Wall clock time and date at job start Wed Apr 1 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.52998 * 109.46916 * 240.00311 * 2 1 3 5 5 O 1.45198 * 109.47140 * 120.00188 * 2 1 3 6 6 C 1.34636 * 116.99996 * 60.00220 * 5 2 1 7 7 O 1.21514 * 119.99998 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99958 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47618 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08992 * 110.87823 * 57.38782 * 11 10 9 13 13 C 1.55152 * 110.98857 * 293.54136 * 11 10 9 14 14 C 1.54319 * 103.02012 * 206.21906 * 13 11 10 15 15 N 1.47453 * 107.23098 * 22.28600 * 14 13 11 16 16 C 1.46893 * 110.99929 * 123.25740 * 15 14 13 17 17 C 1.50708 * 109.47146 * 69.87269 * 16 15 14 18 18 O 1.21288 * 119.99815 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99349 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00515 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99490 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00316 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00267 * 24 22 20 27 27 H 1.48504 * 109.46913 * 150.00066 * 24 22 20 28 28 C 1.47846 * 108.56762 * 0.98600 * 15 14 13 29 29 H 1.09007 * 109.47337 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47226 * 59.99398 * 1 2 3 31 31 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47355 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47549 * 300.00405 * 3 2 1 34 34 H 1.09002 * 109.46769 * 60.00429 * 3 2 1 35 35 H 1.09000 * 109.47065 * 299.99633 * 4 2 1 36 36 H 1.09000 * 109.46935 * 60.00113 * 4 2 1 37 37 H 1.09008 * 109.46946 * 180.02562 * 4 2 1 38 38 H 0.97005 * 120.00422 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.47016 * 59.99294 * 9 8 6 40 40 H 1.09008 * 109.46697 * 300.00052 * 9 8 6 41 41 H 1.08994 * 109.47178 * 59.99869 * 10 9 8 42 42 H 1.08999 * 109.47005 * 300.00052 * 10 9 8 43 43 H 1.09000 * 110.69737 * 87.83717 * 13 11 10 44 44 H 1.08993 * 110.70653 * 324.60623 * 13 11 10 45 45 H 1.08997 * 109.88656 * 262.88239 * 14 13 11 46 46 H 1.08988 * 110.02346 * 141.76550 * 14 13 11 47 47 H 1.09002 * 109.47091 * 309.87440 * 16 15 14 48 48 H 1.09000 * 109.47343 * 189.87057 * 16 15 14 49 49 H 0.96996 * 120.00564 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99781 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.37001 * 94.73357 * 28 15 14 52 52 H 1.08991 * 110.37386 * 217.07721 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6732 -4.0666 2.5835 10 6 2.2734 -4.6147 3.8798 11 6 1.8623 -6.0782 4.0532 12 1 2.1779 -6.6744 3.1971 13 6 0.3331 -6.2023 4.2836 14 6 0.2069 -7.5195 5.0777 15 7 1.5118 -7.7711 5.7165 16 6 1.3683 -7.9039 7.1724 17 6 0.6518 -9.1908 7.4913 18 8 0.2953 -9.9248 6.5939 19 7 0.4062 -9.5255 8.7735 20 6 -0.2452 -10.6965 9.0635 21 1 -0.5619 -11.3504 8.2646 22 6 -0.4979 -11.0418 10.3855 23 7 -0.1121 -10.2463 11.3577 24 14 -1.3861 -12.6369 10.7807 25 1 -2.8499 -12.3905 10.8253 26 1 -1.0855 -13.6440 9.7316 27 1 -0.9291 -13.1443 12.0994 28 6 2.4259 -6.6609 5.3733 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 2.6268 -2.2366 3.0833 39 1 2.0396 -4.6499 1.7387 40 1 0.5862 -4.1355 2.6284 41 1 1.9073 -4.0315 4.7247 42 1 3.3602 -4.5459 3.8344 43 1 -0.1952 -6.2734 3.3329 44 1 -0.0378 -5.3618 4.8700 45 1 -0.0388 -8.3381 4.4013 46 1 -0.5665 -7.4233 5.8396 47 1 0.7934 -7.0625 7.5591 48 1 2.3551 -7.9132 7.6355 49 1 0.6910 -8.9383 9.4911 50 1 -0.2889 -10.4872 12.2806 51 1 2.4148 -5.9040 6.1575 52 1 3.4379 -7.0359 5.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932703311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:44 Heat of formation + Delta-G solvation = -124.032834 kcal Electronic energy + Delta-G solvation = -29359.671754 eV Core-core repulsion = 25165.905118 eV Total energy + Delta-G solvation = -4193.766637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06937 -39.41450 -38.04787 -37.50192 -35.60530 -34.45918 -33.89145 -32.88168 -31.19845 -29.95290 -28.35500 -27.81826 -27.76017 -26.37183 -24.29328 -23.49974 -22.22864 -20.82683 -20.73683 -20.08678 -18.99348 -18.42556 -17.78303 -16.97579 -16.66688 -16.20716 -15.88706 -15.65582 -15.14524 -14.91168 -14.87178 -14.55186 -14.42798 -13.95925 -13.82895 -13.73755 -13.31214 -13.09119 -12.91748 -12.73974 -12.47950 -12.46684 -12.29757 -12.27360 -12.09951 -11.98390 -11.78066 -11.68890 -11.59046 -11.44706 -11.09129 -10.97428 -10.92367 -10.74493 -10.68649 -10.52997 -10.37311 -10.35894 -10.18755 -9.50508 -9.46585 -8.40410 -7.93092 -7.83697 -6.38644 -3.79184 1.83641 2.54214 3.19832 3.28139 3.34365 3.76545 3.95348 4.06993 4.27820 4.30956 4.31770 4.35494 4.49782 4.56474 4.77851 4.91166 4.95347 5.05937 5.13560 5.17152 5.19511 5.26991 5.28414 5.29888 5.35247 5.37426 5.44794 5.45934 5.53401 5.57912 5.61563 5.75278 5.77688 5.84571 5.85422 5.86902 5.90190 5.97465 6.05190 6.13580 6.19853 6.22915 6.33989 6.51922 7.08098 7.31147 7.32416 7.58110 8.06912 8.09989 8.65952 9.21873 9.58574 10.11000 10.79298 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.001440 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.147278 B =19445.714568 C =19474.683440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.648 3.352 7 O -0.567 6.567 8 N -0.711 5.711 9 C 0.136 3.864 10 C -0.121 4.121 11 C -0.092 4.092 12 H 0.089 0.911 13 C -0.142 4.142 14 C 0.057 3.943 15 N -0.507 5.507 16 C 0.041 3.959 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.270 1.270 27 H -0.284 1.284 28 C 0.048 3.952 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.406 0.594 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.045 0.955 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 24.319 -18.732 31.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.401 3.599 7 O -0.456 6.456 8 N -0.371 5.371 9 C 0.014 3.986 10 C -0.159 4.159 11 C -0.112 4.112 12 H 0.108 0.892 13 C -0.180 4.180 14 C -0.071 4.071 15 N -0.231 5.231 16 C -0.090 4.090 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.194 1.194 27 H -0.210 1.210 28 C -0.080 4.080 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.255 23.097 -19.773 31.041 hybrid contribution -0.364 0.560 1.454 1.600 sum 5.891 23.656 -18.319 30.494 Atomic orbital electron populations 1.22523 0.93927 1.05155 1.02532 1.22071 0.94418 0.91489 0.82053 1.21867 1.02252 0.92524 1.03179 1.22521 1.01541 1.03570 0.96475 1.86295 1.71615 1.23694 1.46560 1.18104 0.78949 0.80502 0.82329 1.90916 1.40972 1.70453 1.43282 1.44800 1.55674 1.12973 1.23615 1.21431 1.00582 0.78222 0.98337 1.21756 1.01363 0.96127 0.96631 1.22207 0.95787 0.94228 0.98973 0.89242 1.22980 0.95564 0.98562 1.00943 1.22704 0.90650 0.95768 0.97965 1.63217 1.10348 1.41099 1.08403 1.22069 1.00961 0.97179 0.88828 1.19773 0.85240 0.88362 0.83676 1.90518 1.56005 1.53476 1.45928 1.41865 1.51741 1.21286 1.05572 1.19698 1.32372 0.97839 0.92801 0.87966 1.25244 0.98118 0.99406 0.95206 1.69614 1.47285 1.37638 0.99979 0.85868 0.79232 0.81474 0.77777 1.20482 1.19424 1.20959 1.23086 0.97692 0.91966 0.95256 0.92148 0.91099 0.89328 0.91463 0.90098 0.91443 0.89340 0.91096 0.92176 0.75983 0.90960 0.90802 0.90923 0.90729 0.90736 0.91637 0.90020 0.92778 0.93428 0.89536 0.77568 0.91956 0.93700 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 2 C 0.14 1.05 1.13 -90.62 -0.10 0.95 16 3 C -0.14 -0.73 8.85 37.16 0.33 -0.40 16 4 C -0.18 -1.40 8.37 37.16 0.31 -1.08 16 5 O -0.37 -3.43 9.94 -40.31 -0.40 -3.83 16 6 C 0.65 6.72 8.06 54.05 0.44 7.16 16 7 O -0.57 -7.24 11.88 -19.28 -0.23 -7.47 16 8 N -0.71 -5.66 5.56 -65.28 -0.36 -6.02 16 9 C 0.14 1.09 5.52 -4.04 -0.02 1.06 16 10 C -0.12 -0.84 4.84 -26.73 -0.13 -0.97 16 11 C -0.09 -0.89 3.06 -88.48 -0.27 -1.16 16 12 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 13 C -0.14 -1.59 5.58 -24.90 -0.14 -1.72 16 14 C 0.06 0.90 5.65 -2.83 -0.02 0.88 16 15 N -0.51 -8.38 4.85 -232.69 -1.13 -9.51 16 16 C 0.04 0.74 5.03 -4.98 -0.03 0.72 16 17 C 0.44 10.62 7.43 -10.98 -0.08 10.54 16 18 O -0.58 -15.79 15.12 5.55 0.08 -15.70 16 19 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.05 0.57 6.15 -2.30 -0.01 0.55 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.88 5.88 -51.93 -0.31 0.58 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.41 2.32 8.58 -40.82 -0.35 1.97 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.67 7.51 -51.92 -0.39 0.28 16 41 H 0.07 0.49 8.11 -51.93 -0.42 0.06 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 44 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.05 0.94 7.31 -51.94 -0.38 0.56 16 47 H 0.05 0.78 7.96 -51.93 -0.41 0.37 16 48 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.04 0.49 7.71 -51.93 -0.40 0.09 16 52 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 414.01 15.07 6.24 6.24 Total: -1.00 -33.42 414.01 -8.94 -42.36 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -9.13 Total: 8.93 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 0.34 Total: 7.37 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.83 Total: -54.10 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.55 Total: -27.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.42 -8.94 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932703311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.669 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds