Wall clock time and date at job start Wed Apr 1 2020 00:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52995 * 109.47163 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47279 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00161 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.47278 * 330.00440 * 6 5 4 8 8 C 1.53005 * 109.47219 * 90.00270 * 6 5 4 9 9 C 1.50697 * 109.47175 * 210.00458 * 6 5 4 10 10 O 1.21278 * 120.00295 * 343.89357 * 9 6 5 11 11 N 1.34779 * 120.00078 * 163.90118 * 9 6 5 12 12 C 1.47085 * 120.87921 * 4.13695 * 11 9 6 13 13 C 1.53694 * 108.27663 * 128.75744 * 12 11 9 14 14 N 1.46901 * 109.25502 * 54.08260 * 13 12 11 15 15 C 1.46898 * 110.99853 * 172.60834 * 14 13 12 16 16 C 1.50707 * 109.47045 * 294.29889 * 15 14 13 17 17 O 1.21290 * 119.99946 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99989 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99997 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99759 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99947 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47016 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47100 * 119.99462 * 23 21 19 26 26 H 1.48493 * 109.47176 * 239.99698 * 23 21 19 27 27 C 1.46899 * 111.26919 * 296.75217 * 14 13 12 28 28 C 1.47079 * 120.88277 * 184.41400 * 11 9 6 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46999 * 300.00121 * 1 2 3 31 31 H 1.09002 * 109.47590 * 59.99702 * 1 2 3 32 32 H 1.09004 * 109.46999 * 239.99879 * 2 1 3 33 33 H 1.09000 * 109.46975 * 119.99873 * 2 1 3 34 34 H 1.09004 * 109.47262 * 60.00039 * 3 2 1 35 35 H 1.09000 * 109.47072 * 299.99814 * 3 2 1 36 36 H 1.09004 * 109.46999 * 59.99879 * 4 3 2 37 37 H 1.09002 * 109.47590 * 300.00298 * 4 3 2 38 38 H 1.08993 * 109.47441 * 181.41111 * 8 6 5 39 39 H 1.08999 * 109.46885 * 61.40347 * 8 6 5 40 40 H 1.09008 * 109.46829 * 301.40578 * 8 6 5 41 41 H 1.09002 * 109.62151 * 248.52436 * 12 11 9 42 42 H 1.08998 * 109.63226 * 9.10437 * 12 11 9 43 43 H 1.08996 * 109.64814 * 294.07821 * 13 12 11 44 44 H 1.09000 * 109.41837 * 173.94300 * 13 12 11 45 45 H 1.09004 * 109.47415 * 54.29522 * 15 14 13 46 46 H 1.09001 * 109.47131 * 174.29915 * 15 14 13 47 47 H 0.97000 * 120.00018 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99828 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.49252 * 303.15193 * 27 14 13 50 50 H 1.08995 * 109.49130 * 183.06619 * 27 14 13 51 51 H 1.08996 * 109.62781 * 350.89868 * 28 11 9 52 52 H 1.09004 * 109.62290 * 111.47393 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4708 2.9026 0.0012 7 1 5.9029 2.0444 0.5160 8 6 5.9805 2.9419 -1.4410 9 6 5.8738 4.1693 0.7110 10 8 5.0532 5.0395 0.9115 11 7 7.1463 4.3353 1.1231 12 6 8.1775 3.3339 0.8112 13 6 9.3788 4.0584 0.1834 14 7 9.8140 5.1394 1.0778 15 6 11.0650 5.7448 0.6020 16 6 12.1770 4.7310 0.6853 17 8 11.9498 3.6143 1.1007 18 7 13.4240 5.0653 0.2983 19 6 14.4358 4.1433 0.3746 20 1 14.2334 3.1490 0.7444 21 6 15.7214 4.4880 -0.0239 22 7 15.9676 5.6978 -0.4744 23 14 17.0998 3.2315 0.0794 24 1 16.5657 1.9538 0.6157 25 1 17.6638 3.0030 -1.2753 26 1 18.1657 3.7389 0.9802 27 6 8.7646 6.1552 1.2360 28 6 7.5394 5.5196 1.9016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9336 0.9285 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 7.0687 3.0027 -1.4402 39 1 5.5681 3.8140 -1.9484 40 1 5.6675 2.0368 -1.9617 41 1 8.4873 2.8302 1.7269 42 1 7.7785 2.6048 0.1060 43 1 9.0910 4.4776 -0.7807 44 1 10.1960 3.3509 0.0436 45 1 10.9429 6.0659 -0.4325 46 1 11.3111 6.6060 1.2232 47 1 13.6058 5.9585 -0.0335 48 1 16.8650 5.9383 -0.7529 49 1 8.4853 6.5451 0.2571 50 1 9.1364 6.9682 1.8594 51 1 6.7183 6.2363 1.9176 52 1 7.7891 5.2219 2.9200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112676501.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:00 Heat of formation + Delta-G solvation = -113.092514 kcal Electronic energy + Delta-G solvation = -30179.131793 eV Core-core repulsion = 25985.839564 eV Total energy + Delta-G solvation = -4193.292229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.53461 -38.93387 -38.13305 -37.14339 -35.38573 -34.60677 -33.84072 -32.22549 -31.30553 -30.70963 -29.22502 -28.82181 -26.02589 -24.72021 -23.85022 -23.80231 -23.06582 -21.59183 -21.11537 -19.34593 -18.96166 -17.93343 -17.59762 -16.92249 -16.41604 -16.15162 -15.76783 -15.49001 -15.10934 -14.96518 -14.79402 -14.62365 -14.51822 -14.16763 -13.87848 -13.84387 -13.66369 -13.49871 -13.30642 -12.70639 -12.64190 -12.56321 -12.36550 -12.09250 -11.97125 -11.68245 -11.63764 -11.56579 -11.47693 -11.27544 -11.24537 -11.18762 -11.12598 -11.03270 -10.86267 -10.37967 -10.26937 -10.11979 -9.57680 -9.52586 -8.89538 -8.41754 -8.03332 -7.93639 -6.46244 -3.87267 2.46415 2.58082 3.12796 3.23963 3.30423 3.48410 3.83688 3.90470 4.18779 4.24927 4.51152 4.53856 4.64652 4.69439 4.76264 4.82289 4.91488 4.94681 5.01603 5.04411 5.13340 5.19316 5.20541 5.28196 5.29513 5.36168 5.38779 5.42320 5.44356 5.46895 5.52410 5.69993 5.72301 5.75890 5.78259 5.84591 5.86342 5.87475 5.92449 6.09714 6.12240 6.20940 6.41293 6.81613 7.09708 7.25698 7.33582 7.51008 8.01588 8.06720 8.56310 9.13289 9.49388 10.00299 10.71399 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.001860 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.216088 B =15050.247165 C =15995.760389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.358 6.358 6 C 0.073 3.927 7 H 0.084 0.916 8 C -0.175 4.175 9 C 0.518 3.482 10 O -0.527 6.527 11 N -0.611 5.611 12 C 0.107 3.893 13 C 0.039 3.961 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.041 3.959 28 C 0.120 3.880 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.028 0.972 44 H 0.117 0.883 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.035 0.965 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.835 -5.878 -0.968 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.277 6.277 6 C 0.012 3.988 7 H 0.102 0.898 8 C -0.232 4.232 9 C 0.305 3.695 10 O -0.402 6.402 11 N -0.346 5.346 12 C -0.015 4.015 13 C -0.089 4.089 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.088 4.088 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.135 0.865 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.106 0.894 51 H 0.112 0.888 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.298 -6.125 -0.191 24.091 hybrid contribution 1.120 0.189 -1.008 1.518 sum -22.178 -5.937 -1.199 22.990 Atomic orbital electron populations 1.21752 0.95359 1.01723 1.02094 1.21446 0.96317 0.95951 1.02249 1.21539 0.93158 0.97260 1.03659 1.22667 0.95456 0.83511 1.00244 1.88030 1.18430 1.26230 1.94985 1.21877 0.83510 0.96551 0.96902 0.89778 1.22329 1.02157 1.03888 0.94847 1.20335 0.81886 0.88466 0.78848 1.90687 1.50364 1.43342 1.55841 1.48198 1.08177 1.23581 1.54659 1.22160 0.87367 0.90462 1.01539 1.22722 0.98170 0.95582 0.92468 1.61497 1.02267 1.10394 1.49751 1.21857 0.90006 0.97467 0.99151 1.19709 0.83690 0.89149 0.84609 1.90470 1.82601 1.22408 1.50883 1.41884 1.06761 1.14796 1.56459 1.19745 0.86980 0.95704 1.40458 0.87806 1.25266 0.98673 0.97048 0.96918 1.69618 1.22509 1.18670 1.43380 0.85805 0.80348 0.80377 0.77833 1.19217 1.20782 1.20740 1.22511 0.91823 0.94569 0.99937 1.21706 0.96443 0.87261 0.94832 0.92596 0.92568 0.92586 0.91807 0.91793 0.90961 0.90993 0.93103 0.93177 0.90364 0.91003 0.91044 0.89795 0.89576 0.95357 0.86543 0.93421 0.89138 0.77480 0.91886 0.94636 0.89415 0.88795 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.87 16 3 C -0.12 -0.91 5.58 -26.73 -0.15 -1.06 16 4 C 0.06 0.49 5.75 37.16 0.21 0.71 16 5 O -0.36 -4.35 9.57 -54.61 -0.52 -4.88 16 6 C 0.07 0.80 2.28 -27.88 -0.06 0.73 16 7 H 0.08 0.74 6.96 -51.92 -0.36 0.38 16 8 C -0.17 -1.61 9.18 37.16 0.34 -1.26 16 9 C 0.52 7.17 7.01 -10.99 -0.08 7.09 16 10 O -0.53 -9.21 16.03 -13.82 -0.22 -9.44 16 11 N -0.61 -7.79 3.00 -172.18 -0.52 -8.31 16 12 C 0.11 1.29 5.95 -3.36 -0.02 1.27 16 13 C 0.04 0.57 5.27 -3.46 -0.02 0.55 16 14 N -0.51 -7.99 4.37 -235.47 -1.03 -9.02 16 15 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 16 C 0.44 9.86 7.44 -10.98 -0.08 9.77 16 17 O -0.58 -14.53 13.91 5.55 0.08 -14.45 16 18 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 19 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 23 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 28 C 0.12 1.50 6.61 -3.60 -0.02 1.47 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.36 7.84 -51.93 -0.41 -0.05 16 37 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.08 0.68 6.08 -51.93 -0.32 0.36 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.53 7.84 -51.92 -0.41 0.12 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.81 4.37 -51.93 -0.23 0.59 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.12 2.04 5.77 -51.93 -0.30 1.74 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 48 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 51 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 52 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 412.39 15.07 6.21 6.21 Total: -1.00 -32.62 412.39 -9.27 -41.90 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.96 Total: 7.97 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 0.04 Total: 11.48 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.88 Total: -54.27 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.67 Total: -28.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.62 -9.27 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112676501.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.197 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds