Wall clock time and date at job start Wed Apr 1 2020 00:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47538 * 2 1 4 4 H 1.09004 * 109.46514 * 55.00207 * 3 2 1 5 5 C 1.52997 * 109.47124 * 295.00100 * 3 2 1 6 6 C 1.52998 * 109.47345 * 174.99742 * 3 2 1 7 7 H 1.09000 * 109.46861 * 305.00512 * 6 3 2 8 8 N 1.46493 * 109.47297 * 185.00161 * 6 3 2 9 9 C 1.34776 * 120.00147 * 154.99937 * 8 6 3 10 10 O 1.21278 * 120.00242 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99823 * 180.02562 * 9 8 6 12 12 N 1.46902 * 109.46902 * 180.02562 * 11 9 8 13 13 C 1.46957 * 110.99773 * 293.79981 * 12 11 9 14 14 C 1.53057 * 109.36425 * 176.81480 * 13 12 11 15 15 N 1.46950 * 109.36695 * 58.39605 * 14 13 12 16 16 C 1.46902 * 111.00141 * 176.81086 * 15 14 13 17 17 C 1.50699 * 109.47229 * 293.80454 * 16 15 14 18 18 H 1.07999 * 119.99707 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00051 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00167 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47301 * 89.99731 * 21 19 17 23 23 H 1.48511 * 109.46929 * 210.00020 * 21 19 17 24 24 H 1.48497 * 109.46821 * 329.99363 * 21 19 17 25 25 C 1.46955 * 110.88422 * 300.68850 * 15 14 13 26 26 C 1.46952 * 111.00073 * 170.00149 * 12 11 9 27 27 C 1.50706 * 109.46927 * 65.00135 * 6 3 2 28 28 O 1.20825 * 119.99859 * 119.99464 * 27 6 3 29 29 O 1.34224 * 120.00295 * 300.00423 * 27 6 3 30 30 H 1.09003 * 109.46790 * 59.99387 * 1 2 3 31 31 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46922 * 299.99994 * 1 2 3 33 33 H 1.09006 * 109.46974 * 240.00045 * 2 1 3 34 34 H 1.08999 * 109.47128 * 120.00242 * 2 1 3 35 35 H 1.08996 * 109.47226 * 300.00031 * 5 3 2 36 36 H 1.09001 * 109.46995 * 60.00080 * 5 3 2 37 37 H 1.09002 * 109.47240 * 179.97438 * 5 3 2 38 38 H 0.97006 * 120.00008 * 335.00621 * 8 6 3 39 39 H 1.09000 * 109.47635 * 300.00062 * 11 9 8 40 40 H 1.08996 * 109.47253 * 60.00289 * 11 9 8 41 41 H 1.08997 * 109.49090 * 296.77759 * 13 12 11 42 42 H 1.08995 * 109.49114 * 56.84553 * 13 12 11 43 43 H 1.09005 * 109.48453 * 298.42973 * 14 13 12 44 44 H 1.09001 * 109.48947 * 178.37458 * 14 13 12 45 45 H 1.09000 * 109.46733 * 53.80698 * 16 15 14 46 46 H 1.08998 * 109.46810 * 173.80374 * 16 15 14 47 47 H 0.96998 * 120.00531 * 180.02562 * 20 19 17 48 48 H 1.09010 * 109.48428 * 299.34728 * 25 15 14 49 49 H 1.08998 * 109.50955 * 179.29814 * 25 15 14 50 50 H 1.09001 * 109.49353 * 303.15683 * 26 12 11 51 51 H 1.09005 * 109.49268 * 63.21947 * 26 12 11 52 52 H 0.96700 * 117.00196 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.8570 0.8799 1.0113 8 7 4.0434 2.8236 0.2459 9 6 5.2191 3.0786 0.8535 10 8 5.8812 2.1661 1.3004 11 6 5.7110 4.4977 0.9775 12 7 7.0052 4.5083 1.6725 13 6 6.8576 4.0696 3.0672 14 6 8.2354 4.0185 3.7317 15 7 8.8588 5.3475 3.6638 16 6 10.1530 5.3582 4.3588 17 6 9.9326 5.1440 5.8341 18 1 8.9313 5.0136 6.2172 19 6 11.0094 5.1147 6.6948 20 7 10.8172 4.9274 7.9822 21 14 12.7412 5.3412 6.0322 22 1 13.0899 6.7845 6.0414 23 1 13.6995 4.5948 6.8865 24 1 12.8107 4.8239 4.6419 25 6 9.0063 5.7863 2.2690 26 6 7.6285 5.8373 1.6046 27 6 4.1706 0.8072 -1.0983 28 8 4.9246 1.4405 -1.7986 29 8 3.8725 -0.4636 -1.4108 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5491 2.1253 -1.3968 37 1 1.9984 3.1543 -1.3071 38 1 3.5140 3.5535 -0.1118 39 1 5.8291 4.9295 -0.0163 40 1 4.9887 5.0843 1.5451 41 1 6.2209 4.7727 3.6042 42 1 6.4055 3.0781 3.0907 43 1 8.8634 3.2952 3.2114 44 1 8.1255 3.7212 4.7746 45 1 10.7829 4.5601 3.9658 46 1 10.6426 6.3190 4.2002 47 1 11.5746 4.9071 8.5878 48 1 9.6431 5.0831 1.7321 49 1 9.4586 6.7777 2.2452 50 1 7.7385 6.1347 0.5617 51 1 7.0005 6.5606 2.1249 52 1 4.2851 -0.8287 -2.2055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833640213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:38 Heat of formation + Delta-G solvation = -112.513493 kcal Electronic energy + Delta-G solvation = -30858.292904 eV Core-core repulsion = 26665.025783 eV Total energy + Delta-G solvation = -4193.267121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22458 -39.77487 -38.38352 -37.33184 -36.46069 -34.96863 -34.19205 -32.39698 -30.71250 -30.40876 -29.41237 -28.21014 -26.67919 -24.61133 -23.99638 -23.10795 -22.42780 -21.01590 -20.62135 -20.34971 -19.19432 -18.33699 -17.70083 -17.04196 -16.70281 -16.37248 -16.21619 -15.46032 -15.38263 -15.11548 -14.62714 -14.48187 -14.34256 -14.28626 -14.11185 -13.82502 -13.53075 -13.46950 -13.26981 -12.88820 -12.62059 -12.45384 -12.30563 -12.24601 -12.04669 -11.91414 -11.76447 -11.44290 -11.37745 -11.22044 -11.00365 -10.94077 -10.89242 -10.75364 -10.57647 -10.41917 -10.11837 -9.83568 -9.74545 -9.47850 -9.21096 -8.52118 -8.14746 -7.29320 -6.00743 -3.97620 1.90402 2.21931 2.61463 2.99917 3.32469 3.39722 3.43322 3.99404 4.07089 4.28344 4.35246 4.46733 4.57189 4.75519 4.82106 4.85601 4.94044 5.04025 5.09078 5.11123 5.15217 5.17782 5.31664 5.35993 5.38105 5.45697 5.49378 5.55608 5.64305 5.71182 5.82030 5.83768 5.92107 5.94619 5.97352 6.13511 6.17507 6.20902 6.37990 6.58827 6.75994 6.90918 6.98661 7.04197 7.26100 7.28632 7.57295 7.65330 7.97487 8.05043 8.12090 8.71361 9.07418 9.61373 11.12382 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002084 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.633566 B =13433.281053 C =13716.619089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.157 4.157 6 C 0.162 3.838 7 H 0.127 0.873 8 N -0.719 5.719 9 C 0.521 3.479 10 O -0.507 6.507 11 C 0.040 3.960 12 N -0.524 5.524 13 C 0.054 3.946 14 C 0.070 3.930 15 N -0.530 5.530 16 C 0.162 3.838 17 C -0.507 4.507 18 H 0.080 0.920 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.875 3.125 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.054 3.946 26 C 0.063 3.937 27 C 0.469 3.531 28 O -0.503 6.503 29 O -0.512 6.512 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.088 0.912 43 H 0.031 0.969 44 H 0.091 0.909 45 H -0.011 1.011 46 H 0.023 0.977 47 H 0.263 0.737 48 H 0.032 0.968 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.042 0.958 52 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 -6.788 -21.830 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.112 4.112 4 H 0.114 0.886 5 C -0.214 4.214 6 C 0.054 3.946 7 H 0.145 0.855 8 N -0.374 5.374 9 C 0.308 3.692 10 O -0.380 6.380 11 C -0.091 4.091 12 N -0.249 5.249 13 C -0.073 4.073 14 C -0.059 4.059 15 N -0.255 5.255 16 C 0.036 3.964 17 C -0.545 4.545 18 H 0.098 0.902 19 C -0.134 4.134 20 N -0.541 5.541 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.192 1.192 25 C -0.075 4.075 26 C -0.065 4.065 27 C 0.309 3.691 28 O -0.390 6.390 29 O -0.324 6.324 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.106 0.894 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.007 0.993 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.060 0.940 52 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -22.629 -7.116 -21.145 31.777 hybrid contribution 1.138 0.280 -1.059 1.579 sum -21.491 -6.836 -22.203 31.648 Atomic orbital electron populations 1.21805 0.95351 1.01934 1.01858 1.21713 0.96090 0.94438 1.04161 1.21440 0.90582 0.99020 1.00167 0.88602 1.22002 1.02630 1.00384 0.96367 1.20495 0.94386 0.84564 0.95127 0.85531 1.45785 1.23397 1.06943 1.61282 1.20787 0.79684 0.92096 0.76638 1.90719 1.54458 1.46668 1.46171 1.21885 0.92890 0.92793 1.01568 1.61888 1.19858 1.26758 1.16389 1.22420 0.98467 1.00688 0.85728 1.21987 0.92931 0.90006 1.00947 1.62135 1.26274 1.26010 1.11100 1.20156 0.85639 0.95397 0.95254 1.21031 0.95622 1.48710 0.89174 0.90189 1.24900 0.98832 0.94926 0.94745 1.69894 1.31136 1.50569 1.02470 0.86856 0.85025 0.78519 0.79347 1.20203 1.21235 1.19240 1.22097 0.94864 1.00250 0.90293 1.22174 0.96118 0.88495 0.99724 1.24016 0.78606 0.79735 0.86768 1.90737 1.33718 1.63524 1.51003 1.84585 1.69013 1.29441 1.49347 0.92561 0.92460 0.92676 0.89635 0.91229 0.92597 0.91015 0.92342 0.75928 0.87892 0.91778 0.94652 0.89373 0.95099 0.89048 0.99284 0.95850 0.92720 0.94988 0.90854 0.91001 0.93964 0.73474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.67 37.16 0.36 -0.26 16 2 C -0.13 -0.63 4.88 -26.73 -0.13 -0.76 16 3 C -0.09 -0.48 2.32 -90.62 -0.21 -0.69 16 4 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.16 -0.71 8.50 37.16 0.32 -0.40 16 6 C 0.16 1.33 2.29 -69.08 -0.16 1.17 16 7 H 0.13 1.18 7.58 -51.93 -0.39 0.79 16 8 N -0.72 -6.26 4.54 -54.93 -0.25 -6.51 16 9 C 0.52 6.56 7.36 -10.98 -0.08 6.48 16 10 O -0.51 -8.60 14.00 5.56 0.08 -8.52 16 11 C 0.04 0.46 5.45 -4.97 -0.03 0.43 16 12 N -0.52 -8.19 4.45 -235.91 -1.05 -9.24 16 13 C 0.05 0.95 5.26 -3.76 -0.02 0.93 16 14 C 0.07 1.48 5.43 -3.77 -0.02 1.46 16 15 N -0.53 -11.70 4.70 -235.91 -1.11 -12.81 16 16 C 0.16 4.10 3.79 -4.98 -0.02 4.08 16 17 C -0.51 -14.77 9.03 -34.44 -0.31 -15.08 16 18 H 0.08 2.52 7.38 -52.49 -0.39 2.13 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 21 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 25 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 26 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 27 C 0.47 4.58 6.13 36.01 0.22 4.80 16 28 O -0.50 -6.75 17.08 -18.75 -0.32 -7.07 16 29 O -0.51 -3.47 10.65 -39.24 -0.42 -3.88 16 30 H 0.06 0.21 6.57 -51.93 -0.34 -0.13 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.46 5.77 -51.93 -0.30 0.16 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.32 7.07 -51.93 -0.37 -0.05 16 36 H 0.07 0.25 6.57 -51.93 -0.34 -0.09 16 37 H 0.06 0.24 6.77 -51.93 -0.35 -0.11 16 38 H 0.40 2.34 7.18 -40.82 -0.29 2.05 16 39 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 40 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.57 5.85 -51.93 -0.30 1.26 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.11 6.79 -51.93 -0.35 1.76 16 45 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 46 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 49 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 50 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 51 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.41 1.35 9.10 45.56 0.41 1.76 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -37.38 401.37 -9.14 -46.51 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.00 Total: -0.58 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.22 Total: 5.94 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.63 Total: -55.86 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.66 Total: -19.47 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.38 -9.14 -46.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833640213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.999 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds