Wall clock time and date at job start Wed Apr 1 2020 00:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47472 * 2 1 4 4 C 1.50705 * 109.47391 * 120.00266 * 2 1 3 5 5 O 1.21283 * 119.99775 * 264.99858 * 4 2 1 6 6 N 1.34772 * 120.00059 * 84.99202 * 4 2 1 7 7 C 1.46500 * 119.99978 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.45483 * 34.98215 * 7 6 4 9 9 C 1.53034 * 109.46228 * 275.00574 * 7 6 4 10 10 C 1.53197 * 109.31345 * 178.61427 * 9 7 6 11 11 N 1.46927 * 108.77557 * 54.63366 * 10 9 7 12 12 C 1.36930 * 120.62962 * 126.11563 * 11 10 9 13 13 H 1.07998 * 120.00455 * 331.86989 * 12 11 10 14 14 C 1.38815 * 119.99816 * 151.86413 * 12 11 10 15 15 N 1.31621 * 119.99984 * 343.18964 * 14 12 11 16 16 Si 1.86800 * 120.00122 * 163.18643 * 14 12 11 17 17 H 1.48503 * 109.47174 * 60.00002 * 16 14 12 18 18 H 1.48497 * 109.47073 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47370 * 300.00248 * 16 14 12 20 20 C 1.46931 * 118.73501 * 306.39518 * 11 10 9 21 21 C 1.53038 * 109.45985 * 154.93258 * 7 6 4 22 22 H 1.09010 * 109.49601 * 61.43665 * 21 7 6 23 23 O 1.42901 * 109.50282 * 301.37756 * 21 7 6 24 24 N 1.46900 * 109.46805 * 239.99831 * 2 1 3 25 25 C 1.47014 * 111.00260 * 183.63286 * 24 2 1 26 26 C 1.53099 * 109.25911 * 177.60845 * 25 24 2 27 27 O 1.43013 * 109.25971 * 56.85227 * 26 25 24 28 28 C 1.43019 * 113.73714 * 301.33036 * 27 26 25 29 29 C 1.47022 * 110.99975 * 60.00150 * 24 2 1 30 30 H 1.09008 * 109.46576 * 300.00278 * 1 2 3 31 31 H 1.08997 * 109.47202 * 59.99326 * 1 2 3 32 32 H 1.08992 * 109.47440 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47034 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46824 * 300.00454 * 3 2 1 35 35 H 1.08999 * 109.47117 * 59.99760 * 3 2 1 36 36 H 0.97004 * 119.99956 * 0.02562 * 6 4 2 37 37 H 1.09000 * 109.50237 * 58.66135 * 9 7 6 38 38 H 1.08996 * 109.52407 * 298.57795 * 9 7 6 39 39 H 1.08998 * 109.58233 * 294.85132 * 10 9 7 40 40 H 1.08991 * 109.58610 * 174.42064 * 10 9 7 41 41 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.57915 * 173.39752 * 20 11 10 43 43 H 1.09003 * 109.58727 * 293.81523 * 20 11 10 44 44 H 0.96694 * 114.00287 * 179.97438 * 23 21 7 45 45 H 1.08997 * 109.50830 * 297.54746 * 25 24 2 46 46 H 1.09008 * 109.50379 * 57.67310 * 25 24 2 47 47 H 1.08997 * 109.50721 * 296.91595 * 26 25 24 48 48 H 1.08997 * 109.53765 * 176.80951 * 26 25 24 49 49 H 1.08998 * 109.50470 * 298.73187 * 28 27 26 50 50 H 1.08998 * 109.54041 * 178.62192 * 28 27 26 51 51 H 1.08997 * 109.50478 * 302.32537 * 29 24 2 52 52 H 1.08997 * 109.50278 * 62.41090 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3209 -0.0749 2.2223 6 7 2.1610 -2.0520 1.2287 7 6 2.6499 -2.7426 2.4246 8 1 2.2872 -2.2283 3.3146 9 6 4.1802 -2.7425 2.4236 10 6 4.6878 -3.4348 3.6925 11 7 4.0845 -4.7720 3.7752 12 6 4.8702 -5.8842 3.9190 13 1 5.8795 -5.8858 3.5346 14 6 4.3695 -7.0096 4.5591 15 7 3.2921 -6.9153 5.3093 16 14 5.2248 -8.6578 4.3558 17 1 6.6212 -8.5553 4.8505 18 1 4.4985 -9.6918 5.1359 19 1 5.2349 -9.0365 2.9199 20 6 2.6225 -4.8935 3.6943 21 6 2.1381 -4.1849 2.4255 22 1 2.5206 -4.7072 1.5485 23 8 0.7095 -4.1842 2.3947 24 7 2.0196 -0.6925 -1.1994 25 6 3.4866 -0.7880 -1.1908 26 6 3.9492 -1.5668 -2.4251 27 8 3.4556 -0.9218 -3.6022 28 6 2.0302 -0.8123 -3.6440 29 6 1.5481 -0.0259 -2.4221 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9305 -2.5603 0.4352 37 1 4.5440 -1.7153 2.3994 38 1 4.5440 -3.2781 1.5468 39 1 4.4018 -2.8503 4.5669 40 1 5.7731 -3.5257 3.6499 41 1 2.9424 -7.7017 5.7569 42 1 2.3452 -5.9469 3.6531 43 1 2.1681 -4.4280 4.5690 44 1 0.3156 -5.0673 2.3931 45 1 3.9166 0.2134 -1.2100 46 1 3.8122 -1.3074 -0.2895 47 1 3.5630 -2.5850 -2.3789 48 1 5.0385 -1.5916 -2.4533 49 1 1.5882 -1.8086 -3.6332 50 1 1.7311 -0.2911 -4.5534 51 1 0.4588 0.0110 -2.4196 52 1 1.9466 0.9880 -2.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090640117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:22 Heat of formation + Delta-G solvation = -119.118648 kcal Electronic energy + Delta-G solvation = -32807.435614 eV Core-core repulsion = 28613.882072 eV Total energy + Delta-G solvation = -4193.553542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92884 -40.35792 -39.41619 -37.44585 -36.89080 -35.84803 -33.91738 -33.00640 -32.17212 -31.19426 -30.50819 -28.40441 -27.66684 -27.09058 -25.34273 -24.29587 -23.78341 -23.00154 -21.61227 -21.23702 -20.12941 -18.96642 -18.49899 -18.11010 -17.49664 -17.16985 -16.84240 -16.69688 -16.17616 -15.97075 -15.85977 -15.60360 -15.57026 -15.38488 -15.19898 -14.96903 -14.88316 -14.49457 -13.90965 -13.78575 -13.53945 -13.47410 -13.35994 -13.18101 -13.09243 -12.97808 -12.83220 -12.62188 -12.56525 -12.47064 -12.31671 -12.10365 -12.04833 -12.02151 -11.89336 -11.42924 -11.39466 -11.00146 -10.76867 -10.61671 -10.58741 -9.99177 -9.48104 -8.76165 -7.90954 -5.38842 1.49651 1.50607 1.56173 1.58115 2.14215 2.49609 2.57437 2.97983 3.10839 3.26506 3.51373 3.62928 3.82180 3.89682 3.93074 3.97666 4.02271 4.07657 4.14319 4.28783 4.29833 4.35531 4.40473 4.44143 4.53506 4.62387 4.63729 4.67728 4.71821 4.75290 4.82721 4.85583 4.88782 4.90498 4.93916 5.02160 5.03351 5.14318 5.14728 5.23010 5.31169 5.49777 5.55207 5.63178 5.73617 5.86480 6.21151 6.32902 6.60683 6.82243 7.09696 7.26020 7.76882 8.30373 9.15656 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003154 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.066979 B = 8875.734976 C = 9537.756651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.099 3.901 3 C -0.162 4.162 4 C 0.523 3.477 5 O -0.586 6.586 6 N -0.691 5.691 7 C 0.169 3.831 8 H 0.052 0.948 9 C -0.120 4.120 10 C 0.142 3.858 11 N -0.603 5.603 12 C -0.269 4.269 13 H 0.073 0.927 14 C -0.046 4.046 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.273 1.273 20 C 0.158 3.842 21 C 0.095 3.905 22 H 0.064 0.936 23 O -0.573 6.573 24 N -0.522 5.522 25 C 0.008 3.992 26 C 0.070 3.930 27 O -0.402 6.402 28 C 0.061 3.939 29 C 0.013 3.987 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.007 0.993 40 H 0.067 0.933 41 H 0.252 0.748 42 H 0.070 0.930 43 H -0.007 1.007 44 H 0.391 0.609 45 H 0.044 0.956 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.063 0.937 50 H 0.118 0.882 51 H 0.111 0.889 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 12.732 -19.959 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.006 3.994 3 C -0.221 4.221 4 C 0.309 3.691 5 O -0.466 6.466 6 N -0.341 5.341 7 C 0.063 3.937 8 H 0.070 0.930 9 C -0.160 4.160 10 C 0.016 3.984 11 N -0.328 5.328 12 C -0.398 4.398 13 H 0.090 0.910 14 C -0.241 4.241 15 N -0.580 5.580 16 Si 0.798 3.202 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.199 1.199 20 C 0.031 3.969 21 C 0.033 3.967 22 H 0.082 0.918 23 O -0.379 6.379 24 N -0.248 5.248 25 C -0.121 4.121 26 C -0.007 4.007 27 O -0.321 6.321 28 C -0.016 4.016 29 C -0.114 4.114 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.025 0.975 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.012 0.988 44 H 0.241 0.759 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.124 0.876 49 H 0.081 0.919 50 H 0.136 0.864 51 H 0.129 0.871 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.641 13.268 -19.304 24.094 hybrid contribution 0.415 -1.049 0.856 1.416 sum -5.226 12.219 -18.448 22.736 Atomic orbital electron populations 1.21849 0.89830 1.03709 1.03735 1.21232 0.98180 0.92596 0.87374 1.22227 1.01185 0.95124 1.03583 1.20861 0.76345 0.82483 0.89381 1.90689 1.52086 1.67032 1.36750 1.45924 1.65267 1.06656 1.16214 1.20652 0.93850 0.90890 0.88283 0.92997 1.22181 0.93711 1.00366 0.99780 1.21027 0.97385 0.85633 0.94333 1.44209 1.01831 1.01782 1.84948 1.19519 0.98013 0.91810 1.30503 0.90972 1.25840 0.99237 1.02633 0.96428 1.70181 1.26270 1.29296 1.32234 0.85312 0.77887 0.79238 0.77810 1.20315 1.22161 1.19896 1.21210 0.83702 0.99505 0.92487 1.22521 0.80759 0.94718 0.98655 0.91835 1.86393 1.19057 1.35128 1.97349 1.62481 1.09675 1.51144 1.01505 1.22933 0.88193 1.00528 1.00428 1.22649 0.99960 0.95441 0.82692 1.87970 1.22572 1.80210 1.41375 1.22850 0.80177 1.00603 0.97944 1.23016 1.02732 0.96817 0.88882 0.92215 0.88427 0.91271 0.93245 0.89211 0.91917 0.74841 0.91391 0.90605 0.97536 0.91464 0.93916 0.91132 0.98849 0.75938 0.93820 0.90463 0.91856 0.87608 0.91875 0.86420 0.87068 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.23 71.98 0.59 -1.69 16 2 C 0.10 2.05 0.64 2.78 0.00 2.05 16 3 C -0.16 -3.23 7.31 71.98 0.53 -2.70 16 4 C 0.52 15.49 5.38 87.66 0.47 15.96 16 5 O -0.59 -22.38 15.76 -3.04 -0.05 -22.43 16 6 N -0.69 -20.03 3.81 -442.42 -1.68 -21.71 16 7 C 0.17 6.03 2.12 45.02 0.10 6.13 16 8 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 9 C -0.12 -4.21 5.65 30.67 0.17 -4.04 16 10 C 0.14 6.03 6.52 86.36 0.56 6.60 16 11 N -0.60 -29.72 2.99 -699.10 -2.09 -31.81 16 12 C -0.27 -14.29 9.58 84.04 0.81 -13.49 16 13 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 14 C -0.05 -2.46 4.92 84.86 0.42 -2.04 16 15 N -0.93 -53.81 11.20 21.65 0.24 -53.56 16 16 Si 0.97 43.17 29.59 68.60 2.03 45.20 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 C 0.16 7.45 4.94 86.36 0.43 7.87 16 21 C 0.09 3.47 3.14 30.67 0.10 3.56 16 22 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 23 O -0.57 -18.97 13.16 -148.98 -1.96 -20.93 16 24 N -0.52 -9.01 3.83 -849.91 -3.25 -12.26 16 25 C 0.01 0.14 4.86 86.31 0.42 0.56 16 26 C 0.07 1.20 7.01 72.02 0.50 1.70 16 27 O -0.40 -7.33 10.83 -148.98 -1.61 -8.94 16 28 C 0.06 0.76 7.01 72.01 0.50 1.27 16 29 C 0.01 0.16 4.87 86.31 0.42 0.58 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.10 1.07 6.35 -2.39 -0.02 1.05 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.10 6.54 -2.39 -0.02 1.08 16 34 H 0.09 1.30 6.46 -2.39 -0.02 1.28 16 35 H 0.06 1.42 7.87 -2.39 -0.02 1.41 16 36 H 0.41 10.56 7.92 -92.71 -0.73 9.83 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 2.71 7.93 -2.39 -0.02 2.70 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.07 3.63 6.06 -2.39 -0.01 3.62 16 43 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.39 10.25 9.08 -74.06 -0.67 9.58 16 45 H 0.04 0.89 6.52 -2.39 -0.02 0.87 16 46 H 0.08 1.75 6.22 -2.38 -0.01 1.73 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.11 0.96 6.19 -2.39 -0.01 0.95 16 52 H 0.05 0.65 6.44 -2.39 -0.02 0.64 16 Total: -1.00 -68.66 391.54 -2.83 -71.50 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.47 Total: 32.65 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 6.02 Total: 22.31 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -6.78 Total: -119.35 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -3.62 Total: -52.31 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.66 -2.83 -71.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090640117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.623 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds