Wall clock time and date at job start Wed Apr 1 2020 00:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46542 * 2 1 4 4 C 1.52997 * 109.46964 * 240.00423 * 2 1 3 5 5 O 1.45192 * 109.47304 * 120.00087 * 2 1 3 6 6 C 1.34631 * 117.00317 * 60.00121 * 5 2 1 7 7 O 1.21515 * 120.00208 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00648 * 180.02562 * 6 5 2 9 9 C 1.46957 * 120.64915 * 359.81944 * 8 6 5 10 10 C 1.53197 * 108.89063 * 233.53185 * 9 8 6 11 11 C 1.53040 * 109.31110 * 305.44560 * 10 9 8 12 12 C 1.53044 * 109.53662 * 61.36306 * 11 10 9 13 13 H 1.08997 * 109.49691 * 58.58900 * 12 11 10 14 14 C 1.53008 * 109.52383 * 178.66719 * 12 11 10 15 15 N 1.46490 * 109.46919 * 184.85490 * 14 12 11 16 16 C 1.34783 * 119.99835 * 179.97438 * 15 14 12 17 17 O 1.21590 * 119.99933 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00099 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00003 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47253 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99747 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00456 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46977 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47041 * 120.00017 * 24 22 20 27 27 H 1.48504 * 109.47470 * 240.00005 * 24 22 20 28 28 C 1.46926 * 120.63278 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.46690 * 299.99453 * 1 2 3 30 30 H 1.09000 * 109.47074 * 60.00043 * 1 2 3 31 31 H 1.08999 * 109.46453 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47401 * 299.99757 * 3 2 1 34 34 H 1.09000 * 109.47529 * 60.00500 * 3 2 1 35 35 H 1.09004 * 109.47358 * 299.99446 * 4 2 1 36 36 H 1.09000 * 109.47605 * 59.99860 * 4 2 1 37 37 H 1.09005 * 109.47153 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.46843 * 113.75181 * 9 8 6 39 39 H 1.08997 * 109.71602 * 353.46674 * 9 8 6 40 40 H 1.08995 * 109.50005 * 185.49506 * 10 9 8 41 41 H 1.08996 * 109.49270 * 65.39471 * 10 9 8 42 42 H 1.08994 * 109.45892 * 301.34445 * 11 10 9 43 43 H 1.09001 * 109.45142 * 181.37673 * 11 10 9 44 44 H 1.09003 * 109.46951 * 304.85474 * 14 12 11 45 45 H 1.08997 * 109.47107 * 64.85309 * 14 12 11 46 46 H 0.96996 * 120.00636 * 0.02562 * 15 14 12 47 47 H 0.96996 * 120.00371 * 0.02562 * 18 16 15 48 48 H 1.08997 * 109.47382 * 300.00237 * 19 18 16 49 49 H 1.09002 * 109.46970 * 60.00279 * 19 18 16 50 50 H 0.96998 * 119.99928 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.58861 * 6.60537 * 28 8 6 52 52 H 1.08996 * 109.58519 * 246.32428 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9722 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0674 -2.6654 2.4171 9 6 2.9183 -2.0309 3.4334 10 6 4.1684 -2.8916 3.6414 11 6 3.7466 -4.3234 3.9794 12 6 2.9449 -4.9093 2.8148 13 1 3.5525 -4.8925 1.9101 14 6 2.5518 -6.3519 3.1393 15 7 1.8859 -6.9492 1.9792 16 6 1.4494 -8.2232 2.0346 17 8 1.6080 -8.8766 3.0477 18 7 0.8363 -8.7725 0.9675 19 6 0.3615 -10.1571 1.0280 20 6 -0.2813 -10.5256 -0.2844 21 1 -0.3314 -9.8007 -1.0834 22 6 -0.8062 -11.7876 -0.4645 23 7 -0.7456 -12.6702 0.5086 24 14 -1.6035 -12.2441 -2.0910 25 1 -1.5437 -11.0829 -3.0147 26 1 -0.8788 -13.3923 -2.6925 27 1 -3.0213 -12.6203 -1.8590 28 6 1.6814 -4.0716 2.5974 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 2.3680 -1.9535 4.3711 39 1 3.2113 -1.0359 3.0986 40 1 4.7591 -2.4832 4.4613 41 1 4.7644 -2.8938 2.7288 42 1 3.1300 -4.3176 4.8782 43 1 4.6342 -4.9322 4.1519 44 1 3.4459 -6.9266 3.3807 45 1 1.8730 -6.3605 3.9921 46 1 1.7596 -6.4281 1.1708 47 1 0.7094 -8.2512 0.1594 48 1 1.2037 -10.8221 1.2190 49 1 -0.3689 -10.2559 1.8311 50 1 -1.1146 -13.5583 0.3817 51 1 1.1582 -4.4238 1.7083 52 1 1.0288 -4.1629 3.4656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787360124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:37 Heat of formation + Delta-G solvation = -151.582692 kcal Electronic energy + Delta-G solvation = -30584.029244 eV Core-core repulsion = 26389.067956 eV Total energy + Delta-G solvation = -4194.961288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97310 -40.94802 -39.76420 -37.75539 -36.47447 -35.92584 -35.01509 -34.36767 -33.58709 -32.19342 -29.32254 -28.35359 -28.27527 -27.16317 -26.56766 -24.61471 -23.22284 -22.96843 -21.84097 -21.21613 -20.21119 -19.73072 -18.91328 -18.00794 -17.70243 -17.37928 -17.22716 -16.75968 -16.46084 -16.21455 -15.93386 -15.47173 -15.37635 -15.30823 -15.01014 -14.66930 -14.45944 -14.34052 -14.19923 -14.07504 -14.01444 -13.58910 -13.36196 -13.09562 -12.97067 -12.88149 -12.84450 -12.80496 -12.73452 -12.48165 -12.29599 -12.22478 -12.12845 -11.86111 -11.72256 -11.57155 -11.44731 -11.37511 -11.20301 -11.02489 -10.81512 -10.26547 -9.77478 -9.57537 -8.28598 -6.44654 1.10229 1.42785 1.44282 1.57628 1.74894 1.91111 2.25689 2.39445 2.81957 3.06150 3.51688 3.65461 3.70196 3.76336 3.81374 3.82693 3.96619 4.06577 4.20384 4.30877 4.44730 4.54768 4.60848 4.62590 4.65620 4.73345 4.76009 4.77728 4.82958 4.85579 4.87315 4.90029 5.02660 5.10016 5.13343 5.14020 5.23124 5.27941 5.29493 5.33716 5.42845 5.44786 5.49443 5.51293 5.55258 5.67984 5.85700 6.24087 6.30729 6.67163 7.24235 7.27068 7.29546 7.72513 8.83947 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002295 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.296915 B =12198.293365 C =14225.053868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.362 6.362 6 C 0.645 3.355 7 O -0.595 6.595 8 N -0.593 5.593 9 C 0.106 3.894 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.096 4.096 13 H 0.081 0.919 14 C 0.148 3.852 15 N -0.736 5.736 16 C 0.692 3.308 17 O -0.647 6.647 18 N -0.726 5.726 19 C 0.286 3.714 20 C -0.554 4.554 21 H 0.081 0.919 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.986 3.014 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.278 1.278 28 C 0.131 3.869 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.406 0.594 47 H 0.403 0.597 48 H -0.013 1.013 49 H -0.014 1.014 50 H 0.269 0.731 51 H 0.078 0.922 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 33.906 2.324 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.277 6.277 6 C 0.400 3.600 7 O -0.487 6.487 8 N -0.333 5.333 9 C -0.015 4.015 10 C -0.163 4.163 11 C -0.150 4.150 12 C -0.116 4.116 13 H 0.099 0.901 14 C 0.023 3.977 15 N -0.393 5.393 16 C 0.391 3.609 17 O -0.530 6.530 18 N -0.379 5.379 19 C 0.162 3.838 20 C -0.592 4.592 21 H 0.099 0.901 22 C -0.196 4.196 23 N -0.568 5.568 24 Si 0.809 3.191 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.203 1.203 28 C 0.009 3.991 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.242 0.758 47 H 0.238 0.762 48 H 0.005 0.995 49 H 0.004 0.996 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.119 33.065 2.996 34.708 hybrid contribution -0.737 -0.603 -1.256 1.576 sum 9.382 32.462 1.740 33.835 Atomic orbital electron populations 1.22473 0.94309 1.03482 1.03492 1.22377 0.94334 0.92804 0.81534 1.21868 1.02490 0.90426 1.04298 1.22471 1.01622 1.02146 0.97500 1.86281 1.71420 1.22861 1.47137 1.18219 0.78753 0.81063 0.81969 1.90913 1.42545 1.71000 1.44194 1.47065 1.52847 1.11840 1.21518 1.21982 0.91210 0.97166 0.91165 1.21880 0.96707 0.94503 1.03226 1.21537 1.00355 0.96356 0.96706 1.21650 0.96804 0.91781 1.01370 0.90056 1.21235 0.96878 0.92176 0.87373 1.45033 1.64097 1.11218 1.18965 1.16298 0.78733 0.82327 0.83506 1.90834 1.65276 1.63659 1.33228 1.45345 1.61503 1.15737 1.15365 1.18408 0.92142 0.76840 0.96386 1.21623 1.39133 0.99256 0.99217 0.90117 1.26055 0.96215 0.95875 1.01455 1.70146 1.45987 1.06088 1.34595 0.85100 0.77644 0.78558 0.77826 1.17923 1.20282 1.20337 1.21654 0.96571 0.77821 1.03020 0.91884 0.89355 0.92306 0.91012 0.88266 0.91018 0.92242 0.89397 0.91875 0.89753 0.88572 0.87721 0.91925 0.90197 0.90097 0.91752 0.91973 0.75832 0.76242 0.99526 0.99578 0.92211 0.90389 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 2 C 0.13 1.98 1.13 -10.79 -0.01 1.97 16 3 C -0.13 -1.19 8.85 71.98 0.64 -0.56 16 4 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 5 O -0.36 -6.89 8.53 -55.41 -0.47 -7.36 16 6 C 0.64 14.64 7.74 129.79 1.00 15.65 16 7 O -0.60 -17.04 11.29 19.79 0.22 -16.81 16 8 N -0.59 -10.68 2.98 -949.25 -2.83 -13.51 16 9 C 0.11 1.18 6.44 86.36 0.56 1.74 16 10 C -0.13 -1.10 6.08 30.67 0.19 -0.91 16 11 C -0.11 -1.26 5.17 30.62 0.16 -1.10 16 12 C -0.10 -1.61 2.38 -10.73 -0.03 -1.63 16 13 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 14 C 0.15 3.56 5.07 86.38 0.44 4.00 16 15 N -0.74 -22.19 5.33 -478.53 -2.55 -24.74 16 16 C 0.69 29.89 8.57 179.05 1.53 31.42 16 17 O -0.65 -34.07 16.34 -4.00 -0.07 -34.13 16 18 N -0.73 -32.95 5.55 -482.29 -2.68 -35.63 16 19 C 0.29 16.36 5.43 85.63 0.46 16.83 16 20 C -0.55 -31.25 9.28 25.60 0.24 -31.01 16 21 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 22 C 0.00 0.20 5.46 84.65 0.46 0.66 16 23 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 24 Si 0.99 43.52 29.54 68.60 2.03 45.55 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.13 2.48 5.51 86.35 0.48 2.96 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.57 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.01 6.94 -2.39 -0.02 0.99 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.41 10.28 7.71 -92.71 -0.71 9.56 16 47 H 0.40 15.50 8.33 -92.71 -0.77 14.73 16 48 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 49 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 50 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.08 1.82 6.20 -2.39 -0.01 1.81 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -79.38 411.43 0.69 -78.69 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.57 Total: 29.59 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 7.32 Total: 35.22 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -7.77 Total: -130.74 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -0.31 Total: -58.31 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.38 0.69 -78.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.893 kcal (2) G-P(sol) polarization free energy of solvation -79.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds