Wall clock time and date at job start Wed Apr 1 2020 00:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47472 * 2 1 4 4 C 1.50705 * 109.47391 * 120.00266 * 2 1 3 5 5 O 1.21283 * 119.99775 * 264.99858 * 4 2 1 6 6 N 1.34772 * 120.00059 * 84.99202 * 4 2 1 7 7 C 1.46500 * 119.99978 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.45483 * 34.98215 * 7 6 4 9 9 C 1.53034 * 109.46228 * 275.00574 * 7 6 4 10 10 C 1.53197 * 109.31345 * 178.61427 * 9 7 6 11 11 N 1.46927 * 108.77557 * 54.63366 * 10 9 7 12 12 C 1.36930 * 120.62962 * 126.11563 * 11 10 9 13 13 H 1.07998 * 120.00455 * 331.86989 * 12 11 10 14 14 C 1.38815 * 119.99816 * 151.86413 * 12 11 10 15 15 N 1.31621 * 119.99984 * 343.18964 * 14 12 11 16 16 Si 1.86800 * 120.00122 * 163.18643 * 14 12 11 17 17 H 1.48503 * 109.47174 * 60.00002 * 16 14 12 18 18 H 1.48497 * 109.47073 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47370 * 300.00248 * 16 14 12 20 20 C 1.46931 * 118.73501 * 306.39518 * 11 10 9 21 21 C 1.53038 * 109.45985 * 154.93258 * 7 6 4 22 22 H 1.09010 * 109.49601 * 61.43665 * 21 7 6 23 23 O 1.42901 * 109.50282 * 301.37756 * 21 7 6 24 24 N 1.46900 * 109.46805 * 239.99831 * 2 1 3 25 25 C 1.47014 * 111.00260 * 183.63286 * 24 2 1 26 26 C 1.53099 * 109.25911 * 177.60845 * 25 24 2 27 27 O 1.43013 * 109.25971 * 56.85227 * 26 25 24 28 28 C 1.43019 * 113.73714 * 301.33036 * 27 26 25 29 29 C 1.47022 * 110.99975 * 60.00150 * 24 2 1 30 30 H 1.09008 * 109.46576 * 300.00278 * 1 2 3 31 31 H 1.08997 * 109.47202 * 59.99326 * 1 2 3 32 32 H 1.08992 * 109.47440 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47034 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46824 * 300.00454 * 3 2 1 35 35 H 1.08999 * 109.47117 * 59.99760 * 3 2 1 36 36 H 0.97004 * 119.99956 * 0.02562 * 6 4 2 37 37 H 1.09000 * 109.50237 * 58.66135 * 9 7 6 38 38 H 1.08996 * 109.52407 * 298.57795 * 9 7 6 39 39 H 1.08998 * 109.58233 * 294.85132 * 10 9 7 40 40 H 1.08991 * 109.58610 * 174.42064 * 10 9 7 41 41 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.57915 * 173.39752 * 20 11 10 43 43 H 1.09003 * 109.58727 * 293.81523 * 20 11 10 44 44 H 0.96694 * 114.00287 * 179.97438 * 23 21 7 45 45 H 1.08997 * 109.50830 * 297.54746 * 25 24 2 46 46 H 1.09008 * 109.50379 * 57.67310 * 25 24 2 47 47 H 1.08997 * 109.50721 * 296.91595 * 26 25 24 48 48 H 1.08997 * 109.53765 * 176.80951 * 26 25 24 49 49 H 1.08998 * 109.50470 * 298.73187 * 28 27 26 50 50 H 1.08998 * 109.54041 * 178.62192 * 28 27 26 51 51 H 1.08997 * 109.50478 * 302.32537 * 29 24 2 52 52 H 1.08997 * 109.50278 * 62.41090 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3209 -0.0749 2.2223 6 7 2.1610 -2.0520 1.2287 7 6 2.6499 -2.7426 2.4246 8 1 2.2872 -2.2283 3.3146 9 6 4.1802 -2.7425 2.4236 10 6 4.6878 -3.4348 3.6925 11 7 4.0845 -4.7720 3.7752 12 6 4.8702 -5.8842 3.9190 13 1 5.8795 -5.8858 3.5346 14 6 4.3695 -7.0096 4.5591 15 7 3.2921 -6.9153 5.3093 16 14 5.2248 -8.6578 4.3558 17 1 6.6212 -8.5553 4.8505 18 1 4.4985 -9.6918 5.1359 19 1 5.2349 -9.0365 2.9199 20 6 2.6225 -4.8935 3.6943 21 6 2.1381 -4.1849 2.4255 22 1 2.5206 -4.7072 1.5485 23 8 0.7095 -4.1842 2.3947 24 7 2.0196 -0.6925 -1.1994 25 6 3.4866 -0.7880 -1.1908 26 6 3.9492 -1.5668 -2.4251 27 8 3.4556 -0.9218 -3.6022 28 6 2.0302 -0.8123 -3.6440 29 6 1.5481 -0.0259 -2.4221 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9305 -2.5603 0.4352 37 1 4.5440 -1.7153 2.3994 38 1 4.5440 -3.2781 1.5468 39 1 4.4018 -2.8503 4.5669 40 1 5.7731 -3.5257 3.6499 41 1 2.9424 -7.7017 5.7569 42 1 2.3452 -5.9469 3.6531 43 1 2.1681 -4.4280 4.5690 44 1 0.3156 -5.0673 2.3931 45 1 3.9166 0.2134 -1.2100 46 1 3.8122 -1.3074 -0.2895 47 1 3.5630 -2.5850 -2.3789 48 1 5.0385 -1.5916 -2.4533 49 1 1.5882 -1.8086 -3.6332 50 1 1.7311 -0.2911 -4.5534 51 1 0.4588 0.0110 -2.4196 52 1 1.9466 0.9880 -2.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090640117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:23 Heat of formation + Delta-G solvation = -94.340099 kcal Electronic energy + Delta-G solvation = -32806.361136 eV Core-core repulsion = 28613.882072 eV Total energy + Delta-G solvation = -4192.479063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91230 -39.24701 -38.03837 -36.49975 -35.26288 -34.35116 -32.20230 -32.12632 -31.43278 -29.49296 -28.85485 -27.57709 -26.84188 -25.45637 -24.32458 -23.05601 -22.27908 -21.55368 -20.65648 -19.73456 -18.96127 -17.73578 -16.92890 -16.60865 -16.47085 -16.03022 -15.88477 -15.33358 -15.27344 -14.94544 -14.72787 -14.57098 -14.24393 -14.14469 -13.81802 -13.55326 -13.35053 -13.07283 -12.76826 -12.57376 -12.35349 -12.21259 -12.18901 -12.09702 -11.94929 -11.68414 -11.67264 -11.52660 -11.28874 -11.21023 -10.82658 -10.80859 -10.73150 -10.41880 -10.22736 -10.02955 -9.98262 -9.78030 -9.49013 -9.29915 -8.71936 -8.67286 -8.52011 -6.78335 -5.88033 -3.32163 2.74006 3.32121 3.35362 3.39265 3.39910 3.40726 3.62881 4.39982 4.45579 4.58586 4.60694 4.65695 4.79757 4.85938 4.92810 4.97263 5.03707 5.22656 5.29037 5.35179 5.36944 5.40460 5.43229 5.44762 5.49410 5.57147 5.59125 5.60703 5.65820 5.72445 5.90656 5.92207 5.99463 6.02533 6.09849 6.25421 6.41605 6.47230 6.54259 6.59994 6.68751 6.87503 6.88713 6.90182 7.11306 7.44946 7.70544 7.82425 8.10510 8.35377 8.47097 9.10311 9.73026 10.29566 11.20381 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003154 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.066979 B = 8875.734976 C = 9537.756651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 C -0.166 4.166 4 C 0.526 3.474 5 O -0.545 6.545 6 N -0.702 5.702 7 C 0.160 3.840 8 H 0.086 0.914 9 C -0.138 4.138 10 C 0.145 3.855 11 N -0.588 5.588 12 C -0.258 4.258 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.902 5.902 16 Si 0.904 3.096 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.149 3.851 21 C 0.074 3.926 22 H 0.051 0.949 23 O -0.572 6.572 24 N -0.523 5.523 25 C 0.004 3.996 26 C 0.066 3.934 27 O -0.386 6.386 28 C 0.064 3.936 29 C 0.013 3.987 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.060 0.940 41 H 0.256 0.744 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.375 0.625 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 12.455 -16.935 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.002 4.002 3 C -0.225 4.225 4 C 0.310 3.690 5 O -0.422 6.422 6 N -0.352 5.352 7 C 0.056 3.944 8 H 0.104 0.896 9 C -0.179 4.179 10 C 0.019 3.981 11 N -0.312 5.312 12 C -0.387 4.387 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.545 5.545 16 Si 0.733 3.267 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.022 3.978 21 C 0.013 3.987 22 H 0.069 0.931 23 O -0.377 6.377 24 N -0.249 5.249 25 C -0.124 4.124 26 C -0.011 4.011 27 O -0.305 6.305 28 C -0.013 4.013 29 C -0.115 4.115 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.047 0.953 44 H 0.222 0.778 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.080 0.920 48 H 0.117 0.883 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.109 0.891 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.309 12.986 -16.230 21.453 hybrid contribution 0.336 -1.018 -0.119 1.078 sum -4.973 11.968 -16.349 20.863 Atomic orbital electron populations 1.21835 0.91349 1.03582 1.02639 1.21321 0.97259 0.92983 0.88653 1.22250 1.01918 0.95397 1.02971 1.20116 0.77475 0.82827 0.88558 1.90706 1.50387 1.66311 1.34768 1.46134 1.65505 1.06488 1.17053 1.20993 0.93813 0.91409 0.88187 0.89626 1.22410 0.93941 1.00348 1.01169 1.20931 0.96978 0.86915 0.93318 1.43971 1.01446 1.01046 1.84747 1.19157 0.97532 0.91003 1.31007 0.91455 1.25083 0.98389 0.99472 0.96528 1.70017 1.24667 1.28807 1.31057 0.86350 0.79055 0.83569 0.77684 1.20768 1.21576 1.20965 1.21411 0.84137 1.00741 0.91549 1.22953 0.79992 0.94885 1.00903 0.93136 1.86413 1.20128 1.33550 1.97579 1.62457 1.10080 1.51069 1.01307 1.23001 0.87767 1.00900 1.00693 1.22659 0.99448 0.95703 0.83255 1.87985 1.21060 1.80138 1.41291 1.22659 0.81395 1.00115 0.97128 1.22899 1.01567 0.96994 0.90069 0.91284 0.91493 0.90924 0.92082 0.91849 0.90573 0.76009 0.92048 0.92051 0.95882 0.92152 0.93425 0.88901 0.95297 0.77814 0.93275 0.88791 0.91954 0.88289 0.92125 0.88556 0.89077 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.23 37.16 0.31 -1.03 16 2 C 0.09 1.02 0.64 -132.75 -0.08 0.93 16 3 C -0.17 -1.79 7.31 37.16 0.27 -1.52 16 4 C 0.53 7.93 5.38 -10.98 -0.06 7.87 16 5 O -0.54 -10.25 15.76 5.55 0.09 -10.17 16 6 N -0.70 -10.47 3.81 -53.77 -0.20 -10.68 16 7 C 0.16 2.85 2.12 -67.89 -0.14 2.71 16 8 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 9 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 10 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 11 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16 12 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 15 N -0.90 -25.33 11.20 55.49 0.62 -24.70 16 16 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C 0.15 3.40 4.94 -3.71 -0.02 3.38 16 21 C 0.07 1.36 3.14 -26.62 -0.08 1.27 16 22 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 23 O -0.57 -9.69 13.16 -35.23 -0.46 -10.15 16 24 N -0.52 -5.15 3.83 -219.99 -0.84 -5.99 16 25 C 0.00 0.05 4.86 -3.71 -0.02 0.03 16 26 C 0.07 0.64 7.01 37.21 0.26 0.90 16 27 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16 28 C 0.06 0.51 7.01 37.21 0.26 0.77 16 29 C 0.01 0.10 4.87 -3.71 -0.02 0.08 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 34 H 0.06 0.55 6.46 -51.93 -0.34 0.22 16 35 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 36 H 0.40 5.53 7.92 -40.82 -0.32 5.20 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.38 5.10 9.08 45.56 0.41 5.52 16 45 H 0.05 0.53 6.52 -51.93 -0.34 0.20 16 46 H 0.09 1.12 6.22 -51.92 -0.32 0.80 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 0.60 6.19 -51.93 -0.32 0.28 16 52 H 0.05 0.41 6.44 -51.93 -0.33 0.07 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -31.10 391.54 -8.52 -39.62 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.96 Total: 10.50 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.27 Total: 8.88 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.94 Total: -56.12 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.76 Total: -24.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.10 -8.52 -39.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090640117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.724 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds