Wall clock time and date at job start Wed Apr 1 2020 00:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34780 * 120.00423 * 2 1 4 4 O 1.21510 * 120.00222 * 180.02562 * 3 2 1 5 5 O 1.34632 * 119.99353 * 359.97438 * 3 2 1 6 6 C 1.45212 * 116.99684 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47104 * 60.00095 * 6 5 3 8 8 C 1.52997 * 109.47068 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.46872 * 300.00040 * 6 5 3 10 10 C 1.46503 * 119.99893 * 179.97438 * 2 1 3 11 11 H 1.09001 * 109.49862 * 180.02562 * 10 2 1 12 12 C 1.53036 * 109.49862 * 300.06759 * 10 2 1 13 13 C 1.53107 * 109.50350 * 181.31467 * 12 10 2 14 14 C 1.53189 * 109.33024 * 298.65536 * 13 12 10 15 15 N 1.46928 * 108.77406 * 54.63889 * 14 13 12 16 16 C 1.34777 * 120.63122 * 126.37069 * 15 14 13 17 17 O 1.21588 * 119.99947 * 174.97798 * 16 15 14 18 18 N 1.34777 * 119.99897 * 354.98314 * 16 15 14 19 19 C 1.46503 * 119.99643 * 185.07354 * 18 16 15 20 20 C 1.50700 * 109.46901 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00153 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99625 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00373 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46900 * 60.00715 * 24 22 20 26 26 H 1.48501 * 109.47070 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47573 * 300.00510 * 24 22 20 28 28 C 1.46921 * 118.73789 * 306.38289 * 15 14 13 29 29 H 1.08995 * 109.47228 * 270.00137 * 1 2 3 30 30 H 1.09003 * 109.47024 * 30.00347 * 1 2 3 31 31 H 1.09005 * 109.47550 * 149.99701 * 1 2 3 32 32 H 1.08999 * 109.47227 * 60.00083 * 7 6 5 33 33 H 1.08999 * 109.47310 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47214 * 300.00178 * 7 6 5 35 35 H 1.09002 * 109.47071 * 60.00310 * 8 6 5 36 36 H 1.08999 * 109.46789 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47153 * 299.99850 * 8 6 5 38 38 H 1.09007 * 109.47011 * 60.00088 * 9 6 5 39 39 H 1.08999 * 109.46943 * 179.97438 * 9 6 5 40 40 H 1.08993 * 109.47334 * 300.00429 * 9 6 5 41 41 H 1.08997 * 109.46007 * 301.36332 * 12 10 2 42 42 H 1.09000 * 109.46019 * 61.33053 * 12 10 2 43 43 H 1.08994 * 109.49025 * 178.69717 * 13 12 10 44 44 H 1.08999 * 109.51494 * 58.62913 * 13 12 10 45 45 H 1.08994 * 109.59109 * 294.84738 * 14 13 12 46 46 H 1.09009 * 109.70452 * 174.49096 * 14 13 12 47 47 H 0.96991 * 120.00163 * 5.06742 * 18 16 15 48 48 H 1.08999 * 109.47133 * 299.99925 * 19 18 16 49 49 H 1.09000 * 109.46932 * 59.99928 * 19 18 16 50 50 H 0.97007 * 119.99878 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.59041 * 293.83222 * 28 15 14 52 52 H 1.09000 * 109.59120 * 173.39618 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1671 -0.0005 5 8 1.4657 2.3331 -0.0005 6 6 2.2566 3.5509 -0.0011 7 6 3.1392 3.5853 -1.2503 8 6 1.3246 4.7643 -0.0010 9 6 3.1392 3.5863 1.2482 10 6 2.1974 -1.2688 0.0006 11 1 3.2692 -1.0701 0.0009 12 6 1.8269 -2.0720 1.2494 13 6 2.6169 -3.3833 1.2668 14 6 2.2508 -4.2123 0.0317 15 7 2.4676 -3.3934 -1.1687 16 6 3.2401 -3.8440 -2.1770 17 8 3.3386 -3.1985 -3.2027 18 7 3.9034 -5.0102 -2.0484 19 6 4.8293 -5.4457 -3.0970 20 6 5.4362 -6.7704 -2.7126 21 1 5.1597 -7.2411 -1.7808 22 6 6.3438 -7.3820 -3.5512 23 7 6.6802 -6.8092 -4.6862 24 14 7.0968 -9.0238 -3.0744 25 1 6.0202 -10.0338 -2.9131 26 1 8.0351 -9.4653 -4.1373 27 1 7.8338 -8.8771 -1.7936 28 6 1.8265 -2.0739 -1.2490 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 2.5104 3.5600 -2.1403 33 1 3.7332 4.4992 -1.2505 34 1 3.8032 2.7208 -1.2499 35 1 0.6962 4.7396 0.8893 36 1 1.9183 5.6784 -0.0009 37 1 0.6955 4.7393 -0.8907 38 1 3.8032 2.7218 1.2485 39 1 3.7332 4.5002 1.2476 40 1 2.5105 3.5618 2.1381 41 1 2.0671 -1.4906 2.1396 42 1 0.7593 -2.2916 1.2364 43 1 2.3701 -3.9446 2.1679 44 1 3.6848 -3.1653 1.2551 45 1 1.2033 -4.5085 0.0877 46 1 2.8799 -5.1014 -0.0139 47 1 3.7679 -5.5610 -1.2617 48 1 4.2888 -5.5525 -4.0375 49 1 5.6199 -4.7045 -3.2144 50 1 7.3191 -7.2394 -5.2760 51 1 0.7445 -2.1956 -1.2973 52 1 2.1776 -1.5505 -2.1383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807183379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:17 Heat of formation + Delta-G solvation = -104.170033 kcal Electronic energy + Delta-G solvation = -31275.139785 eV Core-core repulsion = 27082.234463 eV Total energy + Delta-G solvation = -4192.905321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09672 -39.96353 -38.28790 -36.77084 -35.41913 -34.26560 -34.07226 -32.47191 -32.06295 -30.24586 -27.69964 -27.58934 -27.36656 -27.03607 -25.13003 -23.95073 -22.41980 -22.03008 -20.42822 -19.48592 -19.13160 -18.28227 -17.83313 -16.91860 -16.49967 -16.04494 -15.79029 -15.60582 -15.04484 -14.78797 -14.67491 -14.52628 -14.30398 -14.03367 -13.79690 -13.66980 -13.27108 -13.14591 -12.98535 -12.86130 -12.70224 -12.55774 -12.42294 -12.13341 -12.08160 -11.96794 -11.76298 -11.69035 -11.54094 -11.46118 -11.10616 -11.05543 -10.94752 -10.85638 -10.77050 -10.56389 -10.26255 -10.12129 -9.38967 -9.34987 -9.09332 -8.70655 -8.36377 -7.71751 -6.12785 -4.19558 1.88044 2.68550 3.14641 3.27323 3.32290 3.34016 3.65288 3.88088 4.32750 4.46569 4.50407 4.52982 4.63188 4.65822 4.72078 4.80563 4.90285 4.93266 5.16365 5.19716 5.22281 5.23044 5.25630 5.29367 5.35133 5.43038 5.48999 5.49765 5.52671 5.63041 5.63372 5.71536 5.73743 5.76731 5.85447 6.00306 6.04860 6.09046 6.15329 6.24170 6.32391 6.74102 7.10733 7.16495 7.52409 7.54961 7.60109 7.86740 8.04119 8.19209 8.77041 8.91111 9.32547 9.49165 10.97370 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.002275 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.871551 B =12302.058333 C =12971.443324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.592 5.592 3 C 0.652 3.348 4 O -0.562 6.562 5 O -0.362 6.362 6 C 0.135 3.865 7 C -0.185 4.185 8 C -0.139 4.139 9 C -0.183 4.183 10 C 0.140 3.860 11 H 0.110 0.890 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.110 3.890 15 N -0.636 5.636 16 C 0.698 3.302 17 O -0.595 6.595 18 N -0.728 5.728 19 C 0.266 3.734 20 C -0.542 4.542 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.386 0.614 48 H 0.026 0.974 49 H 0.024 0.976 50 H 0.266 0.734 51 H 0.063 0.937 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 18.314 15.676 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.332 5.332 3 C 0.407 3.593 4 O -0.451 6.451 5 O -0.277 6.277 6 C 0.098 3.902 7 C -0.242 4.242 8 C -0.196 4.196 9 C -0.240 4.240 10 C 0.037 3.963 11 H 0.128 0.872 12 C -0.162 4.162 13 C -0.171 4.171 14 C -0.014 4.014 15 N -0.376 5.376 16 C 0.400 3.600 17 O -0.474 6.474 18 N -0.382 5.382 19 C 0.145 3.855 20 C -0.580 4.580 21 H 0.079 0.921 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C 0.001 3.999 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.221 0.779 48 H 0.044 0.956 49 H 0.042 0.958 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.606 18.827 14.686 27.991 hybrid contribution 0.335 -1.108 0.635 1.320 sum -14.272 17.719 15.322 27.430 Atomic orbital electron populations 1.21781 0.78775 1.03665 1.02048 1.46643 1.07165 1.03110 1.76331 1.17992 0.84016 0.81169 0.76123 1.90922 1.12224 1.86609 1.55306 1.86288 1.40994 1.13748 1.86697 1.22075 0.90871 0.80592 0.96618 1.22524 1.00714 1.04637 0.96321 1.21848 0.99550 0.94988 1.03256 1.22509 1.00625 1.04583 0.96281 1.21551 0.98583 0.80672 0.95541 0.87165 1.21868 1.00702 0.96257 0.97411 1.21926 1.01302 0.95667 0.98207 1.21622 1.01330 0.94028 0.84372 1.47186 1.53556 1.18070 1.18744 1.16034 0.78691 0.82470 0.82845 1.90871 1.68634 1.59485 1.28393 1.45880 1.46220 1.20285 1.25815 1.18995 0.86787 0.94324 0.85386 1.21168 1.25931 1.04869 1.06064 0.92063 1.24945 0.96224 0.98117 0.94736 1.69973 1.32920 1.38874 1.10446 0.86472 0.79013 0.83212 0.78165 1.20101 1.21094 1.20097 1.21542 0.96799 0.83241 0.98285 0.92508 0.90426 0.90546 0.92097 0.91168 0.89204 0.91587 0.90178 0.91471 0.89326 0.91171 0.92316 0.91353 0.91314 0.90196 0.90838 0.91584 0.89658 0.77926 0.95644 0.95792 0.92412 0.91921 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 9.53 59.84 0.57 1.18 16 2 N -0.59 -6.60 2.76 -179.59 -0.50 -7.10 16 3 C 0.65 8.54 7.70 54.06 0.42 8.96 16 4 O -0.56 -8.88 11.21 -19.28 -0.22 -9.10 16 5 O -0.36 -4.09 8.71 -40.30 -0.35 -4.44 16 6 C 0.14 1.30 1.13 -90.62 -0.10 1.19 16 7 C -0.18 -1.89 8.37 37.15 0.31 -1.58 16 8 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 9 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 10 C 0.14 1.69 2.67 -67.81 -0.18 1.51 16 11 H 0.11 1.68 6.90 -51.93 -0.36 1.32 16 12 C -0.12 -1.15 5.15 -26.66 -0.14 -1.28 16 13 C -0.13 -1.26 6.08 -26.58 -0.16 -1.42 16 14 C 0.11 1.27 6.43 -3.71 -0.02 1.24 16 15 N -0.64 -9.98 2.97 -178.50 -0.53 -10.51 16 16 C 0.70 14.95 8.30 -86.92 -0.72 14.23 16 17 O -0.60 -15.35 15.79 5.29 0.08 -15.27 16 18 N -0.73 -15.97 5.46 -66.41 -0.36 -16.33 16 19 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 20 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 21 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.88 -26.38 13.29 55.43 0.74 -25.64 16 24 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.13 1.75 5.77 -3.71 -0.02 1.73 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.57 7.37 -51.93 -0.38 0.19 16 31 H 0.08 0.51 6.34 -51.93 -0.33 0.18 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.19 5.88 -51.92 -0.31 0.89 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.07 5.88 -51.92 -0.31 0.76 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.53 7.72 -51.93 -0.40 0.13 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.00 5.56 -51.92 -0.29 0.72 16 47 H 0.39 7.23 5.78 -40.82 -0.24 6.99 16 48 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.06 0.72 6.48 -51.93 -0.34 0.38 16 52 H 0.10 1.65 7.03 -51.93 -0.37 1.28 16 LS Contribution 404.42 15.07 6.09 6.09 Total: -1.00 -34.91 404.42 -8.68 -43.59 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.76 Total: 5.26 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 0.14 Total: 17.49 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.65 Total: -59.59 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.48 Total: -28.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.91 -8.68 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807183379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.577 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds