Wall clock time and date at job start Wed Apr 1 2020 00:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.52998 * 109.46916 * 240.00311 * 2 1 3 5 5 O 1.45198 * 109.47140 * 120.00188 * 2 1 3 6 6 C 1.34636 * 116.99996 * 60.00220 * 5 2 1 7 7 O 1.21514 * 119.99998 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99958 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47618 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08992 * 110.87823 * 57.38782 * 11 10 9 13 13 C 1.55152 * 110.98857 * 293.54136 * 11 10 9 14 14 C 1.54319 * 103.02012 * 206.21906 * 13 11 10 15 15 N 1.47453 * 107.23098 * 22.28600 * 14 13 11 16 16 C 1.46893 * 110.99929 * 123.25740 * 15 14 13 17 17 C 1.50708 * 109.47146 * 69.87269 * 16 15 14 18 18 O 1.21288 * 119.99815 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99349 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00515 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99490 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00316 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00267 * 24 22 20 27 27 H 1.48504 * 109.46913 * 150.00066 * 24 22 20 28 28 C 1.47846 * 108.56762 * 0.98600 * 15 14 13 29 29 H 1.09007 * 109.47337 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47226 * 59.99398 * 1 2 3 31 31 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47355 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47549 * 300.00405 * 3 2 1 34 34 H 1.09002 * 109.46769 * 60.00429 * 3 2 1 35 35 H 1.09000 * 109.47065 * 299.99633 * 4 2 1 36 36 H 1.09000 * 109.46935 * 60.00113 * 4 2 1 37 37 H 1.09008 * 109.46946 * 180.02562 * 4 2 1 38 38 H 0.97005 * 120.00422 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.47016 * 59.99294 * 9 8 6 40 40 H 1.09008 * 109.46697 * 300.00052 * 9 8 6 41 41 H 1.08994 * 109.47178 * 59.99869 * 10 9 8 42 42 H 1.08999 * 109.47005 * 300.00052 * 10 9 8 43 43 H 1.09000 * 110.69737 * 87.83717 * 13 11 10 44 44 H 1.08993 * 110.70653 * 324.60623 * 13 11 10 45 45 H 1.08997 * 109.88656 * 262.88239 * 14 13 11 46 46 H 1.08988 * 110.02346 * 141.76550 * 14 13 11 47 47 H 1.09002 * 109.47091 * 309.87440 * 16 15 14 48 48 H 1.09000 * 109.47343 * 189.87057 * 16 15 14 49 49 H 0.96996 * 120.00564 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99781 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.37001 * 94.73357 * 28 15 14 52 52 H 1.08991 * 110.37386 * 217.07721 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6732 -4.0666 2.5835 10 6 2.2734 -4.6147 3.8798 11 6 1.8623 -6.0782 4.0532 12 1 2.1779 -6.6744 3.1971 13 6 0.3331 -6.2023 4.2836 14 6 0.2069 -7.5195 5.0777 15 7 1.5118 -7.7711 5.7165 16 6 1.3683 -7.9039 7.1724 17 6 0.6518 -9.1908 7.4913 18 8 0.2953 -9.9248 6.5939 19 7 0.4062 -9.5255 8.7735 20 6 -0.2452 -10.6965 9.0635 21 1 -0.5619 -11.3504 8.2646 22 6 -0.4979 -11.0418 10.3855 23 7 -0.1121 -10.2463 11.3577 24 14 -1.3861 -12.6369 10.7807 25 1 -2.8499 -12.3905 10.8253 26 1 -1.0855 -13.6440 9.7316 27 1 -0.9291 -13.1443 12.0994 28 6 2.4259 -6.6609 5.3733 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 2.6268 -2.2366 3.0833 39 1 2.0396 -4.6499 1.7387 40 1 0.5862 -4.1355 2.6284 41 1 1.9073 -4.0315 4.7247 42 1 3.3602 -4.5459 3.8344 43 1 -0.1952 -6.2734 3.3329 44 1 -0.0378 -5.3618 4.8700 45 1 -0.0388 -8.3381 4.4013 46 1 -0.5665 -7.4233 5.8396 47 1 0.7934 -7.0625 7.5591 48 1 2.3551 -7.9132 7.6355 49 1 0.6910 -8.9383 9.4911 50 1 -0.2889 -10.4872 12.2806 51 1 2.4148 -5.9040 6.1575 52 1 3.4379 -7.0359 5.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932703311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:43 Heat of formation + Delta-G solvation = -149.032829 kcal Electronic energy + Delta-G solvation = -29360.755836 eV Core-core repulsion = 25165.905118 eV Total energy + Delta-G solvation = -4194.850718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77925 -40.70747 -39.42395 -38.47112 -36.47528 -35.90364 -35.08849 -33.88947 -33.22562 -31.02514 -29.40379 -28.35181 -28.28002 -27.83105 -25.98402 -24.33990 -22.95686 -22.07247 -21.52578 -20.99546 -20.59311 -19.81358 -19.12317 -17.69390 -17.64475 -17.41637 -17.15853 -16.64712 -16.42612 -16.06425 -15.85015 -15.61861 -15.51109 -15.40222 -15.13039 -14.63928 -14.41759 -14.28677 -13.86726 -13.56069 -13.48176 -13.33430 -13.25940 -13.09612 -12.98664 -12.88631 -12.86232 -12.84323 -12.67147 -12.41565 -12.39395 -12.31669 -12.13141 -12.04563 -11.87247 -11.56982 -11.49948 -11.44578 -11.37358 -11.10671 -10.30458 -10.19100 -9.99793 -9.14579 -8.45997 -5.94582 1.19173 1.37840 1.41284 1.54171 1.77745 2.07396 2.29231 2.85346 3.19203 3.20922 3.38336 3.61585 3.74917 3.76765 3.81431 3.93859 3.96436 4.10370 4.29224 4.33710 4.39284 4.44066 4.51985 4.54430 4.55115 4.62686 4.63940 4.73917 4.76914 4.77942 4.81512 4.86187 4.89558 4.95407 4.99764 5.05114 5.11753 5.20791 5.27091 5.28496 5.29259 5.38768 5.41244 5.45997 5.61114 5.91738 6.08530 6.20713 6.43200 6.62354 7.14181 7.36655 7.57911 8.14515 8.71476 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.001440 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.147278 B =19445.714568 C =19474.683440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.641 3.359 7 O -0.597 6.597 8 N -0.700 5.700 9 C 0.140 3.860 10 C -0.105 4.105 11 C -0.082 4.082 12 H 0.087 0.913 13 C -0.131 4.131 14 C 0.056 3.944 15 N -0.533 5.533 16 C 0.056 3.944 17 C 0.439 3.561 18 O -0.618 6.618 19 N -0.576 5.576 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.274 1.274 27 H -0.269 1.269 28 C 0.047 3.953 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.418 0.582 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.065 0.935 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.831 26.536 -18.541 33.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.488 6.488 8 N -0.360 5.360 9 C 0.017 3.983 10 C -0.143 4.143 11 C -0.101 4.101 12 H 0.105 0.895 13 C -0.169 4.169 14 C -0.072 4.072 15 N -0.258 5.258 16 C -0.076 4.076 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.194 1.194 28 C -0.080 4.080 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.127 0.873 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.436 25.359 -19.556 32.875 hybrid contribution -0.718 -0.127 1.341 1.527 sum 6.718 25.232 -18.214 31.836 Atomic orbital electron populations 1.22480 0.94189 1.03582 1.03549 1.22382 0.94422 0.92745 0.81546 1.21886 1.02496 0.90633 1.04292 1.22476 1.01688 1.02168 0.97403 1.86306 1.71575 1.23142 1.47347 1.18348 0.78812 0.80846 0.82522 1.90909 1.42316 1.71090 1.44454 1.44729 1.55249 1.12821 1.23194 1.21358 0.99984 0.78202 0.98724 1.21621 1.02522 0.93905 0.96254 1.22129 0.94127 0.96011 0.97869 0.89512 1.22902 0.97195 0.96209 1.00623 1.22594 0.90036 0.97273 0.97264 1.63119 1.11210 1.44148 1.07322 1.21910 1.01352 0.93999 0.90325 1.20894 0.84119 0.89803 0.82532 1.90486 1.57472 1.55424 1.46959 1.41933 1.52073 1.20916 1.06456 1.19648 1.34606 0.99151 0.92924 0.90542 1.26010 0.98236 1.02397 0.94523 1.69670 1.47313 1.38796 1.00375 0.84944 0.78300 0.77426 0.77751 1.19672 1.19917 1.19410 1.23204 0.96940 0.91126 0.96698 0.91967 0.89248 0.92097 0.91073 0.88134 0.91188 0.92079 0.89256 0.91825 0.74482 0.91708 0.91935 0.89676 0.88685 0.90080 0.90285 0.93090 0.95133 0.91401 0.87282 0.77035 0.91323 0.91696 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 2 C 0.13 1.78 1.13 -10.80 -0.01 1.77 16 3 C -0.14 -1.10 8.85 71.98 0.64 -0.46 16 4 C -0.18 -2.59 8.37 71.98 0.60 -1.99 16 5 O -0.37 -6.51 9.94 -55.45 -0.55 -7.06 16 6 C 0.64 12.89 8.06 129.79 1.05 13.94 16 7 O -0.60 -15.45 11.88 19.80 0.24 -15.21 16 8 N -0.70 -9.95 5.56 -590.84 -3.29 -13.23 16 9 C 0.14 1.98 5.52 86.38 0.48 2.46 16 10 C -0.10 -1.12 4.84 30.59 0.15 -0.97 16 11 C -0.08 -1.40 3.06 -9.40 -0.03 -1.42 16 12 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 13 C -0.13 -2.78 5.58 31.78 0.18 -2.60 16 14 C 0.06 1.81 5.65 86.64 0.49 2.30 16 15 N -0.53 -17.29 4.85 -890.09 -4.32 -21.61 16 16 C 0.06 1.95 5.03 85.56 0.43 2.38 16 17 C 0.44 21.48 7.43 87.66 0.65 22.14 16 18 O -0.62 -35.30 15.12 -3.05 -0.05 -35.35 16 19 N -0.58 -30.14 5.29 -306.98 -1.62 -31.77 16 20 C -0.33 -19.32 9.68 84.04 0.81 -18.50 16 21 H 0.08 4.74 7.16 -2.92 -0.02 4.72 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 24 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 C 0.05 0.99 6.15 86.77 0.53 1.53 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.27 5.88 -2.39 -0.01 1.25 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.42 3.73 8.58 -92.70 -0.80 2.94 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 1.05 7.51 -2.38 -0.02 1.04 16 41 H 0.08 0.78 8.11 -2.39 -0.02 0.76 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 44 H 0.08 1.49 8.01 -2.39 -0.02 1.47 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.03 1.09 7.31 -2.39 -0.02 1.08 16 47 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 48 H 0.11 3.33 8.07 -2.39 -0.02 3.31 16 49 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.06 1.15 7.71 -2.39 -0.02 1.13 16 52 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.44 414.01 -0.85 -76.30 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.61 Total: 33.84 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.04 Total: 18.31 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -8.94 Total: -116.36 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.36 Total: -57.62 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -75.44 -0.85 -76.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932703311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.738 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds