Wall clock time and date at job start Wed Apr 1 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47383 * 60.00120 * 8 6 4 10 10 H 1.48498 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46971 * 299.99969 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 H 1.09005 * 109.49334 * 320.05201 * 14 12 2 16 16 C 1.53235 * 109.49441 * 80.12838 * 14 12 2 17 17 N 1.47081 * 108.52357 * 173.78757 * 16 14 12 18 18 C 1.34779 * 120.87931 * 128.79225 * 17 16 14 19 19 O 1.21507 * 119.99998 * 0.03475 * 18 17 16 20 20 O 1.34634 * 119.99622 * 180.02562 * 18 17 16 21 21 C 1.45201 * 116.99965 * 180.02562 * 20 18 17 22 22 C 1.53007 * 109.46999 * 60.00205 * 21 20 18 23 23 C 1.52999 * 109.47558 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47234 * 300.00912 * 21 20 18 25 25 C 1.47083 * 118.23709 * 308.82503 * 17 16 14 26 26 C 1.53231 * 108.52403 * 51.18021 * 25 17 16 27 27 N 1.46893 * 109.49357 * 199.99962 * 14 12 2 28 28 C 1.46902 * 111.00125 * 52.78526 * 27 14 12 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 0.96998 * 120.00151 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.63618 * 293.50199 * 16 14 12 36 36 H 1.09003 * 109.62300 * 54.08429 * 16 14 12 37 37 H 1.09001 * 109.46505 * 60.00245 * 22 21 20 38 38 H 1.08999 * 109.47293 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46911 * 300.00336 * 22 21 20 40 40 H 1.09002 * 109.47184 * 59.99830 * 23 21 20 41 41 H 1.09002 * 109.47230 * 180.02562 * 23 21 20 42 42 H 1.09006 * 109.47075 * 300.00065 * 23 21 20 43 43 H 1.08999 * 109.47474 * 59.99175 * 24 21 20 44 44 H 1.08998 * 109.47556 * 179.97438 * 24 21 20 45 45 H 1.09002 * 109.46527 * 299.99569 * 24 21 20 46 46 H 1.08999 * 109.62571 * 291.46494 * 25 17 16 47 47 H 1.08998 * 109.62824 * 170.89143 * 25 17 16 48 48 H 1.09002 * 109.49296 * 186.21139 * 26 25 17 49 49 H 1.09003 * 109.49522 * 66.13157 * 26 25 17 50 50 H 1.09006 * 109.47290 * 59.99881 * 28 27 14 51 51 H 1.08998 * 109.47218 * 179.97438 * 28 27 14 52 52 H 1.08998 * 109.47066 * 300.00452 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.5507 3.6195 -0.6731 8 14 3.4226 3.4256 -3.4338 9 1 2.1220 3.6047 -4.1277 10 1 4.1653 4.7115 -3.4338 11 1 4.2224 2.3926 -4.1400 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 1 0.5239 -2.3951 0.6579 16 6 0.9093 -2.7880 -1.4275 17 7 0.3099 -4.1311 -1.4323 18 6 -0.9156 -4.3398 -1.9531 19 8 -1.5402 -3.4118 -2.4275 20 8 -1.4475 -5.5766 -1.9477 21 6 -2.7709 -5.7275 -2.5257 22 6 -2.7375 -5.3008 -3.9947 23 6 -3.2058 -7.1912 -2.4291 24 6 -3.7642 -4.8493 -1.7622 25 6 1.0829 -5.2402 -0.8530 26 6 1.5520 -4.8280 0.5463 27 7 2.2690 -3.5486 0.4618 28 6 2.8831 -3.2032 1.7509 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 4.0262 4.4462 -0.8503 35 1 0.1651 -2.0538 -1.7361 36 1 1.7577 -2.7633 -2.1115 37 1 -2.0298 -5.9265 -4.5387 38 1 -3.7308 -5.4145 -4.4288 39 1 -2.4278 -4.2580 -4.0631 40 1 -3.2298 -7.4949 -1.3825 41 1 -4.1991 -7.3045 -2.8635 42 1 -2.4983 -7.8172 -2.9730 43 1 -3.4545 -3.8065 -1.8306 44 1 -4.7576 -4.9622 -2.1964 45 1 -3.7880 -5.1533 -0.7157 46 1 1.9479 -5.4512 -1.4818 47 1 0.4535 -6.1272 -0.7817 48 1 2.2180 -5.5925 0.9465 49 1 0.6881 -4.7182 1.2019 50 1 2.1020 -3.0445 2.4945 51 1 3.5319 -4.0172 2.0740 52 1 3.4704 -2.2916 1.6408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874174386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:35 Heat of formation + Delta-G solvation = -86.662315 kcal Electronic energy + Delta-G solvation = -32278.696327 eV Core-core repulsion = 28086.550198 eV Total energy + Delta-G solvation = -4192.146130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09056 -39.92321 -38.06173 -36.86152 -35.12550 -34.61730 -33.89056 -32.70750 -31.43467 -28.83044 -27.71953 -27.66394 -27.58854 -26.00026 -24.70522 -24.46886 -22.98086 -22.21909 -20.80820 -19.32575 -18.59301 -17.86054 -16.90705 -16.64480 -16.48889 -16.28877 -15.76028 -15.39464 -15.27081 -14.77061 -14.69831 -14.45451 -14.23637 -14.03318 -13.79925 -13.65126 -13.52102 -13.09338 -12.75898 -12.47966 -12.34167 -12.23783 -12.13637 -12.12194 -12.02914 -11.97717 -11.72368 -11.67526 -11.60936 -11.47320 -11.22378 -11.14568 -11.01236 -10.86978 -10.55737 -10.55117 -10.14548 -10.11476 -9.62962 -9.17302 -8.73404 -8.41953 -8.27183 -7.65760 -6.03283 -4.07973 1.93094 2.71959 3.27061 3.34875 3.38528 3.42410 3.56462 3.62775 4.12824 4.46483 4.47348 4.51528 4.66081 4.71392 4.84197 4.87447 5.04666 5.11343 5.19392 5.20594 5.26071 5.28861 5.31966 5.43733 5.45192 5.49716 5.55201 5.59389 5.60695 5.63078 5.68704 5.73416 5.76647 5.89743 5.95603 6.07849 6.09386 6.22795 6.24022 6.29622 6.31308 6.83598 6.98217 7.09696 7.26202 7.41542 7.51363 7.92828 8.21508 8.23179 8.35579 8.88910 9.04605 9.57144 11.04838 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.003214 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.597260 B = 8710.577425 C =10029.488369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.598 5.598 3 C 0.247 3.753 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.512 3.488 13 O -0.516 6.516 14 C 0.055 3.945 15 H 0.062 0.938 16 C 0.143 3.857 17 N -0.595 5.595 18 C 0.654 3.346 19 O -0.565 6.565 20 O -0.363 6.363 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.115 3.885 26 C 0.041 3.959 27 N -0.519 5.519 28 C 0.015 3.985 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.037 0.963 50 H 0.018 0.982 51 H 0.068 0.932 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.377 -22.327 1.159 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.296 3.704 13 O -0.392 6.392 14 C -0.058 4.058 15 H 0.079 0.921 16 C 0.021 3.979 17 N -0.336 5.336 18 C 0.409 3.591 19 O -0.454 6.454 20 O -0.278 6.278 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.197 4.197 24 C -0.241 4.241 25 C -0.007 4.007 26 C -0.088 4.088 27 N -0.244 5.244 28 C -0.132 4.132 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.055 0.945 50 H 0.037 0.963 51 H 0.086 0.914 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.523 -21.932 0.692 25.265 hybrid contribution -0.613 0.460 -0.330 0.834 sum -13.136 -21.472 0.362 25.174 Atomic orbital electron populations 1.21772 0.81389 1.03058 1.00484 1.48201 1.06209 1.07696 1.70987 1.19309 0.92483 0.77798 0.97624 1.21389 1.36629 1.06324 0.92220 0.92398 1.24924 0.95292 0.96359 0.97439 1.69920 1.38308 1.14409 1.30814 0.86558 0.78398 0.77820 0.84675 1.20202 1.21212 1.20107 1.19772 0.88032 0.84157 0.78461 1.90652 1.13307 1.86546 1.48663 1.22055 0.94611 0.91780 0.97372 0.92076 1.21707 0.98931 0.81945 0.95307 1.47023 1.14483 1.10530 1.61555 1.17919 0.81597 0.81722 0.77894 1.90910 1.60918 1.43184 1.50384 1.86272 1.34867 1.30105 1.76593 1.22064 0.78277 0.96546 0.93237 1.22520 1.02751 1.04739 0.94102 1.21852 1.01703 0.92920 1.03200 1.22519 0.98820 1.02728 1.00014 1.21874 0.96181 0.88778 0.93910 1.22542 0.97337 0.92624 0.96277 1.61655 1.31803 1.01104 1.29808 1.22631 0.98752 1.04214 0.87619 0.93778 0.90304 0.92249 0.94906 0.93765 0.92661 0.87352 0.89317 0.92207 0.91210 0.89209 0.91540 0.90200 0.91503 0.89224 0.91195 0.92273 0.90107 0.88686 0.88949 0.94475 0.96342 0.91365 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 9.90 59.84 0.59 1.87 16 2 N -0.60 -12.68 2.86 -182.96 -0.52 -13.20 16 3 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 4 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.51 10.53 6.12 -10.98 -0.07 10.46 16 13 O -0.52 -12.61 14.00 5.56 0.08 -12.53 16 14 C 0.05 0.87 1.56 -68.75 -0.11 0.76 16 15 H 0.06 0.92 7.22 -51.93 -0.37 0.54 16 16 C 0.14 2.19 5.64 -3.60 -0.02 2.17 16 17 N -0.60 -7.84 3.01 -178.26 -0.54 -8.37 16 18 C 0.65 8.94 7.75 54.06 0.42 9.36 16 19 O -0.56 -8.90 11.33 -19.28 -0.22 -9.12 16 20 O -0.36 -4.19 8.57 -40.31 -0.35 -4.54 16 21 C 0.14 1.29 1.13 -90.62 -0.10 1.19 16 22 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 23 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 24 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 25 C 0.12 1.20 6.61 -3.60 -0.02 1.18 16 26 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 27 N -0.52 -7.52 4.50 -235.98 -1.06 -8.59 16 28 C 0.02 0.22 9.07 60.07 0.55 0.76 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.89 4.73 -51.93 -0.25 0.64 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.11 1.75 5.18 -51.93 -0.27 1.48 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.82 6.98 -51.93 -0.36 0.46 16 48 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 49 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 52 H 0.10 1.75 5.52 -51.93 -0.29 1.47 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -33.41 402.34 -7.94 -41.35 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.83 Total: 0.30 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 1.72 Total: 17.51 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -1.39 Total: -56.04 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.49 Total: -26.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.41 -7.94 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874174386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.314 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds