Wall clock time and date at job start Wed Apr 1 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47166 * 2 1 4 4 H 1.09005 * 109.47340 * 55.00363 * 3 2 1 5 5 C 1.53006 * 109.47106 * 175.00106 * 3 2 1 6 6 N 1.46897 * 109.47077 * 175.42014 * 5 3 2 7 7 C 1.47022 * 111.00058 * 199.02866 * 6 5 3 8 8 C 1.53099 * 109.25925 * 177.60904 * 7 6 5 9 9 O 1.43014 * 109.25702 * 56.84999 * 8 7 6 10 10 C 1.43024 * 113.73856 * 301.32771 * 9 8 7 11 11 C 1.47017 * 111.00235 * 75.39792 * 6 5 3 12 12 N 1.46501 * 109.47593 * 294.99819 * 3 2 1 13 13 C 1.34781 * 119.99896 * 102.96525 * 12 3 2 14 14 O 1.21583 * 119.99734 * 0.02562 * 13 12 3 15 15 N 1.34769 * 119.99951 * 180.02562 * 13 12 3 16 16 C 1.47429 * 125.65196 * 359.97438 * 15 13 12 17 17 C 1.54908 * 104.83118 * 155.91128 * 16 15 13 18 18 C 1.55151 * 101.58279 * 37.01369 * 17 16 15 19 19 O 1.42899 * 110.72162 * 83.03849 * 18 17 16 20 20 C 1.50699 * 110.71767 * 206.13611 * 18 17 16 21 21 H 1.08007 * 119.99899 * 357.55255 * 20 18 17 22 22 C 1.37881 * 120.00012 * 177.28619 * 20 18 17 23 23 N 1.31505 * 120.00122 * 0.26539 * 22 20 18 24 24 Si 1.86807 * 119.99915 * 180.27178 * 22 20 18 25 25 H 1.48504 * 109.46771 * 89.99724 * 24 22 20 26 26 H 1.48497 * 109.46779 * 209.99334 * 24 22 20 27 27 H 1.48496 * 109.47020 * 329.99945 * 24 22 20 28 28 C 1.47327 * 125.61523 * 180.20761 * 15 13 12 29 29 H 1.09000 * 109.47519 * 59.99467 * 1 2 3 30 30 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47018 * 300.00003 * 1 2 3 32 32 H 1.09005 * 109.46522 * 240.00086 * 2 1 3 33 33 H 1.08998 * 109.46997 * 119.99980 * 2 1 3 34 34 H 1.09000 * 109.47153 * 295.42256 * 5 3 2 35 35 H 1.09003 * 109.47103 * 55.42148 * 5 3 2 36 36 H 1.09003 * 109.50316 * 297.54310 * 7 6 5 37 37 H 1.08995 * 109.50425 * 57.67151 * 7 6 5 38 38 H 1.08995 * 109.50512 * 296.91441 * 8 7 6 39 39 H 1.08991 * 109.53891 * 176.80239 * 8 7 6 40 40 H 1.08994 * 109.50274 * 298.73762 * 10 9 8 41 41 H 1.09002 * 109.53997 * 178.62942 * 10 9 8 42 42 H 1.09006 * 109.50130 * 302.32474 * 11 6 5 43 43 H 1.09000 * 109.50565 * 62.40618 * 11 6 5 44 44 H 0.97004 * 120.00158 * 282.97595 * 12 3 2 45 45 H 1.09000 * 110.36230 * 37.06850 * 16 15 13 46 46 H 1.09007 * 110.36469 * 274.75247 * 16 15 13 47 47 H 1.08996 * 111.00489 * 278.93453 * 17 16 15 48 48 H 1.09001 * 110.99998 * 155.08683 * 17 16 15 49 49 H 0.96700 * 113.99836 * 182.44031 * 19 18 17 50 50 H 0.97003 * 120.00452 * 180.02562 * 23 22 20 51 51 H 1.08992 * 110.06489 * 61.67570 * 28 15 13 52 52 H 1.09003 * 109.84645 * 300.41063 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0636 2.8216 0.0157 7 6 5.4950 2.8384 -0.3197 8 6 5.9583 4.2884 -0.4830 9 8 5.6750 5.0122 0.7175 10 6 4.2898 5.0169 1.0736 11 6 3.8096 3.5743 1.2527 12 7 1.6525 2.0975 -1.2518 13 6 0.6194 2.9629 -1.2678 14 8 0.0094 3.2003 -0.2432 15 7 0.2626 3.5652 -2.4194 16 6 0.9127 3.3704 -3.7283 17 6 -0.1736 3.7392 -4.7693 18 6 -0.8868 4.9254 -4.0684 19 8 -0.1771 6.1454 -4.2917 20 6 -2.3123 5.0456 -4.5423 21 1 -2.6863 4.3774 -5.3040 22 6 -3.1406 6.0050 -3.9997 23 7 -2.6853 6.8186 -3.0723 24 14 -4.9098 6.1491 -4.5818 25 1 -5.7782 5.2819 -3.7456 26 1 -5.3570 7.5601 -4.4620 27 1 -5.0006 5.7196 -6.0004 28 6 -0.8388 4.5309 -2.5772 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.8502 1.0306 1.0930 35 1 3.9958 0.8371 -0.6704 36 1 6.0619 2.3631 0.4808 37 1 5.6567 2.2974 -1.2520 38 1 5.4296 4.7476 -1.3183 39 1 7.0309 4.3089 -0.6758 40 1 3.7126 5.4973 0.2836 41 1 4.1552 5.5639 2.0068 42 1 2.7411 3.5705 1.4681 43 1 4.3490 3.1102 2.0784 44 1 2.1394 1.9083 -2.0692 45 1 1.2171 2.3308 -3.8495 46 1 1.7730 4.0325 -3.8268 47 1 -0.8610 2.9083 -4.9277 48 1 0.2779 4.0553 -5.7097 49 1 -0.5611 6.9115 -3.8436 50 1 -3.2681 7.4934 -2.6902 51 1 -0.6524 5.4138 -1.9660 52 1 -1.7815 4.0678 -2.2858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925609678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:12 Heat of formation + Delta-G solvation = -140.676509 kcal Electronic energy + Delta-G solvation = -32364.018740 eV Core-core repulsion = 28169.530379 eV Total energy + Delta-G solvation = -4194.488361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33187 -40.49043 -39.26234 -37.68845 -36.00639 -35.76228 -34.19346 -33.19626 -32.16841 -31.45850 -30.32333 -29.47432 -27.41707 -26.61266 -25.04940 -24.25662 -23.63806 -21.86608 -21.42830 -21.29007 -20.94289 -19.18446 -18.74310 -17.61871 -17.42164 -17.19208 -16.97403 -16.68403 -16.23640 -16.07205 -16.00874 -15.68448 -15.59327 -15.26170 -14.79330 -14.74993 -14.73352 -14.33374 -14.21935 -13.85586 -13.60271 -13.48501 -13.28304 -13.22992 -12.84883 -12.79620 -12.52510 -12.49658 -12.38906 -12.30353 -12.28015 -12.25934 -12.07169 -11.89859 -11.70100 -11.51724 -11.17655 -11.07945 -10.71232 -10.64103 -10.27029 -9.99781 -9.35515 -9.25163 -8.25656 -6.41549 1.40920 1.42735 1.52644 1.80862 2.34483 2.38311 2.69969 2.91372 3.01186 3.22000 3.70628 3.83943 3.90900 3.98396 4.09655 4.11693 4.16081 4.19316 4.23022 4.24364 4.33284 4.41753 4.44334 4.57426 4.61074 4.62906 4.66256 4.70410 4.75692 4.77076 4.85374 4.89721 4.98366 5.02477 5.05226 5.07008 5.15994 5.18600 5.30979 5.39370 5.42418 5.53123 5.72773 5.76674 5.96887 6.04367 6.05728 6.13621 6.31921 6.65363 7.23146 7.29576 7.37233 7.76733 8.80475 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003289 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.767196 B = 8511.666996 C = 9494.647715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.162 3.838 4 H 0.061 0.939 5 C 0.054 3.946 6 N -0.547 5.547 7 C 0.025 3.975 8 C 0.056 3.944 9 O -0.402 6.402 10 C 0.065 3.935 11 C 0.027 3.973 12 N -0.705 5.705 13 C 0.718 3.282 14 O -0.645 6.645 15 N -0.638 5.638 16 C 0.114 3.886 17 C -0.110 4.110 18 C 0.233 3.767 19 O -0.588 6.588 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.026 3.974 23 N -0.917 5.917 24 Si 0.962 3.038 25 H -0.280 1.280 26 H -0.281 1.281 27 H -0.264 1.264 28 C 0.147 3.853 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.404 0.596 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.375 0.625 50 H 0.270 0.730 51 H 0.021 0.979 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.521 -13.993 4.498 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.056 3.944 4 H 0.080 0.920 5 C -0.075 4.075 6 N -0.272 5.272 7 C -0.102 4.102 8 C -0.021 4.021 9 O -0.321 6.321 10 C -0.012 4.012 11 C -0.101 4.101 12 N -0.360 5.360 13 C 0.420 3.580 14 O -0.528 6.528 15 N -0.375 5.375 16 C -0.008 4.008 17 C -0.148 4.148 18 C 0.193 3.807 19 O -0.396 6.396 20 C -0.596 4.596 21 H 0.085 0.915 22 C -0.175 4.175 23 N -0.556 5.556 24 Si 0.788 3.212 25 H -0.206 1.206 26 H -0.207 1.207 27 H -0.188 1.188 28 C 0.023 3.977 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.240 0.760 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.079 0.921 51 H 0.039 0.961 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 17.355 -13.784 4.785 22.674 hybrid contribution -1.542 0.656 0.592 1.777 sum 15.813 -13.129 5.377 21.244 Atomic orbital electron populations 1.21619 0.97115 1.01003 1.00226 1.21868 0.95008 0.95066 1.04164 1.20995 0.94195 0.93061 0.86169 0.92024 1.22491 0.93298 0.88726 1.02947 1.62055 1.16773 1.14631 1.33756 1.22806 0.87129 0.97731 1.02554 1.22860 1.02080 0.90692 0.86439 1.87940 1.25209 1.74836 1.44083 1.22602 0.81858 0.95808 1.00887 1.22650 1.01055 0.95008 0.91436 1.44644 1.32930 1.45789 1.12593 1.15630 0.81250 0.79150 0.81969 1.90821 1.58828 1.69772 1.33411 1.47916 1.35413 1.46121 1.08094 1.22278 0.95512 1.01601 0.81393 1.22709 0.97133 0.96826 0.98162 1.19705 0.90026 0.82852 0.88148 1.86075 1.57372 1.19850 1.76338 1.21869 0.96727 1.17989 1.23029 0.91481 1.25816 1.02865 0.94774 0.94051 1.69760 1.38119 1.20245 1.27501 0.85485 0.79433 0.77319 0.78991 1.20555 1.20686 1.18789 1.22275 0.86422 0.89014 0.99979 0.95602 0.91372 0.94872 0.89582 0.88844 0.91747 0.87655 0.93381 0.87490 0.93508 0.86270 0.94572 0.87568 0.91478 0.93049 0.75985 0.88277 0.91737 0.89973 0.89359 0.77497 0.92103 0.96057 0.95687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.58 71.98 0.69 -2.85 16 2 C -0.12 -2.15 5.61 30.59 0.17 -1.98 16 3 C 0.16 3.60 2.26 44.99 0.10 3.70 16 4 H 0.06 1.85 5.98 -2.38 -0.01 1.83 16 5 C 0.05 0.83 4.66 86.31 0.40 1.23 16 6 N -0.55 -10.91 4.39 -895.18 -3.93 -14.85 16 7 C 0.03 0.39 5.60 86.31 0.48 0.87 16 8 C 0.06 1.03 7.01 72.02 0.50 1.53 16 9 O -0.40 -9.73 10.83 -148.98 -1.61 -11.35 16 10 C 0.07 1.62 7.01 72.01 0.50 2.12 16 11 C 0.03 0.61 5.47 86.31 0.47 1.09 16 12 N -0.70 -19.09 4.28 -457.81 -1.96 -21.06 16 13 C 0.72 28.48 7.46 179.06 1.34 29.81 16 14 O -0.65 -31.46 16.03 -3.98 -0.06 -31.52 16 15 N -0.64 -26.47 3.33 -828.98 -2.76 -29.23 16 16 C 0.11 3.75 6.57 86.85 0.57 4.33 16 17 C -0.11 -4.23 6.23 31.98 0.20 -4.03 16 18 C 0.23 11.49 0.85 -10.35 -0.01 11.48 16 19 O -0.59 -30.45 13.08 -148.98 -1.95 -32.39 16 20 C -0.56 -29.75 8.11 25.60 0.21 -29.54 16 21 H 0.07 3.47 7.77 -2.91 -0.02 3.44 16 22 C 0.03 1.37 5.27 84.66 0.45 1.82 16 23 N -0.92 -51.06 10.96 21.45 0.24 -50.82 16 24 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 C 0.15 7.55 5.39 86.67 0.47 8.02 16 29 H 0.02 0.79 7.03 -2.39 -0.02 0.77 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 0.85 8.00 -2.39 -0.02 0.83 16 35 H 0.11 1.10 7.87 -2.39 -0.02 1.08 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 1.17 8.02 -2.39 -0.02 1.15 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 1.86 6.89 -2.38 -0.02 1.84 16 43 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 44 H 0.40 8.85 7.26 -92.71 -0.67 8.18 16 45 H 0.10 2.37 7.30 -2.39 -0.02 2.36 16 46 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 48 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 49 H 0.38 20.48 7.24 -74.06 -0.54 19.94 16 50 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 51 H 0.02 1.22 8.00 -2.39 -0.02 1.20 16 52 H 0.02 1.42 7.81 -2.39 -0.02 1.40 16 Total: -1.00 -70.88 404.05 -3.77 -74.65 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.29 Total: 44.23 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 6.55 Total: 27.59 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -8.42 Total: -115.96 kcal Atomic # 8 Polarization: -71.64 SS G_CDS: -3.62 Total: -75.27 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -70.88 -3.77 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925609678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.028 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds