Wall clock time and date at job start Wed Apr 1 2020 00:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34780 * 120.00423 * 2 1 4 4 O 1.21510 * 120.00222 * 180.02562 * 3 2 1 5 5 O 1.34632 * 119.99353 * 359.97438 * 3 2 1 6 6 C 1.45212 * 116.99684 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47104 * 60.00095 * 6 5 3 8 8 C 1.52997 * 109.47068 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.46872 * 300.00040 * 6 5 3 10 10 C 1.46503 * 119.99893 * 179.97438 * 2 1 3 11 11 H 1.09001 * 109.49862 * 180.02562 * 10 2 1 12 12 C 1.53036 * 109.49862 * 300.06759 * 10 2 1 13 13 C 1.53107 * 109.50350 * 181.31467 * 12 10 2 14 14 C 1.53189 * 109.33024 * 298.65536 * 13 12 10 15 15 N 1.46928 * 108.77406 * 54.63889 * 14 13 12 16 16 C 1.34777 * 120.63122 * 126.37069 * 15 14 13 17 17 O 1.21588 * 119.99947 * 174.97798 * 16 15 14 18 18 N 1.34777 * 119.99897 * 354.98314 * 16 15 14 19 19 C 1.46503 * 119.99643 * 185.07354 * 18 16 15 20 20 C 1.50700 * 109.46901 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00153 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99625 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00373 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46900 * 60.00715 * 24 22 20 26 26 H 1.48501 * 109.47070 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47573 * 300.00510 * 24 22 20 28 28 C 1.46921 * 118.73789 * 306.38289 * 15 14 13 29 29 H 1.08995 * 109.47228 * 270.00137 * 1 2 3 30 30 H 1.09003 * 109.47024 * 30.00347 * 1 2 3 31 31 H 1.09005 * 109.47550 * 149.99701 * 1 2 3 32 32 H 1.08999 * 109.47227 * 60.00083 * 7 6 5 33 33 H 1.08999 * 109.47310 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47214 * 300.00178 * 7 6 5 35 35 H 1.09002 * 109.47071 * 60.00310 * 8 6 5 36 36 H 1.08999 * 109.46789 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47153 * 299.99850 * 8 6 5 38 38 H 1.09007 * 109.47011 * 60.00088 * 9 6 5 39 39 H 1.08999 * 109.46943 * 179.97438 * 9 6 5 40 40 H 1.08993 * 109.47334 * 300.00429 * 9 6 5 41 41 H 1.08997 * 109.46007 * 301.36332 * 12 10 2 42 42 H 1.09000 * 109.46019 * 61.33053 * 12 10 2 43 43 H 1.08994 * 109.49025 * 178.69717 * 13 12 10 44 44 H 1.08999 * 109.51494 * 58.62913 * 13 12 10 45 45 H 1.08994 * 109.59109 * 294.84738 * 14 13 12 46 46 H 1.09009 * 109.70452 * 174.49096 * 14 13 12 47 47 H 0.96991 * 120.00163 * 5.06742 * 18 16 15 48 48 H 1.08999 * 109.47133 * 299.99925 * 19 18 16 49 49 H 1.09000 * 109.46932 * 59.99928 * 19 18 16 50 50 H 0.97007 * 119.99878 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.59041 * 293.83222 * 28 15 14 52 52 H 1.09000 * 109.59120 * 173.39618 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1671 -0.0005 5 8 1.4657 2.3331 -0.0005 6 6 2.2566 3.5509 -0.0011 7 6 3.1392 3.5853 -1.2503 8 6 1.3246 4.7643 -0.0010 9 6 3.1392 3.5863 1.2482 10 6 2.1974 -1.2688 0.0006 11 1 3.2692 -1.0701 0.0009 12 6 1.8269 -2.0720 1.2494 13 6 2.6169 -3.3833 1.2668 14 6 2.2508 -4.2123 0.0317 15 7 2.4676 -3.3934 -1.1687 16 6 3.2401 -3.8440 -2.1770 17 8 3.3386 -3.1985 -3.2027 18 7 3.9034 -5.0102 -2.0484 19 6 4.8293 -5.4457 -3.0970 20 6 5.4362 -6.7704 -2.7126 21 1 5.1597 -7.2411 -1.7808 22 6 6.3438 -7.3820 -3.5512 23 7 6.6802 -6.8092 -4.6862 24 14 7.0968 -9.0238 -3.0744 25 1 6.0202 -10.0338 -2.9131 26 1 8.0351 -9.4653 -4.1373 27 1 7.8338 -8.8771 -1.7936 28 6 1.8265 -2.0739 -1.2490 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 2.5104 3.5600 -2.1403 33 1 3.7332 4.4992 -1.2505 34 1 3.8032 2.7208 -1.2499 35 1 0.6962 4.7396 0.8893 36 1 1.9183 5.6784 -0.0009 37 1 0.6955 4.7393 -0.8907 38 1 3.8032 2.7218 1.2485 39 1 3.7332 4.5002 1.2476 40 1 2.5105 3.5618 2.1381 41 1 2.0671 -1.4906 2.1396 42 1 0.7593 -2.2916 1.2364 43 1 2.3701 -3.9446 2.1679 44 1 3.6848 -3.1653 1.2551 45 1 1.2033 -4.5085 0.0877 46 1 2.8799 -5.1014 -0.0139 47 1 3.7679 -5.5610 -1.2617 48 1 4.2888 -5.5525 -4.0375 49 1 5.6199 -4.7045 -3.2144 50 1 7.3191 -7.2394 -5.2760 51 1 0.7445 -2.1956 -1.2973 52 1 2.1776 -1.5505 -2.1383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807183379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:16 Heat of formation + Delta-G solvation = -128.270151 kcal Electronic energy + Delta-G solvation = -31276.184844 eV Core-core repulsion = 27082.234463 eV Total energy + Delta-G solvation = -4193.950381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06747 -41.34178 -39.46290 -37.87757 -36.49328 -36.22713 -34.97778 -34.34790 -33.29846 -31.33125 -29.24182 -28.39046 -28.30950 -27.88931 -26.43166 -25.08274 -24.25679 -22.99170 -21.63687 -20.64852 -20.35500 -19.65541 -18.84264 -18.10644 -17.78511 -17.53557 -17.20615 -16.74563 -16.52960 -16.23780 -15.74310 -15.56349 -15.36499 -15.10350 -14.97340 -14.63996 -14.59297 -14.41871 -14.17330 -13.94311 -13.79728 -13.66020 -13.42386 -13.18016 -13.11697 -12.90837 -12.88344 -12.84069 -12.67188 -12.55422 -12.45529 -12.29917 -12.25160 -12.00601 -11.96373 -11.73522 -11.50152 -11.40969 -11.19662 -11.07783 -10.79475 -10.19971 -9.87938 -9.34231 -8.27965 -6.45147 0.96578 1.43391 1.48566 1.56335 1.66325 1.79559 2.17008 2.38938 2.82819 3.06667 3.16384 3.62661 3.71004 3.74408 3.78965 3.90657 3.93824 3.98878 4.10039 4.30509 4.43457 4.50210 4.51598 4.59214 4.62603 4.67491 4.73315 4.74672 4.75302 4.82296 4.87788 4.89236 4.95446 5.00389 5.07487 5.11210 5.12417 5.24692 5.26134 5.26722 5.32817 5.38448 5.46375 5.46668 5.57267 5.69263 5.83529 6.06471 6.24039 6.65839 7.14741 7.23188 7.24968 7.65652 8.84294 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.002275 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.871551 B =12302.058333 C =12971.443324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.590 5.590 3 C 0.644 3.356 4 O -0.599 6.599 5 O -0.359 6.359 6 C 0.124 3.876 7 C -0.182 4.182 8 C -0.132 4.132 9 C -0.178 4.178 10 C 0.148 3.852 11 H 0.068 0.932 12 C -0.113 4.113 13 C -0.126 4.126 14 C 0.102 3.898 15 N -0.625 5.625 16 C 0.692 3.308 17 O -0.650 6.650 18 N -0.721 5.721 19 C 0.285 3.715 20 C -0.554 4.554 21 H 0.085 0.915 22 C 0.002 3.998 23 N -0.932 5.932 24 Si 0.988 3.012 25 H -0.260 1.260 26 H -0.286 1.286 27 H -0.262 1.262 28 C 0.128 3.872 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.049 0.951 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.404 0.596 48 H -0.015 1.015 49 H -0.019 1.019 50 H 0.269 0.731 51 H 0.099 0.901 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 17.543 19.014 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C 0.399 3.601 4 O -0.490 6.490 5 O -0.273 6.273 6 C 0.088 3.912 7 C -0.240 4.240 8 C -0.189 4.189 9 C -0.235 4.235 10 C 0.044 3.956 11 H 0.086 0.914 12 C -0.151 4.151 13 C -0.164 4.164 14 C -0.020 4.020 15 N -0.363 5.363 16 C 0.394 3.606 17 O -0.532 6.532 18 N -0.377 5.377 19 C 0.162 3.838 20 C -0.592 4.592 21 H 0.103 0.897 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.811 3.189 25 H -0.184 1.184 26 H -0.212 1.212 27 H -0.186 1.186 28 C 0.003 3.997 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.068 0.932 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.242 0.758 48 H 0.003 0.997 49 H -0.001 1.001 50 H 0.078 0.922 51 H 0.117 0.883 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.123 18.069 18.120 30.790 hybrid contribution 1.044 -0.739 -0.419 1.346 sum -16.079 17.330 17.701 29.533 Atomic orbital electron populations 1.22049 0.76166 1.04558 1.03855 1.46738 1.08635 1.02085 1.75560 1.18274 0.83781 0.82084 0.75968 1.90916 1.14005 1.87198 1.56851 1.86300 1.40948 1.13644 1.86398 1.22418 0.91678 0.81000 0.96105 1.22488 1.00524 1.03968 0.96993 1.21858 0.99288 0.93890 1.03856 1.22449 1.00393 1.04041 0.96608 1.21328 0.96606 0.81382 0.96306 0.91366 1.21836 1.02455 0.95362 0.95478 1.21918 1.00011 0.95931 0.98573 1.22042 1.03545 0.93512 0.82896 1.47186 1.51630 1.18945 1.18534 1.16253 0.79079 0.81867 0.83444 1.90829 1.70464 1.60776 1.31173 1.45451 1.45722 1.21121 1.25399 1.18412 0.86007 0.93896 0.85467 1.21543 1.26010 1.04626 1.07031 0.89674 1.26115 0.96566 1.02696 0.94367 1.70153 1.33737 1.41120 1.11990 0.85158 0.78195 0.77505 0.78042 1.18391 1.21182 1.18614 1.21653 0.98318 0.82133 0.97584 0.90132 0.90240 0.89038 0.92190 0.89080 0.92890 0.90609 0.88130 0.91224 0.92576 0.89246 0.91359 0.90670 0.88098 0.86393 0.93191 0.87879 0.89985 0.75755 0.99694 1.00139 0.92247 0.88263 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 9.53 127.77 1.22 2.17 16 2 N -0.59 -12.84 2.76 -952.52 -2.63 -15.47 16 3 C 0.64 17.40 7.70 129.79 1.00 18.40 16 4 O -0.60 -20.48 11.21 19.81 0.22 -20.26 16 5 O -0.36 -8.00 8.71 -55.41 -0.48 -8.48 16 6 C 0.12 2.33 1.13 -10.80 -0.01 2.31 16 7 C -0.18 -3.88 8.37 71.98 0.60 -3.28 16 8 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 9 C -0.18 -3.27 8.37 71.98 0.60 -2.67 16 10 C 0.15 3.55 2.67 45.07 0.12 3.67 16 11 H 0.07 2.24 6.90 -2.39 -0.02 2.22 16 12 C -0.11 -1.75 5.15 30.64 0.16 -1.59 16 13 C -0.13 -2.03 6.08 30.69 0.19 -1.85 16 14 C 0.10 2.06 6.43 86.36 0.56 2.62 16 15 N -0.62 -19.59 2.97 -836.90 -2.49 -22.07 16 16 C 0.69 31.05 8.30 179.05 1.49 32.54 16 17 O -0.65 -36.08 15.79 -3.99 -0.06 -36.14 16 18 N -0.72 -32.77 5.46 -482.29 -2.63 -35.40 16 19 C 0.29 16.46 5.43 85.63 0.47 16.93 16 20 C -0.55 -30.82 9.28 25.60 0.24 -30.59 16 21 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 22 C 0.00 0.12 5.46 84.65 0.46 0.58 16 23 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 24 Si 0.99 42.76 29.54 68.60 2.03 44.78 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 C 0.13 3.54 5.77 86.37 0.50 4.04 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 1.01 7.37 -2.39 -0.02 0.99 16 31 H 0.09 0.88 6.34 -2.38 -0.02 0.87 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.54 5.88 -2.38 -0.01 1.53 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 1.43 5.88 -2.38 -0.01 1.42 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.99 7.72 -2.39 -0.02 0.98 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 1.74 5.56 -2.38 -0.01 1.73 16 47 H 0.40 15.05 5.78 -92.71 -0.54 14.52 16 48 H -0.01 -0.97 8.14 -2.39 -0.02 -0.98 16 49 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 50 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 51 H 0.10 2.04 6.48 -2.39 -0.02 2.02 16 52 H 0.05 1.97 7.03 -2.39 -0.02 1.96 16 Total: -1.00 -84.66 404.42 2.83 -81.83 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.38 Total: 25.97 kcal Atomic # 6 Polarization: 34.24 SS G_CDS: 8.22 Total: 42.45 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -7.47 Total: -130.15 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -0.32 Total: -64.88 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -84.66 2.83 -81.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807183379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.439 kcal (2) G-P(sol) polarization free energy of solvation -84.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds