Wall clock time and date at job start Wed Apr 1 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 N 1.46902 * 109.47164 * 120.00174 * 2 1 3 5 5 C 1.47015 * 110.99497 * 298.95451 * 4 2 1 6 6 C 1.53100 * 109.25308 * 177.60885 * 5 4 2 7 7 O 1.43020 * 109.25935 * 56.84848 * 6 5 4 8 8 C 1.43013 * 113.73880 * 301.32705 * 7 6 5 9 9 H 1.09001 * 109.50610 * 298.69381 * 8 7 6 10 10 C 1.50700 * 109.50983 * 178.60703 * 8 7 6 11 11 O 1.21281 * 119.99360 * 355.00196 * 10 8 7 12 12 N 1.34768 * 120.00030 * 174.72391 * 10 8 7 13 13 C 1.46504 * 119.99908 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47053 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.51450 * 59.99677 * 14 13 12 16 16 C 1.53297 * 109.51206 * 180.10429 * 14 13 12 17 17 N 1.47145 * 108.38614 * 172.22403 * 16 14 13 18 18 C 1.36937 * 120.98381 * 129.44110 * 17 16 14 19 19 H 1.08003 * 119.99851 * 206.24226 * 18 17 16 20 20 C 1.38811 * 119.99932 * 26.24002 * 18 17 16 21 21 N 1.31618 * 120.00146 * 16.90989 * 20 18 17 22 22 Si 1.86796 * 119.99794 * 196.91453 * 20 18 17 23 23 H 1.48503 * 109.47605 * 90.00170 * 22 20 18 24 24 H 1.48504 * 109.47008 * 209.99756 * 22 20 18 25 25 H 1.48503 * 109.47494 * 329.99766 * 22 20 18 26 26 C 1.47153 * 118.03482 * 309.46061 * 17 16 14 27 27 C 1.53296 * 108.38191 * 50.53713 * 26 17 16 28 28 O 1.42953 * 109.26642 * 307.71839 * 27 26 17 29 29 C 1.47007 * 110.99797 * 175.31861 * 4 2 1 30 30 H 1.08999 * 109.47449 * 60.00262 * 1 2 3 31 31 H 1.09000 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47660 * 300.00039 * 1 2 3 33 33 H 1.09000 * 109.46959 * 239.99967 * 2 1 3 34 34 H 1.09002 * 109.47440 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47025 * 300.00246 * 3 2 1 36 36 H 1.09004 * 109.46926 * 59.99695 * 3 2 1 37 37 H 1.08997 * 109.50899 * 57.67710 * 5 4 2 38 38 H 1.08999 * 109.50447 * 297.53757 * 5 4 2 39 39 H 1.08998 * 109.51043 * 296.91159 * 6 5 4 40 40 H 1.09002 * 109.54076 * 176.80342 * 6 5 4 41 41 H 0.97004 * 120.00251 * 0.02562 * 12 10 8 42 42 H 1.09006 * 109.47199 * 300.00162 * 13 12 10 43 43 H 1.08997 * 109.46778 * 60.00434 * 13 12 10 44 44 H 1.09000 * 109.67955 * 291.94860 * 16 14 13 45 45 H 1.09001 * 109.68198 * 52.49651 * 16 14 13 46 46 H 0.96993 * 119.99992 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.68348 * 170.26088 * 26 17 16 48 48 H 1.08997 * 109.68241 * 290.81186 * 26 17 16 49 49 H 1.08996 * 109.51299 * 67.62368 * 27 26 17 50 50 H 1.09008 * 109.50972 * 187.72157 * 27 26 17 51 51 H 1.09002 * 109.50836 * 62.45920 * 29 4 2 52 52 H 1.08998 * 109.51251 * 302.32390 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5688 -0.0115 2.4218 6 6 2.0498 -0.7977 3.6444 7 8 3.4730 -0.9286 3.5910 8 6 3.9467 -1.5880 2.4137 9 1 3.5457 -2.6009 2.3775 10 6 5.4525 -1.6437 2.4394 11 8 6.0647 -1.0875 3.3265 12 7 6.1184 -2.3161 1.4800 13 6 7.5823 -2.3697 1.5047 14 6 8.0828 -3.1885 0.3131 15 1 7.7523 -2.7210 -0.6144 16 6 9.6144 -3.2474 0.3395 17 7 10.0607 -4.1890 -0.6995 18 6 11.0210 -3.8327 -1.6083 19 1 11.0496 -4.3076 -2.5779 20 6 11.9575 -2.8610 -1.2835 21 7 12.1445 -2.5215 -0.0257 22 14 12.9525 -2.0351 -2.6316 23 1 12.2322 -0.8275 -3.1094 24 1 14.2799 -1.6400 -2.0957 25 1 13.1364 -2.9811 -3.7614 26 6 9.4442 -5.5247 -0.7333 27 6 7.9209 -5.3549 -0.7074 28 8 7.5584 -4.5162 0.3920 29 6 3.4849 -0.8099 1.1786 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4801 0.0415 2.4285 38 1 1.9832 0.9962 2.4510 39 1 1.5930 -1.7873 3.6436 40 1 1.7669 -0.2670 4.5535 41 1 5.6286 -2.7640 0.7726 42 1 7.9840 -1.3582 1.4445 43 1 7.9130 -2.8375 2.4320 44 1 10.0234 -2.2574 0.1379 45 1 9.9518 -3.5923 1.3169 46 1 12.7992 -1.8428 0.2013 47 1 9.7404 -6.0428 -1.6454 48 1 9.7644 -6.0990 0.1361 49 1 7.5898 -4.8961 -1.6391 50 1 7.4477 -6.3303 -0.5937 51 1 3.9299 0.1851 1.1880 52 1 3.7950 -1.3395 0.2779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035484325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:26 Heat of formation + Delta-G solvation = -113.511982 kcal Electronic energy + Delta-G solvation = -31215.075531 eV Core-core repulsion = 27021.765113 eV Total energy + Delta-G solvation = -4193.310419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57438 -40.41426 -39.75104 -37.77729 -36.46967 -35.87209 -33.45354 -33.19676 -32.58454 -31.98470 -29.20106 -28.36302 -28.08983 -26.80963 -25.41727 -25.03736 -23.54216 -22.88097 -21.73980 -21.14864 -20.51808 -18.97478 -18.54179 -17.88908 -17.52115 -17.20105 -16.97211 -16.70123 -16.45966 -16.10720 -15.99508 -15.83638 -15.52210 -15.37906 -15.16639 -15.09310 -15.03572 -14.57683 -14.56621 -13.93240 -13.83159 -13.73066 -13.19400 -13.11241 -13.00596 -12.94340 -12.75913 -12.68739 -12.53178 -12.36325 -12.18032 -12.09427 -12.06982 -11.88678 -11.78146 -11.58255 -11.31260 -10.93458 -10.80050 -10.71180 -10.55651 -10.20901 -9.41440 -8.76441 -7.91944 -5.39621 1.44185 1.46124 1.47319 1.56506 1.73091 2.46715 2.66135 2.76812 3.01803 3.23309 3.48991 3.61954 3.69084 3.88151 3.94247 3.96703 4.04441 4.06492 4.17117 4.23397 4.26848 4.32231 4.42837 4.45533 4.50480 4.52083 4.59054 4.65144 4.67648 4.68128 4.75453 4.82140 4.87021 4.90447 4.97365 5.00495 5.05812 5.07440 5.23060 5.27266 5.28324 5.38512 5.52480 5.59671 5.86615 5.98327 6.01218 6.25971 6.32326 6.47768 7.04671 7.13070 7.73852 8.27331 9.13894 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002402 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.716111 B =11652.814792 C =11987.907829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 C -0.187 4.187 4 N -0.526 5.526 5 C 0.011 3.989 6 C 0.057 3.943 7 O -0.390 6.390 8 C 0.088 3.912 9 H 0.113 0.887 10 C 0.516 3.484 11 O -0.573 6.573 12 N -0.700 5.700 13 C 0.144 3.856 14 C 0.079 3.921 15 H 0.068 0.932 16 C 0.158 3.842 17 N -0.614 5.614 18 C -0.264 4.264 19 H 0.075 0.925 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.266 1.266 26 C 0.101 3.899 27 C 0.057 3.943 28 O -0.389 6.389 29 C 0.033 3.967 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.418 0.582 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.067 0.933 45 H -0.001 1.001 46 H 0.251 0.749 47 H 0.073 0.927 48 H 0.014 0.986 49 H 0.056 0.944 50 H 0.122 0.878 51 H 0.037 0.963 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.530 2.894 -1.048 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.246 4.246 4 N -0.251 5.251 5 C -0.117 4.117 6 C -0.019 4.019 7 O -0.309 6.309 8 C 0.027 3.973 9 H 0.130 0.870 10 C 0.301 3.699 11 O -0.451 6.451 12 N -0.353 5.353 13 C 0.019 3.981 14 C 0.019 3.981 15 H 0.086 0.914 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.093 0.907 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.190 1.190 26 C -0.025 4.025 27 C -0.020 4.020 28 O -0.308 6.308 29 C -0.096 4.096 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.255 0.745 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.032 0.968 49 H 0.075 0.925 50 H 0.140 0.860 51 H 0.055 0.945 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.160 2.897 -0.083 27.314 hybrid contribution 1.585 1.158 -0.860 2.143 sum -25.575 4.055 -0.943 25.912 Atomic orbital electron populations 1.21829 0.92584 1.02784 1.02513 1.21836 0.96981 0.92208 0.92438 1.22476 1.00809 0.98326 1.02995 1.62538 1.08318 1.51280 1.02917 1.22945 1.02713 0.96172 0.89895 1.23004 0.78911 1.01222 0.98788 1.88094 1.23668 1.79252 1.39852 1.21879 0.89440 0.99076 0.86942 0.86964 1.20671 0.90022 0.77973 0.81187 1.90712 1.70549 1.46652 1.37197 1.45646 1.06840 1.53714 1.29105 1.21122 0.79873 0.99275 0.97812 1.22731 0.94763 0.83562 0.97051 0.91376 1.21090 0.90039 0.95522 0.90198 1.44355 1.44220 1.10029 1.35266 1.19565 1.05716 1.20069 0.94061 0.90700 1.25854 0.98545 1.02512 0.97806 1.70183 1.36796 1.33998 1.17260 0.85222 0.77281 0.78781 0.78896 1.20967 1.22453 1.19022 1.21844 0.93938 0.87017 0.99661 1.23086 0.94446 0.95337 0.89136 1.87794 1.73515 1.22576 1.46935 1.22612 0.89638 0.99610 0.97710 0.91058 0.91648 0.92175 0.89217 0.93843 0.90737 0.92420 0.86872 0.94311 0.90898 0.86585 0.74520 0.90658 0.92375 0.91489 0.98327 0.93977 0.90877 0.96777 0.92541 0.86026 0.94520 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.99 71.98 0.65 -0.55 16 2 C 0.07 0.87 2.97 44.91 0.13 1.01 16 3 C -0.19 -2.44 8.49 71.98 0.61 -1.83 16 4 N -0.53 -7.72 4.72 -869.99 -4.11 -11.83 16 5 C 0.01 0.15 4.86 86.31 0.42 0.56 16 6 C 0.06 0.92 7.01 72.02 0.50 1.42 16 7 O -0.39 -10.14 10.01 -130.02 -1.30 -11.44 16 8 C 0.09 2.00 3.22 29.88 0.10 2.10 16 9 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 10 C 0.52 15.66 7.18 87.66 0.63 16.29 16 11 O -0.57 -23.36 16.51 15.93 0.26 -23.10 16 12 N -0.70 -19.11 5.42 -463.06 -2.51 -21.61 16 13 C 0.14 4.92 5.37 86.38 0.46 5.38 16 14 C 0.08 2.86 2.86 30.69 0.09 2.95 16 15 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 16 C 0.16 7.59 4.73 86.36 0.41 8.00 16 17 N -0.61 -30.36 3.05 -697.55 -2.13 -32.49 16 18 C -0.26 -14.18 9.65 84.03 0.81 -13.37 16 19 H 0.08 3.85 7.88 -2.91 -0.02 3.82 16 20 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 21 N -0.94 -55.35 11.14 21.65 0.24 -55.11 16 22 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.10 3.99 6.74 86.35 0.58 4.58 16 27 C 0.06 1.76 6.98 72.08 0.50 2.27 16 28 O -0.39 -13.23 10.14 -148.98 -1.51 -14.74 16 29 C 0.03 0.60 4.54 86.32 0.39 1.00 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.47 6.37 -2.39 -0.02 0.46 16 33 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 34 H 0.04 0.70 6.57 -2.39 -0.02 0.69 16 35 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.77 6.44 -2.38 -0.02 0.75 16 37 H 0.11 1.06 6.21 -2.39 -0.01 1.05 16 38 H 0.04 0.63 6.43 -2.39 -0.02 0.62 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.42 8.86 8.25 -92.71 -0.77 8.09 16 42 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 47 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 48 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 51 H 0.04 0.81 6.55 -2.39 -0.02 0.79 16 52 H 0.11 1.59 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -73.05 399.55 -2.16 -75.21 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.15 Total: 21.61 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 6.71 Total: 27.37 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -8.50 Total: -121.04 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.55 Total: -49.28 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.05 -2.16 -75.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.302 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds