 * 36.14776 * 12 11 10 14 14 N 1.46500 * 108.51469 * 153.72934 * 12 11 10 15 15 C 1.34783 * 119.99911 * 209.77126 * 14 12 11 16 16 O 1.21590 * 120.00103 * 359.97438 * 15 14 12 17 17 N 1.34770 * 119.99962 * 180.02562 * 15 14 12 18 18 C 1.46493 * 120.00179 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.47572 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00346 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99904 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47281 * 89.99800 * 23 21 19 25 25 H 1.48495 * 109.47179 * 209.99825 * 23 21 19 26 26 H 1.48501 * 109.46869 * 330.00158 * 23 21 19 27 27 C 1.47094 * 114.32981 * 274.98593 * 12 11 10 28 28 C 1.44662 * 118.81112 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.46966 * 300.00217 * 1 2 3 30 30 H 1.09003 * 109.46963 * 59.99783 * 1 2 3 31 31 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46871 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46793 * 300.00003 * 3 2 1 34 34 H 1.09000 * 109.46813 * 59.99954 * 3 2 1 35 35 H 1.08992 * 109.47062 * 299.99797 * 4 2 1 36 36 H 1.08995 * 109.47179 * 60.00622 * 4 2 1 37 37 H 1.09004 * 109.46665 * 180.02562 * 4 2 1 38 38 H 1.08993 * 108.94742 * 17.17683 * 9 8 6 39 39 H 1.08997 * 108.86921 * 258.50000 * 9 8 6 40 40 H 1.08998 * 109.36287 * 199.24458 * 10 9 8 41 41 H 1.08997 * 109.37202 * 79.62305 * 10 9 8 42 42 H 1.09006 * 109.49307 * 331.92711 * 11 10 9 43 43 H 1.09004 * 109.49121 * 211.86005 * 11 10 9 44 44 H 0.96997 * 119.99733 * 29.76824 * 14 12 11 45 45 H 0.97002 * 120.00067 * 359.97438 * 17 15 14 46 46 H 1.09002 * 109.47500 * 299.99616 * 18 17 15 47 47 H 1.09007 * 109.47538 * 59.99658 * 18 17 15 48 48 H 0.96997 * 119.99546 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.33138 * 183.05822 * 27 12 11 50 50 H 1.08996 * 109.32977 * 302.71021 * 27 12 11 51 51 H 1.08999 * 109.61590 * 150.83317 * 28 8 6 52 52 H 1.08997 * 109.32726 * 30.89035 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 2.9185 -1.9836 3.4117 10 6 2.5107 -2.3265 4.8560 11 6 1.0071 -2.3610 4.9758 12 6 0.5128 -3.7835 4.7313 13 1 1.2388 -4.4774 5.1550 14 7 -0.7613 -3.9602 5.4325 15 6 -1.1139 -5.1768 5.8931 16 8 -0.3748 -6.1277 5.7264 17 7 -2.2863 -5.3395 6.5377 18 6 -2.6698 -6.6619 7.0379 19 6 -4.0135 -6.5729 7.7146 20 1 -4.5302 -5.6259 7.7664 21 6 -4.5835 -7.7004 8.2665 22 7 -3.9544 -8.8536 8.2029 23 14 -6.2493 -7.5901 9.1046 24 1 -7.3221 -7.8381 8.1082 25 1 -6.3296 -8.6086 10.1822 26 1 -6.4204 -6.2359 9.6895 27 6 0.3163 -4.1214 3.3133 28 6 1.6645 -4.0480 2.5548 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.8376 -0.9063 3.2674 39 1 3.9544 -2.2846 3.2555 40 1 2.9100 -1.5715 5.5332 41 1 2.9172 -3.3015 5.1246 42 1 0.5678 -1.6912 4.2364 43 1 0.7145 -2.0411 5.9760 44 1 -1.3511 -3.2017 5.5652 45 1 -2.8761 -4.5810 6.6704 46 1 -2.7279 -7.3627 6.2050 47 1 -1.9251 -7.0096 7.7540 48 1 -4.3557 -9.6469 8.5909 49 1 -0.0870 -5.1311 3.2355 50 1 -0.3866 -3.4170 2.8686 51 1 2.4242 -4.5972 3.1110 52 1 1.5488 -4.4906 1.5654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:50 Heat of formation + Delta-G solvation = -141.052389 kcal Electronic energy + Delta-G solvation = -31073.132849 eV Core-core repulsion = 26878.628189 eV Total energy + Delta-G solvation = -4194.504660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08357 -41.14188 -39.63186 -37.82589 -36.42704 -35.89892 -34.89775 -34.37670 -33.71453 -32.46130 -29.22670 -28.33736 -28.25592 -27.70061 -26.30506 -24.73940 -23.76537 -22.02923 -21.70550 -21.67832 -20.10893 -19.72552 -18.92449 -18.05315 -17.75512 -17.50389 -17.32145 -16.68316 -16.48143 -16.31894 -15.73173 -15.65090 -15.46746 -15.24218 -14.92486 -14.67434 -14.57993 -14.45007 -14.02813 -13.92102 -13.67415 -13.50373 -13.30185 -13.04320 -12.93824 -12.89842 -12.82083 -12.72113 -12.52652 -12.45303 -12.37342 -12.22760 -12.21946 -11.96008 -11.80402 -11.66469 -11.46929 -11.34801 -11.16791 -10.99563 -10.80067 -10.27868 -9.80282 -9.54079 -8.28310 -6.44709 1.17628 1.42907 1.45855 1.56779 1.76344 1.91827 2.28362 2.39549 2.81661 3.06422 3.51237 3.56533 3.78574 3.83538 3.87155 3.96285 3.98984 4.07205 4.18191 4.28881 4.37679 4.49836 4.59982 4.63967 4.66318 4.69857 4.76360 4.79605 4.86621 4.91905 4.94950 4.96836 5.01695 5.12998 5.14791 5.16334 5.22793 5.27731 5.31051 5.32229 5.37449 5.49125 5.49965 5.60278 5.63006 5.70794 5.86056 6.28364 6.29986 6.67169 7.24689 7.31259 7.33409 7.75470 8.83993 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002039 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.158424 B =13731.464514 C =14182.551994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.361 6.361 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.583 5.583 9 C 0.110 3.890 10 C -0.126 4.126 11 C -0.112 4.112 12 C 0.167 3.833 13 H 0.066 0.934 14 N -0.735 5.735 15 C 0.691 3.309 16 O -0.646 6.646 17 N -0.726 5.726 18 C 0.287 3.713 19 C -0.555 4.555 20 H 0.083 0.917 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.987 3.013 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.256 1.256 27 C -0.135 4.135 28 C 0.142 3.858 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.407 0.593 45 H 0.403 0.597 46 H -0.017 1.017 47 H -0.014 1.014 48 H 0.269 0.731 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.102 0.898 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.519 25.927 -14.312 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.275 6.275 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.323 5.323 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.151 4.151 12 C 0.062 3.938 13 H 0.084 0.916 14 N -0.391 5.391 15 C 0.391 3.609 16 O -0.529 6.529 17 N -0.380 5.380 18 C 0.163 3.837 19 C -0.593 4.593 20 H 0.101 0.899 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.809 3.191 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.179 1.179 27 C -0.175 4.175 28 C 0.019 3.981 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.242 0.758 45 H 0.238 0.762 46 H 0.001 0.999 47 H 0.004 0.996 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.120 0.880 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.981 24.774 -14.677 32.933 hybrid contribution -1.526 -0.388 0.367 1.616 sum 14.456 24.386 -14.310 31.756 Atomic orbital electron populations 1.22465 0.94444 1.03378 1.03427 1.22370 0.94222 0.92845 0.81670 1.21862 1.02518 0.90441 1.04247 1.22460 1.01662 1.02068 0.97437 1.86298 1.71423 1.22795 1.46998 1.18309 0.78586 0.81020 0.82343 1.90907 1.42199 1.70894 1.44581 1.46788 1.52903 1.11422 1.21196 1.22206 0.93725 0.98072 0.87061 1.21722 0.94464 1.04270 0.95939 1.21309 0.97239 0.93414 1.03097 1.19952 0.84365 0.98582 0.90876 0.91585 1.45297 1.23650 1.08296 1.61869 1.16342 0.81984 0.83938 0.78635 1.90826 1.54640 1.41522 1.65865 1.45330 1.19611 1.13098 1.59924 1.18380 0.94353 0.79157 0.91790 1.21601 1.03488 0.96506 1.37692 0.89943 1.26079 1.02690 0.94434 0.96506 1.70147 1.40604 1.00528 1.45580 0.85133 0.77510 0.78627 0.77779 1.19708 1.20846 1.17925 1.21505 0.98588 1.01379 0.96069 1.21266 0.95434 0.80199 1.01195 0.91982 0.89430 0.92407 0.90929 0.88340 0.91090 0.92299 0.89424 0.91767 0.88391 0.89781 0.87146 0.91084 0.91240 0.89695 0.75761 0.76184 0.99901 0.99580 0.92245 0.92981 0.92341 0.88016 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 2 C 0.13 1.93 1.13 -10.79 -0.01 1.92 16 3 C -0.13 -1.17 8.85 71.98 0.64 -0.53 16 4 C -0.18 -2.84 8.37 71.98 0.60 -2.24 16 5 O -0.36 -6.74 8.39 -55.42 -0.47 -7.21 16 6 C 0.64 14.64 7.64 129.79 0.99 15.63 16 7 O -0.59 -17.15 11.33 19.80 0.22 -16.93 16 8 N -0.58 -11.08 2.24 -948.35 -2.12 -13.21 16 9 C 0.11 1.34 6.11 86.49 0.53 1.87 16 10 C -0.13 -1.47 5.70 30.22 0.17 -1.30 16 11 C -0.11 -1.85 5.00 29.76 0.15 -1.70 16 12 C 0.17 4.19 1.95 43.01 0.08 4.28 16 13 H 0.07 1.95 6.64 -2.39 -0.02 1.93 16 14 N -0.73 -21.79 4.89 -467.42 -2.28 -24.08 16 15 C 0.69 29.35 8.41 179.05 1.51 30.86 16 16 O -0.65 -33.53 15.85 -4.00 -0.06 -33.59 16 17 N -0.73 -32.20 5.55 -482.29 -2.68 -34.87 16 18 C 0.29 16.24 5.43 85.64 0.46 16.71 16 19 C -0.55 -30.82 9.28 25.60 0.24 -30.59 16 20 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 23 Si 0.99 42.90 29.54 68.60 2.03 44.93 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 27 C -0.14 -3.63 5.20 29.39 0.15 -3.48 16 28 C 0.14 3.13 5.38 87.36 0.47 3.60 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.06 6.87 -2.39 -0.02 1.05 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.94 7.31 -2.39 -0.02 0.92 16 42 H 0.07 1.16 7.48 -2.38 -0.02 1.14 16 43 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 44 H 0.41 9.43 8.63 -92.71 -0.80 8.63 16 45 H 0.40 14.83 8.34 -92.71 -0.77 14.06 16 46 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 47 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 48 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.05 1.76 7.95 -2.39 -0.02 1.74 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.10 1.92 8.05 -2.39 -0.02 1.90 16 52 H 0.08 1.91 7.31 -2.39 -0.02 1.89 16 Total: -1.00 -78.92 406.68 1.32 -77.60 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.65 Total: 30.74 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 7.05 Total: 33.24 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -6.80 Total: -128.76 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.30 Total: -57.73 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -78.92 1.32 -77.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.457 kcal (2) G-P(sol) polarization free energy of solvation -78.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds