Wall clock time and date at job start Wed Apr 1 2020 00:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47124 * 240.00029 * 2 1 3 5 5 O 1.45195 * 109.47125 * 119.99927 * 2 1 3 6 6 C 1.34638 * 117.00234 * 59.99678 * 5 2 1 7 7 O 1.21506 * 119.99468 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00112 * 180.02562 * 6 5 2 9 9 C 1.47076 * 120.87924 * 180.02562 * 8 6 5 10 10 C 1.53244 * 108.51741 * 231.16043 * 9 8 6 11 11 N 1.46898 * 109.34026 * 306.17179 * 10 9 8 12 12 C 1.46896 * 110.99994 * 187.25468 * 11 10 9 13 13 C 1.52996 * 109.47255 * 169.99594 * 12 11 10 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00446 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46973 * 90.00368 * 22 20 18 24 24 H 1.48497 * 109.46950 * 210.00151 * 22 20 18 25 25 H 1.48504 * 109.47027 * 330.00190 * 22 20 18 26 26 C 1.46900 * 111.27081 * 63.10162 * 11 10 9 27 27 C 1.47080 * 120.87955 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47297 * 300.00466 * 1 2 3 29 29 H 1.09000 * 109.47101 * 60.00280 * 1 2 3 30 30 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46799 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46986 * 299.99791 * 3 2 1 33 33 H 1.08994 * 109.47184 * 59.99940 * 3 2 1 34 34 H 1.09000 * 109.46721 * 299.99877 * 4 2 1 35 35 H 1.09000 * 109.47384 * 59.99864 * 4 2 1 36 36 H 1.09004 * 109.47176 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.63360 * 111.45189 * 9 8 6 38 38 H 1.08994 * 109.78840 * 350.96007 * 9 8 6 39 39 H 1.08995 * 109.49285 * 186.20861 * 10 9 8 40 40 H 1.09004 * 109.49321 * 66.12604 * 10 9 8 41 41 H 1.09004 * 109.47112 * 49.99587 * 12 11 10 42 42 H 1.09000 * 109.47386 * 289.99975 * 12 11 10 43 43 H 1.09004 * 109.47066 * 59.99965 * 13 12 11 44 44 H 1.08994 * 109.47405 * 299.99795 * 13 12 11 45 45 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 46 46 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 47 47 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 48 48 H 0.97000 * 119.99614 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.48879 * 56.85906 * 26 11 10 50 50 H 1.08999 * 109.49054 * 176.93161 * 26 11 10 51 51 H 1.09007 * 109.62450 * 248.54722 * 27 8 6 52 52 H 1.08999 * 109.63307 * 9.12769 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6840 -4.0731 2.6033 10 6 1.1015 -4.2369 4.0112 11 7 2.0589 -3.7182 4.9972 12 6 1.6155 -4.0118 6.3665 13 6 2.7422 -3.6849 7.3486 14 6 2.2870 -3.9855 8.7535 15 8 1.1715 -4.4190 8.9498 16 7 3.1218 -3.7783 9.7911 17 6 2.6815 -4.0762 11.1563 18 6 3.7929 -3.7588 12.1232 19 1 4.7332 -3.3733 11.7574 20 6 3.6091 -3.9596 13.4748 21 7 2.4640 -4.4286 13.9202 22 14 4.9867 -3.5654 14.6734 23 1 4.8662 -2.1540 15.1192 24 1 4.8916 -4.4660 15.8503 25 1 6.2973 -3.7628 14.0036 26 6 2.2848 -2.2782 4.8143 27 6 2.9162 -2.0342 3.4391 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 2.5623 -4.7092 2.4942 38 1 0.9351 -4.3526 1.8624 39 1 0.9141 -5.2927 4.2067 40 1 0.1666 -3.6813 4.0850 41 1 1.3587 -5.0681 6.4467 42 1 0.7404 -3.4063 6.6028 43 1 2.9989 -2.6285 7.2685 44 1 3.6171 -4.2904 7.1125 45 1 4.0141 -3.4318 9.6341 46 1 1.8075 -3.4708 11.3964 47 1 2.4237 -5.1326 11.2325 48 1 2.3349 -4.5701 14.8711 49 1 1.3334 -1.7500 4.8769 50 1 2.9555 -1.9136 5.5923 51 1 3.9128 -2.4748 3.4101 52 1 2.9808 -0.9626 3.2507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792490802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:44 Heat of formation + Delta-G solvation = -116.911404 kcal Electronic energy + Delta-G solvation = -29999.139441 eV Core-core repulsion = 25805.681613 eV Total energy + Delta-G solvation = -4193.457829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18936 -39.48546 -38.67086 -37.18335 -35.28697 -34.28060 -34.11225 -32.36780 -31.65730 -30.94809 -27.89266 -27.78158 -27.73756 -26.68647 -24.20766 -23.69404 -22.71220 -21.62053 -20.79167 -19.57146 -19.46958 -18.25248 -17.23465 -16.96286 -16.53750 -15.98460 -15.67960 -15.51703 -15.31251 -15.02351 -14.92183 -14.81683 -14.64090 -14.43251 -14.12535 -13.83297 -13.78893 -13.16223 -12.90691 -12.69169 -12.57099 -12.50752 -12.27962 -12.25784 -12.02970 -11.95948 -11.82547 -11.75858 -11.69824 -11.58418 -11.41439 -11.38242 -10.97741 -10.91670 -10.74777 -10.70861 -10.32884 -10.28390 -9.41416 -9.18159 -9.06679 -8.75260 -8.52212 -7.90013 -6.18227 -4.25261 1.80411 2.54181 3.22957 3.29121 3.31496 3.35694 3.42150 3.55779 4.19088 4.33726 4.38567 4.39049 4.52525 4.55145 4.64638 4.73195 4.91935 4.99663 5.08690 5.09159 5.16293 5.17039 5.17799 5.21250 5.28144 5.31305 5.39674 5.41190 5.48283 5.50221 5.51882 5.55317 5.61547 5.71091 5.80318 5.91747 5.93082 5.99993 6.01490 6.10218 6.14718 6.77526 6.80444 7.07347 7.29090 7.42049 7.50006 7.64819 7.95585 8.03294 8.61092 8.76093 9.08592 9.41548 10.91966 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.001654 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.560192 B =16924.377441 C =17534.187268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.572 6.572 8 N -0.597 5.597 9 C 0.134 3.866 10 C 0.041 3.959 11 N -0.539 5.539 12 C 0.074 3.926 13 C -0.137 4.137 14 C 0.498 3.502 15 O -0.561 6.561 16 N -0.712 5.712 17 C 0.249 3.751 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.034 3.966 27 C 0.117 3.883 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.391 0.609 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.266 0.734 49 H 0.040 0.960 50 H 0.094 0.906 51 H 0.080 0.920 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 8.804 -30.093 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.461 6.461 8 N -0.337 5.337 9 C 0.012 3.988 10 C -0.088 4.088 11 N -0.264 5.264 12 C -0.054 4.054 13 C -0.178 4.178 14 C 0.282 3.718 15 O -0.441 6.441 16 N -0.360 5.360 17 C 0.128 3.872 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.095 4.095 27 C -0.005 4.005 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.223 0.777 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.098 0.902 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.350 8.102 -30.132 31.204 hybrid contribution 0.370 0.826 0.901 1.277 sum 0.719 8.928 -29.230 30.572 Atomic orbital electron populations 1.22513 0.93996 1.05036 1.02496 1.22077 0.94375 0.91548 0.82120 1.21862 1.02276 0.92480 1.03178 1.22509 1.01537 1.03477 0.96458 1.86292 1.71480 1.23591 1.46357 1.17960 0.78622 0.80532 0.81967 1.90882 1.41552 1.70489 1.43208 1.47038 1.53022 1.12377 1.21302 1.21762 1.01321 0.79039 0.96677 1.22501 0.93589 1.01494 0.91194 1.61946 1.46419 1.14164 1.03898 1.21797 0.95778 1.02518 0.85298 1.21636 1.00376 1.03273 0.92525 1.20439 0.85698 0.78894 0.86748 1.90661 1.20719 1.46541 1.86141 1.46471 1.16554 1.64334 1.08682 1.19100 0.95872 0.96826 0.75406 1.21234 0.99821 1.45502 0.91673 0.91877 1.24960 0.96035 0.94742 0.98306 1.69976 1.23628 1.43813 1.14861 0.86409 0.81796 0.78277 0.80387 1.20477 1.20996 1.19734 1.22592 1.00655 0.88909 0.97308 1.21868 0.93954 0.98749 0.85962 0.92174 0.91157 0.89431 0.91427 0.90141 0.91418 0.89419 0.91171 0.92183 0.90164 0.88328 0.88807 0.94139 0.89619 0.93790 0.89592 0.88478 0.77655 0.95617 0.95539 0.92446 0.94170 0.88747 0.90212 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 2 C 0.14 1.09 1.13 -90.62 -0.10 0.99 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.46 16 4 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 5 O -0.36 -3.59 8.57 -40.32 -0.35 -3.94 16 6 C 0.65 7.25 7.75 54.06 0.42 7.67 16 7 O -0.57 -7.33 11.34 -19.28 -0.22 -7.55 16 8 N -0.60 -5.77 3.01 -178.23 -0.54 -6.31 16 9 C 0.13 1.17 6.59 -3.60 -0.02 1.15 16 10 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 11 N -0.54 -5.44 4.63 -234.30 -1.08 -6.52 16 12 C 0.07 0.92 4.25 -3.83 -0.02 0.90 16 13 C -0.14 -1.78 5.63 -27.88 -0.16 -1.94 16 14 C 0.50 9.48 7.83 -10.98 -0.09 9.40 16 15 O -0.56 -13.09 15.98 5.55 0.09 -13.00 16 16 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16 17 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 18 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 19 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.03 0.30 5.46 -3.68 -0.02 0.28 16 27 C 0.12 0.95 6.62 -3.58 -0.02 0.93 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.90 7.07 -51.93 -0.37 0.53 16 39 H 0.09 0.78 7.99 -51.93 -0.41 0.36 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.09 0.94 6.40 -51.93 -0.33 0.61 16 44 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.76 6.16 -51.93 -0.32 0.44 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 52 H 0.09 0.70 6.98 -51.93 -0.36 0.34 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -33.36 410.45 -9.09 -42.45 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -9.03 Total: 2.98 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 0.48 Total: 10.21 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -1.23 Total: -52.99 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.48 Total: -24.49 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.36 -9.09 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792490802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.462 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds