Wall clock time and date at job start Wed Apr 1 2020 00:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46542 * 2 1 4 4 C 1.52997 * 109.46964 * 240.00423 * 2 1 3 5 5 O 1.45192 * 109.47304 * 120.00087 * 2 1 3 6 6 C 1.34631 * 117.00317 * 60.00121 * 5 2 1 7 7 O 1.21515 * 120.00208 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00648 * 180.02562 * 6 5 2 9 9 C 1.46957 * 120.64915 * 359.81944 * 8 6 5 10 10 C 1.53197 * 108.89063 * 233.53185 * 9 8 6 11 11 C 1.53040 * 109.31110 * 305.44560 * 10 9 8 12 12 C 1.53044 * 109.53662 * 61.36306 * 11 10 9 13 13 H 1.08997 * 109.49691 * 58.58900 * 12 11 10 14 14 C 1.53008 * 109.52383 * 178.66719 * 12 11 10 15 15 N 1.46490 * 109.46919 * 184.85490 * 14 12 11 16 16 C 1.34783 * 119.99835 * 179.97438 * 15 14 12 17 17 O 1.21590 * 119.99933 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00099 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00003 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47253 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99747 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00456 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46977 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47041 * 120.00017 * 24 22 20 27 27 H 1.48504 * 109.47470 * 240.00005 * 24 22 20 28 28 C 1.46926 * 120.63278 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.46690 * 299.99453 * 1 2 3 30 30 H 1.09000 * 109.47074 * 60.00043 * 1 2 3 31 31 H 1.08999 * 109.46453 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47401 * 299.99757 * 3 2 1 34 34 H 1.09000 * 109.47529 * 60.00500 * 3 2 1 35 35 H 1.09004 * 109.47358 * 299.99446 * 4 2 1 36 36 H 1.09000 * 109.47605 * 59.99860 * 4 2 1 37 37 H 1.09005 * 109.47153 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.46843 * 113.75181 * 9 8 6 39 39 H 1.08997 * 109.71602 * 353.46674 * 9 8 6 40 40 H 1.08995 * 109.50005 * 185.49506 * 10 9 8 41 41 H 1.08996 * 109.49270 * 65.39471 * 10 9 8 42 42 H 1.08994 * 109.45892 * 301.34445 * 11 10 9 43 43 H 1.09001 * 109.45142 * 181.37673 * 11 10 9 44 44 H 1.09003 * 109.46951 * 304.85474 * 14 12 11 45 45 H 1.08997 * 109.47107 * 64.85309 * 14 12 11 46 46 H 0.96996 * 120.00636 * 0.02562 * 15 14 12 47 47 H 0.96996 * 120.00371 * 0.02562 * 18 16 15 48 48 H 1.08997 * 109.47382 * 300.00237 * 19 18 16 49 49 H 1.09002 * 109.46970 * 60.00279 * 19 18 16 50 50 H 0.96998 * 119.99928 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.58861 * 6.60537 * 28 8 6 52 52 H 1.08996 * 109.58519 * 246.32428 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9722 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0674 -2.6654 2.4171 9 6 2.9183 -2.0309 3.4334 10 6 4.1684 -2.8916 3.6414 11 6 3.7466 -4.3234 3.9794 12 6 2.9449 -4.9093 2.8148 13 1 3.5525 -4.8925 1.9101 14 6 2.5518 -6.3519 3.1393 15 7 1.8859 -6.9492 1.9792 16 6 1.4494 -8.2232 2.0346 17 8 1.6080 -8.8766 3.0477 18 7 0.8363 -8.7725 0.9675 19 6 0.3615 -10.1571 1.0280 20 6 -0.2813 -10.5256 -0.2844 21 1 -0.3314 -9.8007 -1.0834 22 6 -0.8062 -11.7876 -0.4645 23 7 -0.7456 -12.6702 0.5086 24 14 -1.6035 -12.2441 -2.0910 25 1 -1.5437 -11.0829 -3.0147 26 1 -0.8788 -13.3923 -2.6925 27 1 -3.0213 -12.6203 -1.8590 28 6 1.6814 -4.0716 2.5974 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 2.3680 -1.9535 4.3711 39 1 3.2113 -1.0359 3.0986 40 1 4.7591 -2.4832 4.4613 41 1 4.7644 -2.8938 2.7288 42 1 3.1300 -4.3176 4.8782 43 1 4.6342 -4.9322 4.1519 44 1 3.4459 -6.9266 3.3807 45 1 1.8730 -6.3605 3.9921 46 1 1.7596 -6.4281 1.1708 47 1 0.7094 -8.2512 0.1594 48 1 1.2037 -10.8221 1.2190 49 1 -0.3689 -10.2559 1.8311 50 1 -1.1146 -13.5583 0.3817 51 1 1.1582 -4.4238 1.7083 52 1 1.0288 -4.1629 3.4656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787360124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:38 Heat of formation + Delta-G solvation = -126.950168 kcal Electronic energy + Delta-G solvation = -30582.961098 eV Core-core repulsion = 26389.067956 eV Total energy + Delta-G solvation = -4193.893142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.18470 -39.54821 -38.72604 -36.91483 -35.23555 -34.27130 -33.94040 -32.87127 -32.25569 -31.21978 -27.75242 -27.67359 -27.41718 -26.13241 -25.65462 -22.87691 -22.44203 -21.92486 -20.58190 -19.98907 -19.48103 -18.28384 -17.84919 -16.95718 -16.45445 -16.08779 -15.76893 -15.61575 -15.43115 -14.78004 -14.76570 -14.61417 -14.55454 -14.07673 -13.88233 -13.68492 -13.54660 -13.38148 -12.97668 -12.90089 -12.84958 -12.49919 -12.29943 -12.21979 -12.09295 -11.91763 -11.76786 -11.70722 -11.58951 -11.44620 -11.19157 -11.02507 -10.89741 -10.86545 -10.85138 -10.65599 -10.25978 -10.21251 -9.36709 -9.30110 -9.03236 -8.73827 -8.63134 -7.69851 -6.11069 -4.17088 1.84050 2.59681 3.27499 3.33225 3.36476 3.43765 3.48740 4.01137 4.34950 4.37413 4.38832 4.42047 4.46017 4.51271 4.57363 4.61436 4.86602 4.99851 5.10483 5.12557 5.17081 5.20771 5.24489 5.25093 5.32061 5.36041 5.42042 5.43803 5.45993 5.49199 5.54388 5.63629 5.65016 5.72978 5.82852 5.91382 5.99314 5.99818 6.07666 6.17847 6.20520 6.89781 7.08305 7.17089 7.57746 7.60790 7.62493 7.95687 8.08995 8.09543 8.82210 9.00033 9.38868 9.53525 10.99254 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002295 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.296915 B =12198.293365 C =14225.053868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.564 6.564 8 N -0.595 5.595 9 C 0.110 3.890 10 C -0.134 4.134 11 C -0.114 4.114 12 C -0.114 4.114 13 H 0.082 0.918 14 C 0.150 3.850 15 N -0.760 5.760 16 C 0.693 3.307 17 O -0.602 6.602 18 N -0.730 5.730 19 C 0.267 3.733 20 C -0.540 4.540 21 H 0.063 0.937 22 C 0.062 3.938 23 N -0.886 5.886 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.131 3.869 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.392 0.608 47 H 0.387 0.613 48 H 0.024 0.976 49 H 0.024 0.976 50 H 0.265 0.735 51 H 0.099 0.901 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 31.232 3.293 32.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.012 4.012 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.133 4.133 13 H 0.101 0.899 14 C 0.025 3.975 15 N -0.418 5.418 16 C 0.393 3.607 17 O -0.482 6.482 18 N -0.382 5.382 19 C 0.145 3.855 20 C -0.578 4.578 21 H 0.081 0.919 22 C -0.141 4.141 23 N -0.524 5.524 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.009 3.991 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.225 0.775 47 H 0.219 0.781 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.117 0.883 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.392 30.289 3.968 31.959 hybrid contribution -0.554 0.159 -1.624 1.723 sum 8.838 30.448 2.345 31.791 Atomic orbital electron populations 1.22519 0.93929 1.05229 1.02422 1.22073 0.94423 0.91443 0.82160 1.21857 1.02172 0.92576 1.03104 1.22518 1.01473 1.03673 0.96428 1.86269 1.71544 1.23679 1.46415 1.17979 0.78888 0.80601 0.81840 1.90923 1.41145 1.70303 1.42942 1.46967 1.52907 1.12149 1.21501 1.21747 0.91082 0.96905 0.91483 1.21918 0.97149 0.95586 1.02535 1.21513 1.00374 0.95634 0.97642 1.21797 0.96995 0.94294 1.00254 0.89936 1.21016 0.97509 0.90388 0.88636 1.45199 1.65687 1.13439 1.17445 1.16138 0.79042 0.80930 0.84607 1.90868 1.63650 1.61983 1.31669 1.45721 1.61109 1.17235 1.14107 1.18975 0.94508 0.74738 0.97232 1.21279 1.39077 0.98473 0.98981 0.91894 1.24948 0.95865 0.96085 0.97208 1.69993 1.45014 1.05450 1.31904 0.86363 0.78981 0.78486 0.83080 1.19649 1.20850 1.20829 1.21734 0.96289 0.77221 1.03825 0.92264 0.91123 0.89251 0.91529 0.90128 0.91540 0.89238 0.91127 0.92244 0.91137 0.89122 0.90241 0.91348 0.91041 0.90811 0.91397 0.91644 0.77489 0.78133 0.95772 0.95753 0.92573 0.88290 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 2 C 0.14 1.15 1.13 -90.62 -0.10 1.04 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.47 16 4 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 5 O -0.36 -3.63 8.53 -40.30 -0.34 -3.98 16 6 C 0.65 7.47 7.74 54.06 0.42 7.89 16 7 O -0.56 -7.83 11.29 -19.28 -0.22 -8.05 16 8 N -0.59 -5.65 2.98 -178.56 -0.53 -6.18 16 9 C 0.11 0.74 6.44 -3.69 -0.02 0.72 16 10 C -0.13 -0.77 6.08 -26.61 -0.16 -0.94 16 11 C -0.11 -0.77 5.17 -26.69 -0.14 -0.91 16 12 C -0.11 -1.02 2.38 -90.52 -0.22 -1.23 16 13 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 14 C 0.15 1.84 5.07 -4.04 -0.02 1.82 16 15 N -0.76 -11.45 5.33 -65.23 -0.35 -11.80 16 16 C 0.69 14.62 8.57 -86.92 -0.74 13.87 16 17 O -0.60 -15.28 16.34 5.29 0.09 -15.20 16 18 N -0.73 -16.16 5.55 -66.41 -0.37 -16.53 16 19 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 20 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 21 H 0.06 1.65 7.60 -52.49 -0.40 1.26 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 C 0.13 1.28 5.51 -3.73 -0.02 1.26 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 32 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.58 6.94 -51.93 -0.36 0.22 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.39 5.04 7.71 -40.82 -0.31 4.72 16 47 H 0.39 7.44 8.33 -40.82 -0.34 7.10 16 48 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.10 1.15 6.20 -51.93 -0.32 0.82 16 52 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 411.43 15.07 6.20 6.20 Total: -1.00 -35.00 411.43 -9.40 -44.40 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -9.09 Total: 6.59 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -0.50 Total: 14.10 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.51 Total: -60.36 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.48 Total: -27.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.00 -9.40 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.553 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds