Wall clock time and date at job start Wed Apr 1 2020 01:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 N 1.46902 * 109.47164 * 120.00174 * 2 1 3 5 5 C 1.47015 * 110.99497 * 298.95451 * 4 2 1 6 6 C 1.53100 * 109.25308 * 177.60885 * 5 4 2 7 7 O 1.43020 * 109.25935 * 56.84848 * 6 5 4 8 8 C 1.43013 * 113.73880 * 301.32705 * 7 6 5 9 9 H 1.09001 * 109.50610 * 298.69381 * 8 7 6 10 10 C 1.50700 * 109.50983 * 178.60703 * 8 7 6 11 11 O 1.21281 * 119.99360 * 355.00196 * 10 8 7 12 12 N 1.34768 * 120.00030 * 174.72391 * 10 8 7 13 13 C 1.46504 * 119.99908 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47053 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.51450 * 59.99677 * 14 13 12 16 16 C 1.53297 * 109.51206 * 180.10429 * 14 13 12 17 17 N 1.47145 * 108.38614 * 172.22403 * 16 14 13 18 18 C 1.36937 * 120.98381 * 129.44110 * 17 16 14 19 19 H 1.08003 * 119.99851 * 206.24226 * 18 17 16 20 20 C 1.38811 * 119.99932 * 26.24002 * 18 17 16 21 21 N 1.31618 * 120.00146 * 16.90989 * 20 18 17 22 22 Si 1.86796 * 119.99794 * 196.91453 * 20 18 17 23 23 H 1.48503 * 109.47605 * 90.00170 * 22 20 18 24 24 H 1.48504 * 109.47008 * 209.99756 * 22 20 18 25 25 H 1.48503 * 109.47494 * 329.99766 * 22 20 18 26 26 C 1.47153 * 118.03482 * 309.46061 * 17 16 14 27 27 C 1.53296 * 108.38191 * 50.53713 * 26 17 16 28 28 O 1.42953 * 109.26642 * 307.71839 * 27 26 17 29 29 C 1.47007 * 110.99797 * 175.31861 * 4 2 1 30 30 H 1.08999 * 109.47449 * 60.00262 * 1 2 3 31 31 H 1.09000 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47660 * 300.00039 * 1 2 3 33 33 H 1.09000 * 109.46959 * 239.99967 * 2 1 3 34 34 H 1.09002 * 109.47440 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47025 * 300.00246 * 3 2 1 36 36 H 1.09004 * 109.46926 * 59.99695 * 3 2 1 37 37 H 1.08997 * 109.50899 * 57.67710 * 5 4 2 38 38 H 1.08999 * 109.50447 * 297.53757 * 5 4 2 39 39 H 1.08998 * 109.51043 * 296.91159 * 6 5 4 40 40 H 1.09002 * 109.54076 * 176.80342 * 6 5 4 41 41 H 0.97004 * 120.00251 * 0.02562 * 12 10 8 42 42 H 1.09006 * 109.47199 * 300.00162 * 13 12 10 43 43 H 1.08997 * 109.46778 * 60.00434 * 13 12 10 44 44 H 1.09000 * 109.67955 * 291.94860 * 16 14 13 45 45 H 1.09001 * 109.68198 * 52.49651 * 16 14 13 46 46 H 0.96993 * 119.99992 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.68348 * 170.26088 * 26 17 16 48 48 H 1.08997 * 109.68241 * 290.81186 * 26 17 16 49 49 H 1.08996 * 109.51299 * 67.62368 * 27 26 17 50 50 H 1.09008 * 109.50972 * 187.72157 * 27 26 17 51 51 H 1.09002 * 109.50836 * 62.45920 * 29 4 2 52 52 H 1.08998 * 109.51251 * 302.32390 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5688 -0.0115 2.4218 6 6 2.0498 -0.7977 3.6444 7 8 3.4730 -0.9286 3.5910 8 6 3.9467 -1.5880 2.4137 9 1 3.5457 -2.6009 2.3775 10 6 5.4525 -1.6437 2.4394 11 8 6.0647 -1.0875 3.3265 12 7 6.1184 -2.3161 1.4800 13 6 7.5823 -2.3697 1.5047 14 6 8.0828 -3.1885 0.3131 15 1 7.7523 -2.7210 -0.6144 16 6 9.6144 -3.2474 0.3395 17 7 10.0607 -4.1890 -0.6995 18 6 11.0210 -3.8327 -1.6083 19 1 11.0496 -4.3076 -2.5779 20 6 11.9575 -2.8610 -1.2835 21 7 12.1445 -2.5215 -0.0257 22 14 12.9525 -2.0351 -2.6316 23 1 12.2322 -0.8275 -3.1094 24 1 14.2799 -1.6400 -2.0957 25 1 13.1364 -2.9811 -3.7614 26 6 9.4442 -5.5247 -0.7333 27 6 7.9209 -5.3549 -0.7074 28 8 7.5584 -4.5162 0.3920 29 6 3.4849 -0.8099 1.1786 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4801 0.0415 2.4285 38 1 1.9832 0.9962 2.4510 39 1 1.5930 -1.7873 3.6436 40 1 1.7669 -0.2670 4.5535 41 1 5.6286 -2.7640 0.7726 42 1 7.9840 -1.3582 1.4445 43 1 7.9130 -2.8375 2.4320 44 1 10.0234 -2.2574 0.1379 45 1 9.9518 -3.5923 1.3169 46 1 12.7992 -1.8428 0.2013 47 1 9.7404 -6.0428 -1.6454 48 1 9.7644 -6.0990 0.1361 49 1 7.5898 -4.8961 -1.6391 50 1 7.4477 -6.3303 -0.5937 51 1 3.9299 0.1851 1.1880 52 1 3.7950 -1.3395 0.2779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035484325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:27 Heat of formation + Delta-G solvation = -89.192746 kcal Electronic energy + Delta-G solvation = -31214.020970 eV Core-core repulsion = 27021.765113 eV Total energy + Delta-G solvation = -4192.255857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.62563 -39.18942 -38.36658 -36.98558 -34.81517 -34.32993 -32.46706 -31.82240 -31.32292 -30.69541 -27.87616 -27.57802 -27.00943 -25.36072 -24.56466 -23.31953 -22.47078 -21.61243 -20.43496 -19.89340 -19.58953 -17.60755 -17.05896 -16.80721 -16.36536 -16.04215 -15.84084 -15.39721 -15.28719 -15.00018 -14.97418 -14.55504 -14.38049 -14.22744 -14.06693 -13.90193 -13.39074 -13.30484 -13.15934 -12.83595 -12.76407 -12.51377 -12.36387 -12.35120 -12.02545 -11.73575 -11.55628 -11.46434 -11.13549 -11.12232 -10.95604 -10.87472 -10.76041 -10.44143 -10.28065 -10.06118 -9.96804 -9.71213 -9.61777 -9.10784 -8.89130 -8.74306 -8.58168 -6.79336 -5.87469 -3.31513 2.62911 2.83098 3.32432 3.36511 3.39341 3.41066 3.89651 4.23167 4.38905 4.41243 4.50308 4.52747 4.71418 4.75911 4.76663 4.87297 4.93791 5.07152 5.14437 5.16832 5.20765 5.26604 5.32712 5.39277 5.43945 5.48962 5.51566 5.54326 5.59609 5.61787 5.77696 5.83089 5.87737 5.90299 5.99139 6.08977 6.21159 6.33771 6.46907 6.53224 6.58552 6.60822 6.75427 6.82848 7.03673 7.44852 7.61025 7.67961 7.80668 8.29530 8.31572 9.07614 9.70514 10.27428 11.20625 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002402 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.716111 B =11652.814792 C =11987.907829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.190 4.190 4 N -0.528 5.528 5 C 0.008 3.992 6 C 0.062 3.938 7 O -0.355 6.355 8 C 0.080 3.920 9 H 0.092 0.908 10 C 0.517 3.483 11 O -0.521 6.521 12 N -0.716 5.716 13 C 0.134 3.866 14 C 0.056 3.944 15 H 0.056 0.944 16 C 0.152 3.848 17 N -0.594 5.594 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.051 3.949 28 O -0.390 6.390 29 C 0.027 3.973 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.032 0.968 46 H 0.256 0.744 47 H 0.062 0.938 48 H 0.027 0.973 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.054 0.946 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.611 3.575 0.799 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.249 4.249 4 N -0.252 5.252 5 C -0.120 4.120 6 C -0.015 4.015 7 O -0.273 6.273 8 C 0.018 3.982 9 H 0.110 0.890 10 C 0.300 3.700 11 O -0.396 6.396 12 N -0.368 5.368 13 C 0.010 3.990 14 C -0.004 4.004 15 H 0.074 0.926 16 C 0.026 3.974 17 N -0.318 5.318 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.028 4.028 28 O -0.309 6.309 29 C -0.102 4.102 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.237 0.763 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.181 3.622 1.809 24.518 hybrid contribution 0.689 1.022 -1.459 1.910 sum -23.492 4.644 0.350 23.949 Atomic orbital electron populations 1.21864 0.93975 1.02572 1.01797 1.21745 0.95950 0.92622 0.93001 1.22504 1.01889 0.97920 1.02580 1.62490 1.09621 1.50918 1.02201 1.22924 1.01531 0.97040 0.90479 1.22749 0.81022 1.00132 0.97580 1.88138 1.21083 1.78883 1.39183 1.21932 0.92337 0.97704 0.86222 0.88999 1.19994 0.88446 0.79283 0.82259 1.90737 1.69188 1.44487 1.35151 1.45874 1.08150 1.54003 1.28818 1.21450 0.78047 1.00160 0.99311 1.23149 0.98420 0.82728 0.96089 0.92609 1.21311 0.86736 0.97341 0.92059 1.44050 1.44075 1.08095 1.35601 1.19196 1.05631 1.20380 0.93431 0.91309 1.25067 0.97045 1.01562 0.95938 1.70013 1.35888 1.33319 1.15298 0.86245 0.79297 0.79702 0.81246 1.21348 1.21625 1.20395 1.21605 0.91445 0.89034 0.99688 1.23002 0.97241 0.93586 0.88936 1.87778 1.74140 1.22950 1.46062 1.22692 0.88530 1.00685 0.98267 0.92048 0.91667 0.92554 0.89509 0.92233 0.91765 0.92218 0.89117 0.93245 0.92079 0.87988 0.76345 0.89904 0.90556 0.88565 0.95002 0.93356 0.91967 0.95522 0.93883 0.89982 0.92754 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.99 37.16 0.33 -0.49 16 2 C 0.07 0.53 2.97 -67.72 -0.20 0.33 16 3 C -0.19 -1.38 8.49 37.16 0.32 -1.06 16 4 N -0.53 -4.46 4.72 -226.34 -1.07 -5.53 16 5 C 0.01 0.06 4.86 -3.71 -0.02 0.05 16 6 C 0.06 0.56 7.01 37.21 0.26 0.82 16 7 O -0.36 -4.72 10.01 -55.06 -0.55 -5.27 16 8 C 0.08 0.95 3.22 -27.83 -0.09 0.86 16 9 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 10 C 0.52 7.87 7.18 -10.99 -0.08 7.79 16 11 O -0.52 -10.30 16.51 -14.27 -0.24 -10.53 16 12 N -0.72 -10.05 5.42 -60.29 -0.33 -10.38 16 13 C 0.13 2.25 5.37 -4.04 -0.02 2.23 16 14 C 0.06 1.03 2.86 -26.58 -0.08 0.95 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.15 3.54 4.73 -3.54 -0.02 3.52 16 17 N -0.59 -14.61 3.05 -171.83 -0.52 -15.14 16 18 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 19 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 20 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 21 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 22 Si 0.91 21.25 29.59 -169.99 -5.03 16.22 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.11 2.22 6.74 -3.53 -0.02 2.19 16 27 C 0.05 0.85 6.98 37.31 0.26 1.11 16 28 O -0.39 -7.03 10.14 -35.23 -0.36 -7.39 16 29 C 0.03 0.26 4.54 -3.71 -0.02 0.25 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.31 6.37 -51.93 -0.33 -0.03 16 33 H 0.09 0.62 8.13 -51.93 -0.42 0.19 16 34 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.43 6.44 -51.93 -0.33 0.10 16 37 H 0.09 0.56 6.21 -51.93 -0.32 0.23 16 38 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 4.72 8.25 -40.82 -0.34 4.39 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 51 H 0.05 0.61 6.55 -51.93 -0.34 0.27 16 52 H 0.09 0.79 8.04 -51.93 -0.42 0.38 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -32.65 399.55 -10.01 -42.66 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.96 Total: 2.92 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 0.40 Total: 11.52 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -1.30 Total: -56.14 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.14 Total: -23.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.65 -10.01 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.535 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds