Wall clock time and date at job start Wed Apr 1 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 H 1.09004 * 109.47317 * 54.30275 * 3 2 1 5 5 O 1.42894 * 109.46912 * 294.30273 * 3 2 1 6 6 C 1.42897 * 113.99994 * 99.35594 * 5 3 2 7 7 C 1.50702 * 109.46719 * 174.30424 * 3 2 1 8 8 O 1.21279 * 119.99778 * 107.78462 * 7 3 2 9 9 N 1.34778 * 120.00205 * 287.77810 * 7 3 2 10 10 C 1.48110 * 127.03331 * 184.24278 * 9 7 3 11 11 C 1.54602 * 103.42297 * 219.28819 * 10 9 7 12 12 H 1.09002 * 110.72937 * 81.23857 * 11 10 9 13 13 C 1.52997 * 110.83811 * 204.44911 * 11 10 9 14 14 N 1.46904 * 109.46827 * 288.56220 * 13 11 10 15 15 C 1.46903 * 110.99882 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46799 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00518 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99753 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99983 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00425 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00387 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46988 * 89.99808 * 23 21 19 25 25 H 1.48494 * 109.47532 * 209.99987 * 23 21 19 26 26 H 1.48505 * 109.46922 * 330.00282 * 23 21 19 27 27 C 1.54619 * 102.91244 * 322.87381 * 11 10 9 28 28 H 1.09010 * 110.32383 * 262.80703 * 27 11 10 29 29 C 1.52992 * 110.41815 * 140.63479 * 27 11 10 30 30 C 1.47485 * 127.02905 * 4.56413 * 9 7 3 31 31 H 1.09002 * 109.46620 * 185.38459 * 1 2 3 32 32 H 1.08994 * 109.47312 * 305.38482 * 1 2 3 33 33 H 1.09002 * 109.46728 * 65.38567 * 1 2 3 34 34 H 1.08991 * 109.47273 * 239.99843 * 2 1 3 35 35 H 1.09003 * 109.46685 * 119.99493 * 2 1 3 36 36 H 1.08997 * 109.47440 * 65.49956 * 6 5 3 37 37 H 1.09005 * 109.47235 * 185.49724 * 6 5 3 38 38 H 1.08999 * 109.47210 * 305.49440 * 6 5 3 39 39 H 1.08998 * 110.66526 * 337.77142 * 10 9 7 40 40 H 1.09000 * 110.66072 * 100.89705 * 10 9 7 41 41 H 1.09002 * 109.46798 * 48.56038 * 13 11 10 42 42 H 1.08997 * 109.47347 * 168.56479 * 13 11 10 43 43 H 1.00902 * 110.99694 * 56.04870 * 14 13 11 44 44 H 1.09000 * 109.46869 * 299.99910 * 15 14 13 45 45 H 1.08997 * 109.47140 * 59.99666 * 15 14 13 46 46 H 0.96999 * 120.00145 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00390 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.47132 * 302.87153 * 29 27 11 49 49 H 1.09001 * 109.47119 * 62.87012 * 29 27 11 50 50 H 1.09000 * 109.47341 * 182.87259 * 29 27 11 51 51 H 1.08997 * 109.91124 * 273.87128 * 30 9 7 52 52 H 1.09000 * 109.91910 * 34.96248 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 0.8346 5 8 1.6760 2.0764 -1.2279 6 6 0.5152 2.9044 -1.1327 7 6 3.5404 1.4448 0.1410 8 8 4.2382 1.7333 -0.8081 9 7 4.1068 1.1265 1.3218 10 6 5.5488 1.1628 1.6581 11 6 5.7456 -0.0980 2.5309 12 1 5.8502 -0.9862 1.9078 13 6 6.9571 0.0611 3.4516 14 7 8.1896 -0.0062 2.6551 15 6 9.3764 0.1438 3.5078 16 6 10.6184 0.0703 2.6575 17 8 10.5242 -0.0907 1.4590 18 7 11.8338 0.1835 3.2288 19 6 12.9638 0.1171 2.4552 20 1 12.8800 -0.0263 1.3881 21 6 14.2168 0.2343 3.0441 22 7 15.2999 0.1702 2.3027 23 14 14.3619 0.4830 4.8897 24 1 14.4438 -0.8385 5.5623 25 1 15.5868 1.2674 5.1888 26 1 13.1702 1.2176 5.3854 27 6 4.4373 -0.1569 3.3529 28 1 4.5871 0.2901 4.3357 29 6 3.9611 -1.6039 3.4952 30 6 3.4181 0.6644 2.5414 31 1 -0.3632 -1.0232 0.0964 32 1 -0.3633 0.5950 0.8378 33 1 -0.3633 0.4280 -0.9343 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.7247 3.7498 -0.4773 37 1 0.2479 3.2707 -2.1240 38 1 -0.3124 2.3243 -0.7244 39 1 6.1560 1.1029 0.7549 40 1 5.7889 2.0620 2.2255 41 1 6.9042 1.0247 3.9584 42 1 6.9587 -0.7391 4.1917 43 1 8.1832 0.6850 1.9200 44 1 9.3400 1.1081 4.0146 45 1 9.3949 -0.6555 4.2486 46 1 11.9092 0.3126 4.1872 47 1 16.1746 0.2524 2.7137 48 1 3.8273 -2.0414 2.5058 49 1 4.7040 -2.1781 4.0489 50 1 3.0128 -1.6232 4.0323 51 1 3.0826 1.5213 3.1255 52 1 2.5649 0.0414 2.2726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105906267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:25 Heat of formation + Delta-G solvation = -139.778226 kcal Electronic energy + Delta-G solvation = -30189.158987 eV Core-core repulsion = 25994.709578 eV Total energy + Delta-G solvation = -4194.449408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.54008 -40.33662 -39.65984 -38.44862 -36.70225 -35.88527 -34.55859 -33.77402 -33.62710 -31.60022 -29.68282 -28.46602 -27.40064 -26.94304 -25.98217 -24.89645 -23.14693 -22.36929 -21.38458 -21.01276 -20.67394 -20.18627 -18.55282 -17.99582 -17.76230 -17.23681 -16.86669 -16.66736 -16.57057 -16.40334 -15.72379 -15.63976 -15.23334 -15.10894 -15.02412 -14.79564 -14.64748 -14.40580 -14.23867 -14.13418 -13.92734 -13.54985 -13.53885 -13.25806 -13.23585 -13.01205 -12.92943 -12.75737 -12.57125 -12.42896 -12.39369 -12.28759 -11.98366 -11.82895 -11.70192 -11.54676 -11.51560 -11.47673 -11.07358 -10.47121 -10.43691 -10.25844 -9.77393 -9.31443 -8.41807 -6.03398 1.29767 1.36270 1.43531 1.45177 1.64871 1.95362 2.23269 2.71726 2.88180 3.14208 3.29154 3.42953 3.55140 3.68997 3.76732 3.85622 3.90145 4.10970 4.16612 4.27063 4.33919 4.35012 4.38583 4.45462 4.48898 4.53353 4.54643 4.56908 4.63583 4.70881 4.79578 4.80917 4.82322 4.83805 4.93738 5.03316 5.07987 5.13185 5.15695 5.20080 5.35651 5.38697 5.52073 5.56086 5.90163 6.04630 6.06960 6.34502 6.45272 6.59244 6.87520 7.03680 7.38960 7.96722 8.76111 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.001901 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.217565 B =14725.270145 C =15528.761455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.085 3.915 4 H 0.118 0.882 5 O -0.396 6.396 6 C 0.017 3.983 7 C 0.515 3.485 8 O -0.584 6.584 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.089 4.089 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.695 5.695 15 C 0.064 3.936 16 C 0.444 3.556 17 O -0.619 6.619 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.051 0.949 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.229 1.229 27 C -0.088 4.088 28 H 0.114 0.886 29 C -0.143 4.143 30 C 0.090 3.910 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.339 0.661 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.528 1.988 12.718 39.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.024 3.976 4 H 0.135 0.865 5 O -0.314 6.314 6 C -0.079 4.079 7 C 0.304 3.696 8 O -0.463 6.463 9 N -0.352 5.352 10 C -0.022 4.022 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.054 4.054 14 N -0.327 5.327 15 C -0.068 4.068 16 C 0.232 3.768 17 O -0.503 6.503 18 N -0.231 5.231 19 C -0.461 4.461 20 H 0.069 0.931 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.789 3.211 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.108 4.108 28 H 0.132 0.868 29 C -0.200 4.200 30 C -0.031 4.031 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.157 0.843 44 H 0.097 0.903 45 H 0.138 0.862 46 H 0.227 0.773 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.114 0.886 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -36.959 1.362 11.126 38.621 hybrid contribution 1.213 1.146 0.157 1.676 sum -35.746 2.508 11.283 37.568 Atomic orbital electron populations 1.21836 0.92511 1.03523 1.02699 1.22052 0.98846 0.93283 1.03451 1.22078 0.89084 0.96944 0.89543 0.86485 1.88021 1.47810 1.64485 1.31094 1.23241 0.86935 0.93712 1.04010 1.21083 0.91502 0.76117 0.80894 1.90723 1.65657 1.50276 1.39618 1.48824 1.08837 1.65758 1.11755 1.22534 0.81633 0.99177 0.98849 1.22247 0.95068 0.96904 0.96628 0.91074 1.22059 0.86415 1.02007 0.94918 1.60094 1.01343 1.57428 1.13850 1.21638 0.87027 1.03606 0.94562 1.21148 0.85503 0.81138 0.88982 1.90560 1.87212 1.54462 1.18088 1.42013 1.05082 1.66684 1.09371 1.19002 0.84690 1.49505 0.92862 0.93084 1.26193 0.93613 0.96145 1.05683 1.69815 0.98841 1.50027 1.38949 0.85306 0.79924 0.79906 0.75975 1.17982 1.20053 1.15199 1.22113 0.91803 0.97425 0.99432 0.86814 1.21859 1.02350 0.93981 1.01807 1.22764 0.96418 0.99678 0.84220 0.90886 0.90401 0.92607 0.92868 0.88496 0.93187 0.88799 0.90841 0.93402 0.89789 0.92828 0.88624 0.84304 0.90280 0.86247 0.77324 0.91124 0.93677 0.92005 0.90009 0.88622 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.69 71.98 0.63 -0.41 16 2 C -0.14 -1.75 5.48 30.60 0.17 -1.58 16 3 C 0.08 1.44 2.10 29.85 0.06 1.50 16 4 H 0.12 1.14 7.65 -2.39 -0.02 1.12 16 5 O -0.40 -8.70 9.73 -130.23 -1.27 -9.97 16 6 C 0.02 0.20 10.38 113.37 1.18 1.37 16 7 C 0.51 13.37 7.21 87.66 0.63 14.00 16 8 O -0.58 -22.56 16.74 15.72 0.26 -22.30 16 9 N -0.62 -12.08 3.29 -810.09 -2.67 -14.75 16 10 C 0.10 2.23 5.95 86.62 0.51 2.74 16 11 C -0.09 -1.54 2.82 -9.70 -0.03 -1.57 16 12 H 0.07 1.63 7.86 -2.39 -0.02 1.61 16 13 C 0.07 1.32 5.05 86.30 0.44 1.76 16 14 N -0.69 -20.25 6.13 -517.94 -3.17 -23.43 16 15 C 0.06 1.90 6.17 85.55 0.53 2.43 16 16 C 0.44 20.50 7.82 87.66 0.69 21.19 16 17 O -0.62 -35.83 15.78 -3.06 -0.05 -35.87 16 18 N -0.59 -28.20 5.09 -306.99 -1.56 -29.76 16 19 C -0.33 -19.87 10.16 84.04 0.85 -19.02 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 22 N -0.94 -57.44 13.96 21.66 0.30 -57.13 16 23 Si 0.97 38.89 27.74 68.60 1.90 40.79 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 27 C -0.09 -0.78 3.17 -9.90 -0.03 -0.81 16 28 H 0.11 0.52 7.85 -2.38 -0.02 0.50 16 29 C -0.14 -1.08 8.90 71.98 0.64 -0.44 16 30 C 0.09 0.80 6.25 86.53 0.54 1.34 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.05 0.48 6.62 -2.39 -0.02 0.47 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.86 5.43 -2.39 -0.01 0.85 16 36 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 0.48 5.83 -2.39 -0.01 0.47 16 39 H 0.05 1.47 7.78 -2.39 -0.02 1.46 16 40 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.05 0.74 7.99 -2.39 -0.02 0.72 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.34 11.27 7.83 -89.69 -0.70 10.57 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 46 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 47 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.10 0.53 4.76 -2.39 -0.01 0.52 16 Total: -1.00 -93.62 411.49 0.66 -92.96 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.37 Total: 37.50 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 7.27 Total: 21.97 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -7.10 Total: -125.07 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -1.05 Total: -68.14 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -93.62 0.66 -92.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105906267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.818 kcal (2) G-P(sol) polarization free energy of solvation -93.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds