Wall clock time and date at job start Wed Apr 1 2020 00:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47124 * 240.00029 * 2 1 3 5 5 O 1.45195 * 109.47125 * 119.99927 * 2 1 3 6 6 C 1.34638 * 117.00234 * 59.99678 * 5 2 1 7 7 O 1.21506 * 119.99468 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00112 * 180.02562 * 6 5 2 9 9 C 1.47076 * 120.87924 * 180.02562 * 8 6 5 10 10 C 1.53244 * 108.51741 * 231.16043 * 9 8 6 11 11 N 1.46898 * 109.34026 * 306.17179 * 10 9 8 12 12 C 1.46896 * 110.99994 * 187.25468 * 11 10 9 13 13 C 1.52996 * 109.47255 * 169.99594 * 12 11 10 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00446 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46973 * 90.00368 * 22 20 18 24 24 H 1.48497 * 109.46950 * 210.00151 * 22 20 18 25 25 H 1.48504 * 109.47027 * 330.00190 * 22 20 18 26 26 C 1.46900 * 111.27081 * 63.10162 * 11 10 9 27 27 C 1.47080 * 120.87955 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47297 * 300.00466 * 1 2 3 29 29 H 1.09000 * 109.47101 * 60.00280 * 1 2 3 30 30 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46799 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46986 * 299.99791 * 3 2 1 33 33 H 1.08994 * 109.47184 * 59.99940 * 3 2 1 34 34 H 1.09000 * 109.46721 * 299.99877 * 4 2 1 35 35 H 1.09000 * 109.47384 * 59.99864 * 4 2 1 36 36 H 1.09004 * 109.47176 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.63360 * 111.45189 * 9 8 6 38 38 H 1.08994 * 109.78840 * 350.96007 * 9 8 6 39 39 H 1.08995 * 109.49285 * 186.20861 * 10 9 8 40 40 H 1.09004 * 109.49321 * 66.12604 * 10 9 8 41 41 H 1.09004 * 109.47112 * 49.99587 * 12 11 10 42 42 H 1.09000 * 109.47386 * 289.99975 * 12 11 10 43 43 H 1.09004 * 109.47066 * 59.99965 * 13 12 11 44 44 H 1.08994 * 109.47405 * 299.99795 * 13 12 11 45 45 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 46 46 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 47 47 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 48 48 H 0.97000 * 119.99614 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.48879 * 56.85906 * 26 11 10 50 50 H 1.08999 * 109.49054 * 176.93161 * 26 11 10 51 51 H 1.09007 * 109.62450 * 248.54722 * 27 8 6 52 52 H 1.08999 * 109.63307 * 9.12769 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6840 -4.0731 2.6033 10 6 1.1015 -4.2369 4.0112 11 7 2.0589 -3.7182 4.9972 12 6 1.6155 -4.0118 6.3665 13 6 2.7422 -3.6849 7.3486 14 6 2.2870 -3.9855 8.7535 15 8 1.1715 -4.4190 8.9498 16 7 3.1218 -3.7783 9.7911 17 6 2.6815 -4.0762 11.1563 18 6 3.7929 -3.7588 12.1232 19 1 4.7332 -3.3733 11.7574 20 6 3.6091 -3.9596 13.4748 21 7 2.4640 -4.4286 13.9202 22 14 4.9867 -3.5654 14.6734 23 1 4.8662 -2.1540 15.1192 24 1 4.8916 -4.4660 15.8503 25 1 6.2973 -3.7628 14.0036 26 6 2.2848 -2.2782 4.8143 27 6 2.9162 -2.0342 3.4391 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 2.5623 -4.7092 2.4942 38 1 0.9351 -4.3526 1.8624 39 1 0.9141 -5.2927 4.2067 40 1 0.1666 -3.6813 4.0850 41 1 1.3587 -5.0681 6.4467 42 1 0.7404 -3.4063 6.6028 43 1 2.9989 -2.6285 7.2685 44 1 3.6171 -4.2904 7.1125 45 1 4.0141 -3.4318 9.6341 46 1 1.8075 -3.4708 11.3964 47 1 2.4237 -5.1326 11.2325 48 1 2.3349 -4.5701 14.8711 49 1 1.3334 -1.7500 4.8769 50 1 2.9555 -1.9136 5.5923 51 1 3.9128 -2.4748 3.4101 52 1 2.9808 -0.9626 3.2507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792490802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:43 Heat of formation + Delta-G solvation = -141.082428 kcal Electronic energy + Delta-G solvation = -30000.187576 eV Core-core repulsion = 25805.681613 eV Total energy + Delta-G solvation = -4194.505963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95084 -40.69288 -39.84349 -37.99694 -36.28983 -35.98515 -34.87582 -34.33791 -32.53057 -31.92819 -29.48450 -28.35708 -28.28052 -27.96652 -25.14504 -24.92377 -23.95021 -22.82133 -21.53425 -21.17230 -20.20530 -19.09077 -18.84439 -17.78733 -17.52206 -17.30751 -17.04673 -16.79459 -16.37193 -16.16203 -15.93504 -15.77627 -15.56409 -15.42803 -15.24617 -14.90807 -14.46469 -14.41173 -14.21611 -13.92105 -13.67005 -13.44790 -13.23771 -13.06930 -13.00620 -12.92005 -12.85387 -12.80127 -12.70626 -12.48382 -12.40799 -12.35062 -12.29497 -12.21165 -12.12777 -11.72091 -11.47392 -11.38423 -11.06120 -10.79526 -10.74985 -9.95107 -9.80537 -9.37682 -8.28448 -6.44992 1.09765 1.44238 1.46455 1.57767 1.72397 1.80395 2.29937 2.47018 2.80093 3.00531 3.06629 3.75066 3.79470 3.81569 3.81990 3.93160 3.96196 4.02732 4.15967 4.22772 4.32199 4.40523 4.42828 4.54557 4.61448 4.62475 4.71088 4.76005 4.77551 4.83025 4.85860 4.89074 4.89217 4.92782 4.99283 5.06164 5.12502 5.14649 5.25517 5.28467 5.30811 5.39987 5.46930 5.50716 5.71510 5.86194 5.87146 5.98390 6.30145 6.66719 6.93659 7.24038 7.24736 7.53201 8.83694 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.001654 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.560192 B =16924.377441 C =17534.187268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.595 6.595 8 N -0.599 5.599 9 C 0.138 3.862 10 C 0.043 3.957 11 N -0.531 5.531 12 C 0.081 3.919 13 C -0.118 4.118 14 C 0.494 3.506 15 O -0.609 6.609 16 N -0.707 5.707 17 C 0.264 3.736 18 C -0.556 4.556 19 H 0.086 0.914 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.254 1.254 26 C 0.033 3.967 27 C 0.121 3.879 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.410 0.590 46 H -0.014 1.014 47 H -0.014 1.014 48 H 0.268 0.732 49 H 0.027 0.973 50 H 0.111 0.889 51 H 0.094 0.906 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 10.479 -31.242 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.235 4.235 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.487 6.487 8 N -0.340 5.340 9 C 0.017 3.983 10 C -0.086 4.086 11 N -0.256 5.256 12 C -0.048 4.048 13 C -0.157 4.157 14 C 0.282 3.718 15 O -0.492 6.492 16 N -0.357 5.357 17 C 0.141 3.859 18 C -0.594 4.594 19 H 0.104 0.896 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.178 1.178 26 C -0.095 4.095 27 C -0.001 4.001 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.246 0.754 46 H 0.004 0.996 47 H 0.004 0.996 48 H 0.077 0.923 49 H 0.046 0.954 50 H 0.129 0.871 51 H 0.112 0.888 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.308 9.803 -31.325 32.989 hybrid contribution -0.626 0.303 1.180 1.369 sum 2.681 10.107 -30.145 31.907 Atomic orbital electron populations 1.22466 0.94309 1.03490 1.03391 1.22402 0.94335 0.92779 0.81656 1.21878 1.02550 0.90616 1.04203 1.22452 1.01673 1.02118 0.97238 1.86297 1.71461 1.22954 1.47271 1.18155 0.78486 0.80906 0.82094 1.90875 1.42578 1.71044 1.44159 1.47195 1.52907 1.12597 1.21254 1.21743 1.01669 0.79024 0.95904 1.22515 0.92904 1.01830 0.91303 1.61962 1.46030 1.15068 1.02502 1.21623 0.94991 1.01440 0.86699 1.21560 1.00960 1.05627 0.87594 1.21539 0.84599 0.77022 0.88655 1.90644 1.22987 1.48379 1.87142 1.46209 1.17795 1.64801 1.06906 1.18531 0.94911 0.93597 0.78835 1.21646 1.00474 1.45206 0.92041 0.89645 1.26080 0.98751 0.94235 1.00633 1.70143 1.26288 1.45166 1.15433 0.85152 0.78638 0.78063 0.77331 1.19646 1.21101 1.17802 1.22685 1.00521 0.87865 0.98463 1.21951 0.94052 0.99337 0.84744 0.92364 0.89164 0.92105 0.90975 0.88109 0.91406 0.92024 0.89237 0.91827 0.88829 0.89000 0.87922 0.95504 0.90856 0.95851 0.86491 0.85739 0.75411 0.99643 0.99555 0.92315 0.95434 0.87111 0.88777 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.37 71.98 0.60 -2.19 16 2 C 0.12 1.86 1.13 -10.79 -0.01 1.84 16 3 C -0.14 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.18 -2.56 8.37 71.98 0.60 -1.96 16 5 O -0.37 -6.90 8.57 -55.47 -0.48 -7.38 16 6 C 0.65 14.13 7.75 129.79 1.01 15.14 16 7 O -0.60 -15.58 11.34 19.82 0.22 -15.36 16 8 N -0.60 -10.93 3.01 -948.21 -2.85 -13.78 16 9 C 0.14 2.30 6.59 86.35 0.57 2.87 16 10 C 0.04 0.77 5.62 86.39 0.49 1.25 16 11 N -0.53 -9.77 4.63 -895.19 -4.14 -13.91 16 12 C 0.08 1.94 4.25 86.30 0.37 2.30 16 13 C -0.12 -2.76 5.63 29.85 0.17 -2.59 16 14 C 0.49 18.72 7.83 87.66 0.69 19.41 16 15 O -0.61 -29.41 15.98 -3.04 -0.05 -29.46 16 16 N -0.71 -28.77 5.55 -466.79 -2.59 -31.36 16 17 C 0.26 14.37 5.43 85.63 0.46 14.84 16 18 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 19 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 22 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 26 C 0.03 0.52 5.46 86.39 0.47 0.99 16 27 C 0.12 1.69 6.62 86.36 0.57 2.26 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.68 7.07 -2.39 -0.02 1.67 16 39 H 0.10 1.64 7.99 -2.39 -0.02 1.62 16 40 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.07 1.95 7.93 -2.38 -0.02 1.93 16 42 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 43 H 0.12 2.11 6.40 -2.38 -0.02 2.09 16 44 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.41 13.41 8.32 -92.71 -0.77 12.64 16 46 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 48 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.11 1.39 6.16 -2.39 -0.01 1.37 16 51 H 0.09 1.09 8.14 -2.38 -0.02 1.08 16 52 H 0.10 1.29 6.98 -2.39 -0.02 1.27 16 Total: -1.00 -76.17 410.45 -0.12 -76.29 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.14 Total: 22.29 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.32 Total: 24.56 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -9.30 Total: -114.79 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.30 Total: -52.20 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -76.17 -0.12 -76.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792490802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.796 kcal (2) G-P(sol) polarization free energy of solvation -76.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds