Wall clock time and date at job start Wed Apr 1 2020 00:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47166 * 2 1 4 4 H 1.09005 * 109.47340 * 55.00363 * 3 2 1 5 5 C 1.53006 * 109.47106 * 175.00106 * 3 2 1 6 6 N 1.46897 * 109.47077 * 175.42014 * 5 3 2 7 7 C 1.47022 * 111.00058 * 199.02866 * 6 5 3 8 8 C 1.53099 * 109.25925 * 177.60904 * 7 6 5 9 9 O 1.43014 * 109.25702 * 56.84999 * 8 7 6 10 10 C 1.43024 * 113.73856 * 301.32771 * 9 8 7 11 11 C 1.47017 * 111.00235 * 75.39792 * 6 5 3 12 12 N 1.46501 * 109.47593 * 294.99819 * 3 2 1 13 13 C 1.34781 * 119.99896 * 102.96525 * 12 3 2 14 14 O 1.21583 * 119.99734 * 0.02562 * 13 12 3 15 15 N 1.34769 * 119.99951 * 180.02562 * 13 12 3 16 16 C 1.47429 * 125.65196 * 359.97438 * 15 13 12 17 17 C 1.54908 * 104.83118 * 155.91128 * 16 15 13 18 18 C 1.55151 * 101.58279 * 37.01369 * 17 16 15 19 19 O 1.42899 * 110.72162 * 83.03849 * 18 17 16 20 20 C 1.50699 * 110.71767 * 206.13611 * 18 17 16 21 21 H 1.08007 * 119.99899 * 357.55255 * 20 18 17 22 22 C 1.37881 * 120.00012 * 177.28619 * 20 18 17 23 23 N 1.31505 * 120.00122 * 0.26539 * 22 20 18 24 24 Si 1.86807 * 119.99915 * 180.27178 * 22 20 18 25 25 H 1.48504 * 109.46771 * 89.99724 * 24 22 20 26 26 H 1.48497 * 109.46779 * 209.99334 * 24 22 20 27 27 H 1.48496 * 109.47020 * 329.99945 * 24 22 20 28 28 C 1.47327 * 125.61523 * 180.20761 * 15 13 12 29 29 H 1.09000 * 109.47519 * 59.99467 * 1 2 3 30 30 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47018 * 300.00003 * 1 2 3 32 32 H 1.09005 * 109.46522 * 240.00086 * 2 1 3 33 33 H 1.08998 * 109.46997 * 119.99980 * 2 1 3 34 34 H 1.09000 * 109.47153 * 295.42256 * 5 3 2 35 35 H 1.09003 * 109.47103 * 55.42148 * 5 3 2 36 36 H 1.09003 * 109.50316 * 297.54310 * 7 6 5 37 37 H 1.08995 * 109.50425 * 57.67151 * 7 6 5 38 38 H 1.08995 * 109.50512 * 296.91441 * 8 7 6 39 39 H 1.08991 * 109.53891 * 176.80239 * 8 7 6 40 40 H 1.08994 * 109.50274 * 298.73762 * 10 9 8 41 41 H 1.09002 * 109.53997 * 178.62942 * 10 9 8 42 42 H 1.09006 * 109.50130 * 302.32474 * 11 6 5 43 43 H 1.09000 * 109.50565 * 62.40618 * 11 6 5 44 44 H 0.97004 * 120.00158 * 282.97595 * 12 3 2 45 45 H 1.09000 * 110.36230 * 37.06850 * 16 15 13 46 46 H 1.09007 * 110.36469 * 274.75247 * 16 15 13 47 47 H 1.08996 * 111.00489 * 278.93453 * 17 16 15 48 48 H 1.09001 * 110.99998 * 155.08683 * 17 16 15 49 49 H 0.96700 * 113.99836 * 182.44031 * 19 18 17 50 50 H 0.97003 * 120.00452 * 180.02562 * 23 22 20 51 51 H 1.08992 * 110.06489 * 61.67570 * 28 15 13 52 52 H 1.09003 * 109.84645 * 300.41063 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0636 2.8216 0.0157 7 6 5.4950 2.8384 -0.3197 8 6 5.9583 4.2884 -0.4830 9 8 5.6750 5.0122 0.7175 10 6 4.2898 5.0169 1.0736 11 6 3.8096 3.5743 1.2527 12 7 1.6525 2.0975 -1.2518 13 6 0.6194 2.9629 -1.2678 14 8 0.0094 3.2003 -0.2432 15 7 0.2626 3.5652 -2.4194 16 6 0.9127 3.3704 -3.7283 17 6 -0.1736 3.7392 -4.7693 18 6 -0.8868 4.9254 -4.0684 19 8 -0.1771 6.1454 -4.2917 20 6 -2.3123 5.0456 -4.5423 21 1 -2.6863 4.3774 -5.3040 22 6 -3.1406 6.0050 -3.9997 23 7 -2.6853 6.8186 -3.0723 24 14 -4.9098 6.1491 -4.5818 25 1 -5.7782 5.2819 -3.7456 26 1 -5.3570 7.5601 -4.4620 27 1 -5.0006 5.7196 -6.0004 28 6 -0.8388 4.5309 -2.5772 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.8502 1.0306 1.0930 35 1 3.9958 0.8371 -0.6704 36 1 6.0619 2.3631 0.4808 37 1 5.6567 2.2974 -1.2520 38 1 5.4296 4.7476 -1.3183 39 1 7.0309 4.3089 -0.6758 40 1 3.7126 5.4973 0.2836 41 1 4.1552 5.5639 2.0068 42 1 2.7411 3.5705 1.4681 43 1 4.3490 3.1102 2.0784 44 1 2.1394 1.9083 -2.0692 45 1 1.2171 2.3308 -3.8495 46 1 1.7730 4.0325 -3.8268 47 1 -0.8610 2.9083 -4.9277 48 1 0.2779 4.0553 -5.7097 49 1 -0.5611 6.9115 -3.8436 50 1 -3.2681 7.4934 -2.6902 51 1 -0.6524 5.4138 -1.9660 52 1 -1.7815 4.0678 -2.2858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925609678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:13 Heat of formation + Delta-G solvation = -116.743128 kcal Electronic energy + Delta-G solvation = -32362.980911 eV Core-core repulsion = 28169.530379 eV Total energy + Delta-G solvation = -4193.450532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04271 -39.36829 -37.71713 -36.45363 -34.75191 -34.17855 -32.16056 -31.91998 -31.33012 -29.93800 -29.25599 -27.69788 -26.28847 -24.85167 -24.19585 -22.83297 -22.58807 -20.79622 -20.50923 -19.63682 -19.38539 -17.43276 -17.01322 -16.67992 -16.38389 -15.95124 -15.48176 -15.24201 -15.10772 -15.00086 -14.76095 -14.26379 -14.24466 -14.17729 -13.63944 -13.33150 -13.03580 -12.96194 -12.82577 -12.67687 -12.40993 -12.07194 -11.91494 -11.66321 -11.58275 -11.53249 -11.40383 -11.25365 -11.03701 -10.97486 -10.84911 -10.70524 -10.61879 -10.59999 -10.47652 -10.12764 -9.79707 -9.46133 -9.27863 -8.68115 -8.64127 -8.49731 -8.26612 -7.65726 -6.25252 -4.33575 3.20837 3.25013 3.30766 3.33583 3.53235 3.75493 3.89061 4.29201 4.53521 4.57694 4.74338 4.80550 4.96736 5.00711 5.02853 5.08355 5.14187 5.15835 5.24498 5.37823 5.39129 5.44689 5.51061 5.52174 5.62859 5.68936 5.75899 5.81442 5.85024 5.86165 5.92366 5.99344 6.09000 6.12178 6.23493 6.45873 6.56482 6.72730 6.77910 6.78636 6.94449 6.99905 7.01612 7.07177 7.32696 7.38537 7.76114 7.77622 8.07663 8.65058 8.72460 9.28565 9.34475 9.44410 10.82504 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003289 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.767196 B = 8511.666996 C = 9494.647715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.165 3.835 4 H 0.095 0.905 5 C 0.046 3.954 6 N -0.527 5.527 7 C 0.020 3.980 8 C 0.063 3.937 9 O -0.388 6.388 10 C 0.064 3.936 11 C 0.020 3.980 12 N -0.728 5.728 13 C 0.721 3.279 14 O -0.602 6.602 15 N -0.631 5.631 16 C 0.107 3.893 17 C -0.116 4.116 18 C 0.248 3.752 19 O -0.586 6.586 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.126 3.874 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.039 0.961 44 H 0.391 0.609 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.383 0.617 50 H 0.270 0.730 51 H 0.060 0.940 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -11.164 5.550 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.058 3.942 4 H 0.113 0.887 5 C -0.083 4.083 6 N -0.252 5.252 7 C -0.108 4.108 8 C -0.014 4.014 9 O -0.307 6.307 10 C -0.013 4.013 11 C -0.108 4.108 12 N -0.383 5.383 13 C 0.424 3.576 14 O -0.481 6.481 15 N -0.368 5.368 16 C -0.016 4.016 17 C -0.154 4.154 18 C 0.207 3.793 19 O -0.395 6.395 20 C -0.576 4.576 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.533 5.533 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.224 0.776 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.234 0.766 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.072 -10.903 5.867 19.506 hybrid contribution -0.874 -0.223 0.226 0.930 sum 14.198 -11.126 6.093 19.040 Atomic orbital electron populations 1.21645 0.94802 1.00634 1.03026 1.21909 0.97302 0.96198 1.01692 1.20789 0.92138 0.92650 0.88630 0.88655 1.22518 0.95785 0.89111 1.00897 1.62092 1.15188 1.13717 1.34173 1.22786 0.88477 0.98355 1.01207 1.22639 1.00700 0.90212 0.87830 1.87959 1.25565 1.74119 1.43041 1.22658 0.81970 0.95286 1.01386 1.22817 1.02522 0.95102 0.90394 1.44808 1.34918 1.47595 1.10987 1.15431 0.80486 0.78709 0.83001 1.90852 1.57124 1.68302 1.31837 1.47980 1.35936 1.46523 1.06387 1.22163 0.96643 0.98747 0.84051 1.22718 0.96664 0.98750 0.97305 1.19486 0.89875 0.81960 0.87935 1.86087 1.57266 1.19645 1.76490 1.21520 0.95378 1.17813 1.22881 0.91632 1.25060 0.99191 0.94963 0.93984 1.69646 1.37018 1.19885 1.26752 0.86423 0.83953 0.77432 0.79217 1.20445 1.21000 1.19721 1.22847 0.86580 0.89937 1.00282 0.92399 0.93401 0.92438 0.92002 0.91569 0.93480 0.90527 0.94314 0.89762 0.92050 0.88712 0.91844 0.88498 0.89056 0.94286 0.77578 0.92886 0.92191 0.90700 0.90764 0.76558 0.92002 0.92131 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.58 37.16 0.36 -1.49 16 2 C -0.13 -1.36 5.61 -26.74 -0.15 -1.51 16 3 C 0.16 1.98 2.26 -67.93 -0.15 1.82 16 4 H 0.10 1.41 5.98 -51.93 -0.31 1.09 16 5 C 0.05 0.44 4.66 -3.82 -0.02 0.42 16 6 N -0.53 -5.82 4.39 -234.30 -1.03 -6.85 16 7 C 0.02 0.19 5.60 -3.71 -0.02 0.16 16 8 C 0.06 0.64 7.01 37.21 0.26 0.90 16 9 O -0.39 -4.85 10.83 -35.23 -0.38 -5.23 16 10 C 0.06 0.77 7.01 37.20 0.26 1.03 16 11 C 0.02 0.23 5.47 -3.71 -0.02 0.21 16 12 N -0.73 -10.38 4.28 -58.68 -0.25 -10.64 16 13 C 0.72 14.04 7.46 -86.92 -0.65 13.39 16 14 O -0.60 -13.87 16.03 5.29 0.08 -13.78 16 15 N -0.63 -12.90 3.33 -175.99 -0.59 -13.49 16 16 C 0.11 1.87 6.57 -2.53 -0.02 1.85 16 17 C -0.12 -2.30 6.23 -24.59 -0.15 -2.46 16 18 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 19 O -0.59 -14.79 13.08 -35.23 -0.46 -15.25 16 20 C -0.54 -14.08 8.11 -34.44 -0.28 -14.36 16 21 H 0.07 1.69 7.77 -52.48 -0.41 1.28 16 22 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 23 N -0.89 -23.93 10.96 55.43 0.61 -23.32 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.13 3.06 5.39 -2.90 -0.02 3.05 16 29 H 0.06 0.90 7.03 -51.93 -0.36 0.54 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 35 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.20 6.89 -51.93 -0.36 0.85 16 43 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 44 H 0.39 4.93 7.26 -40.82 -0.30 4.63 16 45 H 0.05 0.74 7.30 -51.93 -0.38 0.37 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 49 H 0.38 9.99 7.24 45.56 0.33 10.32 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 51 H 0.06 1.63 8.00 -51.93 -0.42 1.21 16 52 H 0.06 1.64 7.81 -51.93 -0.41 1.24 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -30.24 404.05 -10.19 -40.43 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -8.47 Total: 15.82 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.77 Total: 10.71 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -1.26 Total: -54.30 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.76 Total: -34.26 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.24 -10.19 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925609678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.309 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds