Wall clock time and date at job start Wed Apr 1 2020 00:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47538 * 2 1 4 4 H 1.09004 * 109.46514 * 55.00207 * 3 2 1 5 5 C 1.52997 * 109.47124 * 295.00100 * 3 2 1 6 6 C 1.52998 * 109.47345 * 174.99742 * 3 2 1 7 7 H 1.09000 * 109.46861 * 305.00512 * 6 3 2 8 8 N 1.46493 * 109.47297 * 185.00161 * 6 3 2 9 9 C 1.34776 * 120.00147 * 154.99937 * 8 6 3 10 10 O 1.21278 * 120.00242 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99823 * 180.02562 * 9 8 6 12 12 N 1.46902 * 109.46902 * 180.02562 * 11 9 8 13 13 C 1.46957 * 110.99773 * 293.79981 * 12 11 9 14 14 C 1.53057 * 109.36425 * 176.81480 * 13 12 11 15 15 N 1.46950 * 109.36695 * 58.39605 * 14 13 12 16 16 C 1.46902 * 111.00141 * 176.81086 * 15 14 13 17 17 C 1.50699 * 109.47229 * 293.80454 * 16 15 14 18 18 H 1.07999 * 119.99707 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00051 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00167 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47301 * 89.99731 * 21 19 17 23 23 H 1.48511 * 109.46929 * 210.00020 * 21 19 17 24 24 H 1.48497 * 109.46821 * 329.99363 * 21 19 17 25 25 C 1.46955 * 110.88422 * 300.68850 * 15 14 13 26 26 C 1.46952 * 111.00073 * 170.00149 * 12 11 9 27 27 C 1.50706 * 109.46927 * 65.00135 * 6 3 2 28 28 O 1.20825 * 119.99859 * 119.99464 * 27 6 3 29 29 O 1.34224 * 120.00295 * 300.00423 * 27 6 3 30 30 H 1.09003 * 109.46790 * 59.99387 * 1 2 3 31 31 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46922 * 299.99994 * 1 2 3 33 33 H 1.09006 * 109.46974 * 240.00045 * 2 1 3 34 34 H 1.08999 * 109.47128 * 120.00242 * 2 1 3 35 35 H 1.08996 * 109.47226 * 300.00031 * 5 3 2 36 36 H 1.09001 * 109.46995 * 60.00080 * 5 3 2 37 37 H 1.09002 * 109.47240 * 179.97438 * 5 3 2 38 38 H 0.97006 * 120.00008 * 335.00621 * 8 6 3 39 39 H 1.09000 * 109.47635 * 300.00062 * 11 9 8 40 40 H 1.08996 * 109.47253 * 60.00289 * 11 9 8 41 41 H 1.08997 * 109.49090 * 296.77759 * 13 12 11 42 42 H 1.08995 * 109.49114 * 56.84553 * 13 12 11 43 43 H 1.09005 * 109.48453 * 298.42973 * 14 13 12 44 44 H 1.09001 * 109.48947 * 178.37458 * 14 13 12 45 45 H 1.09000 * 109.46733 * 53.80698 * 16 15 14 46 46 H 1.08998 * 109.46810 * 173.80374 * 16 15 14 47 47 H 0.96998 * 120.00531 * 180.02562 * 20 19 17 48 48 H 1.09010 * 109.48428 * 299.34728 * 25 15 14 49 49 H 1.08998 * 109.50955 * 179.29814 * 25 15 14 50 50 H 1.09001 * 109.49353 * 303.15683 * 26 12 11 51 51 H 1.09005 * 109.49268 * 63.21947 * 26 12 11 52 52 H 0.96700 * 117.00196 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.8570 0.8799 1.0113 8 7 4.0434 2.8236 0.2459 9 6 5.2191 3.0786 0.8535 10 8 5.8812 2.1661 1.3004 11 6 5.7110 4.4977 0.9775 12 7 7.0052 4.5083 1.6725 13 6 6.8576 4.0696 3.0672 14 6 8.2354 4.0185 3.7317 15 7 8.8588 5.3475 3.6638 16 6 10.1530 5.3582 4.3588 17 6 9.9326 5.1440 5.8341 18 1 8.9313 5.0136 6.2172 19 6 11.0094 5.1147 6.6948 20 7 10.8172 4.9274 7.9822 21 14 12.7412 5.3412 6.0322 22 1 13.0899 6.7845 6.0414 23 1 13.6995 4.5948 6.8865 24 1 12.8107 4.8239 4.6419 25 6 9.0063 5.7863 2.2690 26 6 7.6285 5.8373 1.6046 27 6 4.1706 0.8072 -1.0983 28 8 4.9246 1.4405 -1.7986 29 8 3.8725 -0.4636 -1.4108 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5491 2.1253 -1.3968 37 1 1.9984 3.1543 -1.3071 38 1 3.5140 3.5535 -0.1118 39 1 5.8291 4.9295 -0.0163 40 1 4.9887 5.0843 1.5451 41 1 6.2209 4.7727 3.6042 42 1 6.4055 3.0781 3.0907 43 1 8.8634 3.2952 3.2114 44 1 8.1255 3.7212 4.7746 45 1 10.7829 4.5601 3.9658 46 1 10.6426 6.3190 4.2002 47 1 11.5746 4.9071 8.5878 48 1 9.6431 5.0831 1.7321 49 1 9.4586 6.7777 2.2452 50 1 7.7385 6.1347 0.5617 51 1 7.0005 6.5606 2.1249 52 1 4.2851 -0.8287 -2.2055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833640213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:37 Heat of formation + Delta-G solvation = -143.242586 kcal Electronic energy + Delta-G solvation = -30859.625418 eV Core-core repulsion = 26665.025783 eV Total energy + Delta-G solvation = -4194.599634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98850 -40.80017 -39.66328 -37.99442 -37.20713 -36.48080 -34.94001 -34.54113 -31.84900 -31.54269 -30.62668 -29.11317 -28.00546 -25.56964 -24.98833 -24.56307 -23.22987 -22.80629 -21.47942 -20.90161 -20.66349 -19.07050 -18.97396 -18.50298 -17.84650 -17.31063 -16.98817 -16.74529 -16.39726 -16.22448 -15.87460 -15.69632 -15.51538 -15.39288 -15.14932 -14.99270 -14.85502 -14.48309 -14.33581 -14.11367 -14.00426 -13.58422 -13.13491 -12.99159 -12.92694 -12.83424 -12.75346 -12.74499 -12.52012 -12.32738 -12.20495 -12.13394 -11.94020 -11.86808 -11.75387 -11.63571 -11.57412 -11.37735 -11.33832 -10.87968 -10.78641 -10.35710 -9.32521 -9.06695 -8.29699 -6.33028 1.14843 1.32803 1.35147 1.41529 1.46008 1.80054 2.29641 2.33262 2.95254 3.02655 3.20785 3.47880 3.69005 3.83056 3.95597 3.99817 4.17970 4.18908 4.21369 4.31734 4.33801 4.37070 4.49851 4.52620 4.54241 4.60493 4.66665 4.72969 4.78289 4.80405 4.86758 4.95676 4.98817 5.02760 5.08614 5.10326 5.14050 5.15450 5.24988 5.30265 5.49244 5.50796 5.56535 5.58787 5.85884 5.99210 6.03937 6.32375 6.44958 6.63680 6.72138 6.92604 7.18900 7.30336 8.86851 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002084 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.633566 B =13433.281053 C =13716.619089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.083 4.083 4 H 0.110 0.890 5 C -0.156 4.156 6 C 0.158 3.842 7 H 0.113 0.887 8 N -0.701 5.701 9 C 0.517 3.483 10 O -0.561 6.561 11 C 0.041 3.959 12 N -0.543 5.543 13 C 0.073 3.927 14 C 0.075 3.925 15 N -0.540 5.540 16 C 0.171 3.829 17 C -0.516 4.516 18 H 0.038 0.962 19 C 0.007 3.993 20 N -0.947 5.947 21 Si 0.949 3.051 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.258 1.258 25 C 0.049 3.951 26 C 0.070 3.930 27 C 0.472 3.528 28 O -0.544 6.544 29 O -0.503 6.503 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.421 0.579 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.012 0.988 44 H 0.056 0.944 45 H -0.020 1.020 46 H 0.034 0.966 47 H 0.267 0.733 48 H 0.023 0.977 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.051 0.949 52 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.384 -5.416 -24.455 34.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.101 4.101 4 H 0.128 0.872 5 C -0.213 4.213 6 C 0.050 3.950 7 H 0.131 0.869 8 N -0.357 5.357 9 C 0.305 3.695 10 O -0.438 6.438 11 C -0.089 4.089 12 N -0.268 5.268 13 C -0.055 4.055 14 C -0.054 4.054 15 N -0.265 5.265 16 C 0.044 3.956 17 C -0.554 4.554 18 H 0.056 0.944 19 C -0.190 4.190 20 N -0.587 5.587 21 Si 0.772 3.228 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.182 1.182 25 C -0.080 4.080 26 C -0.057 4.057 27 C 0.314 3.686 28 O -0.434 6.434 29 O -0.316 6.316 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.030 0.970 44 H 0.075 0.925 45 H -0.002 1.002 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.107 0.893 50 H 0.127 0.873 51 H 0.069 0.931 52 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -23.790 -5.739 -23.822 34.153 hybrid contribution 1.347 -0.242 -0.260 1.393 sum -22.443 -5.981 -24.082 33.458 Atomic orbital electron populations 1.21787 0.94369 1.02159 1.02379 1.21703 0.96870 0.94217 1.03598 1.21431 0.88027 0.99456 1.01224 0.87177 1.22012 1.03561 1.00451 0.95242 1.20665 0.96340 0.84001 0.93975 0.86889 1.45610 1.22306 1.07848 1.59888 1.21099 0.80091 0.92156 0.76167 1.90706 1.56249 1.48122 1.48691 1.22027 0.91478 0.92547 1.02893 1.61768 1.22750 1.27521 1.14810 1.22091 0.95491 1.00741 0.87204 1.21855 0.95037 0.89374 0.99137 1.62075 1.24434 1.26133 1.13833 1.19934 0.87334 0.95264 0.93076 1.21230 0.93990 1.48627 0.91589 0.94398 1.25850 1.03802 0.94462 0.94880 1.70044 1.32803 1.51832 1.04048 0.85695 0.78808 0.79349 0.78964 1.18419 1.20630 1.18177 1.22290 0.97487 1.00467 0.87722 1.22176 0.93873 0.88194 1.01504 1.24268 0.77665 0.80123 0.86576 1.90718 1.35561 1.64590 1.52515 1.84559 1.68684 1.28152 1.50204 0.91830 0.92467 0.92316 0.90168 0.91890 0.93819 0.89516 0.91586 0.73972 0.84941 0.88840 0.94334 0.89936 0.96997 0.92510 1.00245 0.94782 0.92372 0.95912 0.89293 0.87324 0.93107 0.71644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 71.98 0.70 -0.25 16 2 C -0.13 -1.08 4.88 30.60 0.15 -0.93 16 3 C -0.08 -0.69 2.32 -10.79 -0.03 -0.72 16 4 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 5 C -0.16 -1.04 8.50 71.98 0.61 -0.43 16 6 C 0.16 2.46 2.29 44.25 0.10 2.56 16 7 H 0.11 2.13 7.58 -2.39 -0.02 2.12 16 8 N -0.70 -10.98 4.54 -446.11 -2.03 -13.01 16 9 C 0.52 12.34 7.36 87.66 0.65 12.99 16 10 O -0.56 -19.18 14.00 -3.02 -0.04 -19.22 16 11 C 0.04 0.82 5.45 85.56 0.47 1.28 16 12 N -0.54 -15.99 4.45 -900.29 -4.00 -19.99 16 13 C 0.07 2.56 5.26 86.31 0.45 3.02 16 14 C 0.07 3.30 5.43 86.31 0.47 3.77 16 15 N -0.54 -24.00 4.70 -900.28 -4.23 -28.23 16 16 C 0.17 8.74 3.79 85.56 0.32 9.06 16 17 C -0.52 -31.17 9.03 25.60 0.23 -30.94 16 18 H 0.04 2.54 7.38 -2.91 -0.02 2.52 16 19 C 0.01 0.44 5.47 84.65 0.46 0.91 16 20 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 21 Si 0.95 45.74 27.47 68.60 1.88 47.63 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 25 C 0.05 1.68 5.61 86.31 0.48 2.17 16 26 C 0.07 1.85 5.61 86.31 0.48 2.34 16 27 C 0.47 8.95 6.13 71.24 0.44 9.39 16 28 O -0.54 -14.32 17.08 21.97 0.38 -13.94 16 29 O -0.50 -6.45 10.65 -51.35 -0.55 -7.00 16 30 H 0.06 0.31 6.57 -2.39 -0.02 0.30 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.08 0.77 5.77 -2.38 -0.01 0.76 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.04 0.42 7.07 -2.39 -0.02 0.40 16 36 H 0.09 0.35 6.57 -2.39 -0.02 0.33 16 37 H 0.07 0.35 6.77 -2.39 -0.02 0.33 16 38 H 0.42 3.67 7.18 -92.70 -0.67 3.00 16 39 H 0.13 1.91 8.03 -2.39 -0.02 1.89 16 40 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 3.02 5.85 -2.39 -0.01 3.01 16 43 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.06 2.83 6.79 -2.39 -0.02 2.82 16 45 H -0.02 -1.06 7.18 -2.39 -0.02 -1.07 16 46 H 0.03 1.67 7.45 -2.39 -0.02 1.65 16 47 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 48 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 50 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 51 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 52 H 0.42 2.44 9.10 -74.06 -0.67 1.77 16 Total: -1.00 -85.00 401.37 -2.76 -87.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.46 Total: 12.18 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.99 Total: 14.20 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -9.96 Total: -121.61 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.21 Total: -40.17 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.63 kcal Total: -85.00 -2.76 -87.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833640213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.477 kcal (2) G-P(sol) polarization free energy of solvation -85.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds