Wall clock time and date at job start Wed Apr 1 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 H 1.09004 * 109.47317 * 54.30275 * 3 2 1 5 5 O 1.42894 * 109.46912 * 294.30273 * 3 2 1 6 6 C 1.42897 * 113.99994 * 99.35594 * 5 3 2 7 7 C 1.50702 * 109.46719 * 174.30424 * 3 2 1 8 8 O 1.21279 * 119.99778 * 107.78462 * 7 3 2 9 9 N 1.34778 * 120.00205 * 287.77810 * 7 3 2 10 10 C 1.48110 * 127.03331 * 184.24278 * 9 7 3 11 11 C 1.54602 * 103.42297 * 219.28819 * 10 9 7 12 12 H 1.09002 * 110.72937 * 81.23857 * 11 10 9 13 13 C 1.52997 * 110.83811 * 204.44911 * 11 10 9 14 14 N 1.46904 * 109.46827 * 288.56220 * 13 11 10 15 15 C 1.46903 * 110.99882 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46799 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00518 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99753 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99983 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00425 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00387 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46988 * 89.99808 * 23 21 19 25 25 H 1.48494 * 109.47532 * 209.99987 * 23 21 19 26 26 H 1.48505 * 109.46922 * 330.00282 * 23 21 19 27 27 C 1.54619 * 102.91244 * 322.87381 * 11 10 9 28 28 H 1.09010 * 110.32383 * 262.80703 * 27 11 10 29 29 C 1.52992 * 110.41815 * 140.63479 * 27 11 10 30 30 C 1.47485 * 127.02905 * 4.56413 * 9 7 3 31 31 H 1.09002 * 109.46620 * 185.38459 * 1 2 3 32 32 H 1.08994 * 109.47312 * 305.38482 * 1 2 3 33 33 H 1.09002 * 109.46728 * 65.38567 * 1 2 3 34 34 H 1.08991 * 109.47273 * 239.99843 * 2 1 3 35 35 H 1.09003 * 109.46685 * 119.99493 * 2 1 3 36 36 H 1.08997 * 109.47440 * 65.49956 * 6 5 3 37 37 H 1.09005 * 109.47235 * 185.49724 * 6 5 3 38 38 H 1.08999 * 109.47210 * 305.49440 * 6 5 3 39 39 H 1.08998 * 110.66526 * 337.77142 * 10 9 7 40 40 H 1.09000 * 110.66072 * 100.89705 * 10 9 7 41 41 H 1.09002 * 109.46798 * 48.56038 * 13 11 10 42 42 H 1.08997 * 109.47347 * 168.56479 * 13 11 10 43 43 H 1.00902 * 110.99694 * 56.04870 * 14 13 11 44 44 H 1.09000 * 109.46869 * 299.99910 * 15 14 13 45 45 H 1.08997 * 109.47140 * 59.99666 * 15 14 13 46 46 H 0.96999 * 120.00145 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00390 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.47132 * 302.87153 * 29 27 11 49 49 H 1.09001 * 109.47119 * 62.87012 * 29 27 11 50 50 H 1.09000 * 109.47341 * 182.87259 * 29 27 11 51 51 H 1.08997 * 109.91124 * 273.87128 * 30 9 7 52 52 H 1.09000 * 109.91910 * 34.96248 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 0.8346 5 8 1.6760 2.0764 -1.2279 6 6 0.5152 2.9044 -1.1327 7 6 3.5404 1.4448 0.1410 8 8 4.2382 1.7333 -0.8081 9 7 4.1068 1.1265 1.3218 10 6 5.5488 1.1628 1.6581 11 6 5.7456 -0.0980 2.5309 12 1 5.8502 -0.9862 1.9078 13 6 6.9571 0.0611 3.4516 14 7 8.1896 -0.0062 2.6551 15 6 9.3764 0.1438 3.5078 16 6 10.6184 0.0703 2.6575 17 8 10.5242 -0.0907 1.4590 18 7 11.8338 0.1835 3.2288 19 6 12.9638 0.1171 2.4552 20 1 12.8800 -0.0263 1.3881 21 6 14.2168 0.2343 3.0441 22 7 15.2999 0.1702 2.3027 23 14 14.3619 0.4830 4.8897 24 1 14.4438 -0.8385 5.5623 25 1 15.5868 1.2674 5.1888 26 1 13.1702 1.2176 5.3854 27 6 4.4373 -0.1569 3.3529 28 1 4.5871 0.2901 4.3357 29 6 3.9611 -1.6039 3.4952 30 6 3.4181 0.6644 2.5414 31 1 -0.3632 -1.0232 0.0964 32 1 -0.3633 0.5950 0.8378 33 1 -0.3633 0.4280 -0.9343 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.7247 3.7498 -0.4773 37 1 0.2479 3.2707 -2.1240 38 1 -0.3124 2.3243 -0.7244 39 1 6.1560 1.1029 0.7549 40 1 5.7889 2.0620 2.2255 41 1 6.9042 1.0247 3.9584 42 1 6.9587 -0.7391 4.1917 43 1 8.1832 0.6850 1.9200 44 1 9.3400 1.1081 4.0146 45 1 9.3949 -0.6555 4.2486 46 1 11.9092 0.3126 4.1872 47 1 16.1746 0.2524 2.7137 48 1 3.8273 -2.0414 2.5058 49 1 4.7040 -2.1781 4.0489 50 1 3.0128 -1.6232 4.0323 51 1 3.0826 1.5213 3.1255 52 1 2.5649 0.0414 2.2726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105906267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:27 Heat of formation + Delta-G solvation = -109.966795 kcal Electronic energy + Delta-G solvation = -30187.866266 eV Core-core repulsion = 25994.709578 eV Total energy + Delta-G solvation = -4193.156688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73867 -39.06467 -38.38450 -37.55687 -35.51585 -34.02203 -33.78857 -32.94944 -31.65838 -30.74704 -28.97722 -27.28528 -26.81123 -26.02185 -24.85157 -23.57322 -22.51746 -21.65097 -20.38968 -19.89629 -19.33257 -18.33633 -17.76216 -17.13585 -16.61196 -16.15272 -15.74555 -15.68640 -15.58372 -14.93756 -14.65352 -14.52540 -14.45860 -14.17281 -14.05898 -13.74750 -13.54823 -13.31712 -13.16623 -13.07692 -12.97938 -12.72132 -12.55976 -12.33665 -12.23383 -12.02719 -11.96709 -11.84355 -11.79363 -11.63882 -11.24513 -11.15418 -11.04392 -10.87689 -10.83383 -10.58694 -10.35302 -9.95810 -9.66794 -9.55719 -8.95708 -8.58619 -8.18787 -8.14083 -6.29134 -3.80576 2.34351 2.39825 3.02906 3.07514 3.15626 3.47512 3.75624 3.90729 4.10107 4.11737 4.13211 4.31858 4.35140 4.47442 4.53187 4.67287 4.79563 4.81430 4.91814 4.94559 4.98165 5.00796 5.05750 5.10762 5.19839 5.20551 5.22961 5.26710 5.31874 5.42778 5.47358 5.52010 5.58302 5.59729 5.61637 5.69705 5.73645 5.78178 5.82961 5.86317 5.89172 5.95135 6.18050 6.63039 7.07190 7.24147 7.54605 7.60068 7.93030 8.16736 8.61679 8.97133 9.44288 9.84756 10.84045 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.001901 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.217565 B =14725.270145 C =15528.761455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.080 3.920 4 H 0.084 0.916 5 O -0.357 6.357 6 C 0.023 3.977 7 C 0.528 3.472 8 O -0.513 6.513 9 N -0.621 5.621 10 C 0.105 3.895 11 C -0.095 4.095 12 H 0.097 0.903 13 C 0.071 3.929 14 N -0.670 5.670 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.100 4.100 28 H 0.088 0.912 29 C -0.144 4.144 30 C 0.096 3.904 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.067 0.933 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.064 1.660 7.004 34.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.018 3.982 4 H 0.102 0.898 5 O -0.274 6.274 6 C -0.074 4.074 7 C 0.315 3.685 8 O -0.386 6.386 9 N -0.357 5.357 10 C -0.017 4.017 11 C -0.115 4.115 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.302 5.302 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.444 6.444 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.119 4.119 28 H 0.106 0.894 29 C -0.201 4.201 30 C -0.027 4.027 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -33.433 1.054 5.343 33.873 hybrid contribution 0.147 1.275 2.083 2.446 sum -33.285 2.329 7.425 34.183 Atomic orbital electron populations 1.21851 0.94655 1.02445 1.02093 1.22063 0.97120 0.94844 1.04056 1.21952 0.91855 0.95419 0.88981 0.89822 1.88060 1.46036 1.63619 1.29679 1.23032 0.87512 0.93559 1.03253 1.20188 0.89886 0.77232 0.81227 1.90767 1.63901 1.46802 1.37144 1.48708 1.08835 1.67076 1.11112 1.22557 0.81275 0.97597 1.00250 1.22359 0.93210 0.99144 0.96766 0.88423 1.21942 0.88693 1.00116 0.95163 1.60076 0.99792 1.57252 1.13129 1.21701 0.90514 1.00588 0.95641 1.19721 0.83876 0.84065 0.88884 1.90580 1.86131 1.52774 1.14937 1.42204 1.05989 1.66091 1.08788 1.19440 0.81940 1.47039 0.94914 0.86271 1.25042 0.95100 0.97733 0.98353 1.69621 0.97827 1.49189 1.35513 0.86661 0.78414 0.78918 0.85305 1.19616 1.20218 1.19567 1.22100 0.94184 0.96600 0.99048 0.89409 1.21855 1.01192 0.94828 1.02242 1.22412 0.96210 0.98253 0.85836 0.91857 0.92673 0.91899 0.90050 0.90036 0.93958 0.89090 0.93271 0.88961 0.91058 0.95204 0.90486 0.82913 0.93773 0.89429 0.79724 0.91631 0.92311 0.91746 0.92459 0.91441 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.69 37.16 0.32 -0.42 16 2 C -0.14 -0.99 5.48 -26.73 -0.15 -1.14 16 3 C 0.08 0.71 2.10 -27.88 -0.06 0.65 16 4 H 0.08 0.54 7.65 -51.93 -0.40 0.14 16 5 O -0.36 -3.87 9.73 -54.84 -0.53 -4.40 16 6 C 0.02 0.15 10.38 101.05 1.05 1.20 16 7 C 0.53 6.60 7.21 -10.98 -0.08 6.53 16 8 O -0.51 -9.05 16.74 -14.05 -0.24 -9.28 16 9 N -0.62 -6.24 3.29 -169.98 -0.56 -6.80 16 10 C 0.11 1.14 5.95 -2.31 -0.01 1.13 16 11 C -0.10 -0.89 2.82 -88.93 -0.25 -1.14 16 12 H 0.10 1.09 7.86 -51.93 -0.41 0.68 16 13 C 0.07 0.73 5.05 -3.82 -0.02 0.71 16 14 N -0.67 -10.08 6.13 -115.06 -0.71 -10.78 16 15 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 16 C 0.45 10.27 7.82 -10.99 -0.09 10.19 16 17 O -0.56 -15.39 15.78 5.55 0.09 -15.31 16 18 N -0.59 -14.18 5.09 -10.97 -0.06 -14.24 16 19 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 20 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 23 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 27 C -0.10 -0.63 3.17 -89.25 -0.28 -0.91 16 28 H 0.09 0.46 7.85 -51.92 -0.41 0.05 16 29 C -0.14 -0.80 8.90 37.15 0.33 -0.47 16 30 C 0.10 0.60 6.25 -2.98 -0.02 0.58 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.33 6.62 -51.93 -0.34 -0.01 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.46 5.43 -51.93 -0.28 0.18 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.22 5.83 -51.93 -0.30 -0.08 16 39 H 0.09 1.26 7.78 -51.93 -0.40 0.86 16 40 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 41 H 0.03 0.28 7.99 -51.93 -0.41 -0.14 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.35 5.66 7.83 -39.29 -0.31 5.35 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 51 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.08 0.38 4.76 -51.93 -0.25 0.14 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -37.10 411.49 -8.06 -45.17 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.79 Total: 10.14 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 0.47 Total: 9.82 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.55 Total: -57.05 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.68 Total: -28.99 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.10 -8.06 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105906267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.800 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds