Wall clock time and date at job start Wed Apr 1 2020 00:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47383 * 60.00120 * 8 6 4 10 10 H 1.48498 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46971 * 299.99969 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 H 1.09005 * 109.49334 * 320.05201 * 14 12 2 16 16 C 1.53235 * 109.49441 * 80.12838 * 14 12 2 17 17 N 1.47081 * 108.52357 * 173.78757 * 16 14 12 18 18 C 1.34779 * 120.87931 * 128.79225 * 17 16 14 19 19 O 1.21507 * 119.99998 * 0.03475 * 18 17 16 20 20 O 1.34634 * 119.99622 * 180.02562 * 18 17 16 21 21 C 1.45201 * 116.99965 * 180.02562 * 20 18 17 22 22 C 1.53007 * 109.46999 * 60.00205 * 21 20 18 23 23 C 1.52999 * 109.47558 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47234 * 300.00912 * 21 20 18 25 25 C 1.47083 * 118.23709 * 308.82503 * 17 16 14 26 26 C 1.53231 * 108.52403 * 51.18021 * 25 17 16 27 27 N 1.46893 * 109.49357 * 199.99962 * 14 12 2 28 28 C 1.46902 * 111.00125 * 52.78526 * 27 14 12 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 0.96998 * 120.00151 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.63618 * 293.50199 * 16 14 12 36 36 H 1.09003 * 109.62300 * 54.08429 * 16 14 12 37 37 H 1.09001 * 109.46505 * 60.00245 * 22 21 20 38 38 H 1.08999 * 109.47293 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46911 * 300.00336 * 22 21 20 40 40 H 1.09002 * 109.47184 * 59.99830 * 23 21 20 41 41 H 1.09002 * 109.47230 * 180.02562 * 23 21 20 42 42 H 1.09006 * 109.47075 * 300.00065 * 23 21 20 43 43 H 1.08999 * 109.47474 * 59.99175 * 24 21 20 44 44 H 1.08998 * 109.47556 * 179.97438 * 24 21 20 45 45 H 1.09002 * 109.46527 * 299.99569 * 24 21 20 46 46 H 1.08999 * 109.62571 * 291.46494 * 25 17 16 47 47 H 1.08998 * 109.62824 * 170.89143 * 25 17 16 48 48 H 1.09002 * 109.49296 * 186.21139 * 26 25 17 49 49 H 1.09003 * 109.49522 * 66.13157 * 26 25 17 50 50 H 1.09006 * 109.47290 * 59.99881 * 28 27 14 51 51 H 1.08998 * 109.47218 * 179.97438 * 28 27 14 52 52 H 1.08998 * 109.47066 * 300.00452 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.5507 3.6195 -0.6731 8 14 3.4226 3.4256 -3.4338 9 1 2.1220 3.6047 -4.1277 10 1 4.1653 4.7115 -3.4338 11 1 4.2224 2.3926 -4.1400 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 1 0.5239 -2.3951 0.6579 16 6 0.9093 -2.7880 -1.4275 17 7 0.3099 -4.1311 -1.4323 18 6 -0.9156 -4.3398 -1.9531 19 8 -1.5402 -3.4118 -2.4275 20 8 -1.4475 -5.5766 -1.9477 21 6 -2.7709 -5.7275 -2.5257 22 6 -2.7375 -5.3008 -3.9947 23 6 -3.2058 -7.1912 -2.4291 24 6 -3.7642 -4.8493 -1.7622 25 6 1.0829 -5.2402 -0.8530 26 6 1.5520 -4.8280 0.5463 27 7 2.2690 -3.5486 0.4618 28 6 2.8831 -3.2032 1.7509 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 4.0262 4.4462 -0.8503 35 1 0.1651 -2.0538 -1.7361 36 1 1.7577 -2.7633 -2.1115 37 1 -2.0298 -5.9265 -4.5387 38 1 -3.7308 -5.4145 -4.4288 39 1 -2.4278 -4.2580 -4.0631 40 1 -3.2298 -7.4949 -1.3825 41 1 -4.1991 -7.3045 -2.8635 42 1 -2.4983 -7.8172 -2.9730 43 1 -3.4545 -3.8065 -1.8306 44 1 -4.7576 -4.9622 -2.1964 45 1 -3.7880 -5.1533 -0.7157 46 1 1.9479 -5.4512 -1.4818 47 1 0.4535 -6.1272 -0.7817 48 1 2.2180 -5.5925 0.9465 49 1 0.6881 -4.7182 1.2019 50 1 2.1020 -3.0445 2.4945 51 1 3.5319 -4.0172 2.0740 52 1 3.4704 -2.2916 1.6408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874174386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:34 Heat of formation + Delta-G solvation = -109.876202 kcal Electronic energy + Delta-G solvation = -32279.702957 eV Core-core repulsion = 28086.550198 eV Total energy + Delta-G solvation = -4193.152759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13431 -41.24914 -39.31850 -37.90826 -36.72820 -35.81884 -34.86061 -34.68824 -32.69941 -30.07143 -29.47071 -28.32558 -28.24715 -27.54179 -26.12850 -25.65953 -24.49782 -23.38876 -21.90048 -20.26224 -20.07795 -18.96267 -18.69441 -18.11193 -17.79056 -17.39855 -17.13807 -16.69305 -16.46285 -16.21443 -15.76472 -15.54298 -15.53163 -15.35545 -15.01474 -14.74542 -14.55024 -14.39252 -14.17494 -13.69373 -13.54923 -13.35062 -13.24567 -13.17639 -13.06357 -12.96238 -12.86721 -12.82796 -12.78874 -12.70095 -12.55011 -12.43937 -12.36169 -12.27919 -12.19536 -12.08907 -11.72146 -11.36884 -11.09403 -10.65246 -10.64125 -9.98873 -9.49897 -9.33132 -8.22965 -6.37201 0.92583 1.36693 1.40582 1.47705 1.62853 1.76364 2.11826 2.39640 2.70163 2.88270 3.06940 3.49374 3.63203 3.76792 3.81243 3.83711 3.89491 3.98858 4.13713 4.15106 4.24955 4.38632 4.49087 4.55095 4.57069 4.59987 4.61607 4.65637 4.69669 4.79914 4.80888 4.88093 4.88593 4.92946 4.95731 4.98171 5.09634 5.12471 5.20545 5.23214 5.32665 5.38662 5.45440 5.53036 5.73074 5.81953 5.99466 6.04777 6.25758 6.65119 6.72428 7.20063 7.25643 7.40805 8.84092 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.003214 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.597260 B = 8710.577425 C =10029.488369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.263 3.737 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.507 3.493 13 O -0.562 6.562 14 C 0.074 3.926 15 H 0.077 0.923 16 C 0.152 3.848 17 N -0.595 5.595 18 C 0.653 3.347 19 O -0.590 6.590 20 O -0.358 6.358 21 C 0.125 3.875 22 C -0.182 4.182 23 C -0.133 4.133 24 C -0.180 4.180 25 C 0.114 3.886 26 C 0.044 3.956 27 N -0.536 5.536 28 C 0.021 3.979 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.003 0.997 34 H 0.268 0.732 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.046 0.954 50 H 0.030 0.970 51 H 0.094 0.906 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 -25.124 0.737 29.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C 0.141 3.859 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.293 3.707 13 O -0.441 6.441 14 C -0.039 4.039 15 H 0.094 0.906 16 C 0.029 3.971 17 N -0.335 5.335 18 C 0.408 3.592 19 O -0.481 6.481 20 O -0.273 6.273 21 C 0.089 3.911 22 C -0.239 4.239 23 C -0.190 4.190 24 C -0.238 4.238 25 C -0.007 4.007 26 C -0.083 4.083 27 N -0.262 5.262 28 C -0.127 4.127 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.112 0.888 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.470 -24.779 0.280 28.696 hybrid contribution -0.051 1.270 -0.175 1.283 sum -14.521 -23.509 0.105 27.632 Atomic orbital electron populations 1.21956 0.78461 1.03681 1.02462 1.48187 1.08010 1.06528 1.71080 1.18773 0.91122 0.79852 0.96108 1.21657 1.36959 1.06614 0.93000 0.92974 1.25806 0.94847 0.96384 1.01818 1.70032 1.38803 1.14836 1.32986 0.85519 0.78801 0.77448 0.79384 1.18699 1.20180 1.20276 1.20598 0.87779 0.85418 0.76906 1.90626 1.15584 1.87409 1.50468 1.21791 0.94383 0.89605 0.98121 0.90553 1.21374 0.98020 0.83328 0.94408 1.46995 1.14657 1.10180 1.61702 1.18018 0.81502 0.82139 0.77502 1.90912 1.61642 1.44202 1.51313 1.86287 1.35938 1.28507 1.76527 1.22444 0.77307 0.98595 0.92798 1.22486 1.03981 1.02674 0.94741 1.21871 1.02804 0.90354 1.03991 1.22478 0.99814 1.00828 1.00637 1.22096 0.96433 0.88546 0.93640 1.22678 0.97975 0.91034 0.96644 1.61639 1.32430 1.01961 1.30188 1.22510 0.99028 1.03270 0.87856 0.91021 0.90906 0.90397 0.95681 0.97875 0.92347 0.88418 0.91195 0.91958 0.89107 0.92371 0.90868 0.88113 0.91070 0.92219 0.89179 0.91707 0.89900 0.86199 0.86035 0.93560 0.95133 0.88768 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.54 9.90 127.77 1.27 3.81 16 2 N -0.61 -26.56 2.86 -851.16 -2.43 -29.00 16 3 C 0.26 14.34 5.16 85.63 0.44 14.78 16 4 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.62 5.46 84.66 0.46 1.08 16 7 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 8 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 9 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.51 21.57 6.12 87.66 0.54 22.10 16 13 O -0.56 -28.99 14.00 -3.03 -0.04 -29.03 16 14 C 0.07 2.32 1.56 44.25 0.07 2.39 16 15 H 0.08 2.17 7.22 -2.38 -0.02 2.15 16 16 C 0.15 4.65 5.64 86.35 0.49 5.14 16 17 N -0.59 -14.86 3.01 -948.30 -2.85 -17.71 16 18 C 0.65 17.10 7.75 129.79 1.01 18.11 16 19 O -0.59 -18.54 11.33 19.82 0.22 -18.31 16 20 O -0.36 -7.49 8.57 -55.43 -0.47 -7.96 16 21 C 0.12 2.09 1.13 -10.79 -0.01 2.08 16 22 C -0.18 -3.25 8.37 71.98 0.60 -2.64 16 23 C -0.13 -1.28 8.85 71.98 0.64 -0.64 16 24 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 25 C 0.11 2.08 6.61 86.35 0.57 2.65 16 26 C 0.04 0.81 5.62 86.38 0.49 1.29 16 27 N -0.54 -14.91 4.50 -900.51 -4.06 -18.96 16 28 C 0.02 0.57 9.07 127.69 1.16 1.73 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 31 H 0.08 2.30 4.73 -2.39 -0.01 2.28 16 32 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.00 0.20 7.42 -2.38 -0.02 0.18 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.10 3.19 5.18 -2.39 -0.01 3.18 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.12 1.63 6.98 -2.39 -0.02 1.61 16 48 H 0.12 1.57 8.06 -2.39 -0.02 1.55 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 52 H 0.06 2.05 5.52 -2.39 -0.01 2.04 16 Total: -1.00 -76.51 402.34 2.13 -74.38 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.90 Total: 17.25 kcal Atomic # 6 Polarization: 29.24 SS G_CDS: 8.55 Total: 37.79 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -9.06 Total: -121.91 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.29 Total: -55.30 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.51 2.13 -74.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874174386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.497 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds