Wall clock time and date at job start Wed Apr 1 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52995 * 109.47163 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47279 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00161 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.47278 * 330.00440 * 6 5 4 8 8 C 1.53005 * 109.47219 * 90.00270 * 6 5 4 9 9 C 1.50697 * 109.47175 * 210.00458 * 6 5 4 10 10 O 1.21278 * 120.00295 * 343.89357 * 9 6 5 11 11 N 1.34779 * 120.00078 * 163.90118 * 9 6 5 12 12 C 1.47085 * 120.87921 * 4.13695 * 11 9 6 13 13 C 1.53694 * 108.27663 * 128.75744 * 12 11 9 14 14 N 1.46901 * 109.25502 * 54.08260 * 13 12 11 15 15 C 1.46898 * 110.99853 * 172.60834 * 14 13 12 16 16 C 1.50707 * 109.47045 * 294.29889 * 15 14 13 17 17 O 1.21290 * 119.99946 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99989 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99997 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99759 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99947 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47016 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47100 * 119.99462 * 23 21 19 26 26 H 1.48493 * 109.47176 * 239.99698 * 23 21 19 27 27 C 1.46899 * 111.26919 * 296.75217 * 14 13 12 28 28 C 1.47079 * 120.88277 * 184.41400 * 11 9 6 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46999 * 300.00121 * 1 2 3 31 31 H 1.09002 * 109.47590 * 59.99702 * 1 2 3 32 32 H 1.09004 * 109.46999 * 239.99879 * 2 1 3 33 33 H 1.09000 * 109.46975 * 119.99873 * 2 1 3 34 34 H 1.09004 * 109.47262 * 60.00039 * 3 2 1 35 35 H 1.09000 * 109.47072 * 299.99814 * 3 2 1 36 36 H 1.09004 * 109.46999 * 59.99879 * 4 3 2 37 37 H 1.09002 * 109.47590 * 300.00298 * 4 3 2 38 38 H 1.08993 * 109.47441 * 181.41111 * 8 6 5 39 39 H 1.08999 * 109.46885 * 61.40347 * 8 6 5 40 40 H 1.09008 * 109.46829 * 301.40578 * 8 6 5 41 41 H 1.09002 * 109.62151 * 248.52436 * 12 11 9 42 42 H 1.08998 * 109.63226 * 9.10437 * 12 11 9 43 43 H 1.08996 * 109.64814 * 294.07821 * 13 12 11 44 44 H 1.09000 * 109.41837 * 173.94300 * 13 12 11 45 45 H 1.09004 * 109.47415 * 54.29522 * 15 14 13 46 46 H 1.09001 * 109.47131 * 174.29915 * 15 14 13 47 47 H 0.97000 * 120.00018 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99828 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.49252 * 303.15193 * 27 14 13 50 50 H 1.08995 * 109.49130 * 183.06619 * 27 14 13 51 51 H 1.08996 * 109.62781 * 350.89868 * 28 11 9 52 52 H 1.09004 * 109.62290 * 111.47393 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4708 2.9026 0.0012 7 1 5.9029 2.0444 0.5160 8 6 5.9805 2.9419 -1.4410 9 6 5.8738 4.1693 0.7110 10 8 5.0532 5.0395 0.9115 11 7 7.1463 4.3353 1.1231 12 6 8.1775 3.3339 0.8112 13 6 9.3788 4.0584 0.1834 14 7 9.8140 5.1394 1.0778 15 6 11.0650 5.7448 0.6020 16 6 12.1770 4.7310 0.6853 17 8 11.9498 3.6143 1.1007 18 7 13.4240 5.0653 0.2983 19 6 14.4358 4.1433 0.3746 20 1 14.2334 3.1490 0.7444 21 6 15.7214 4.4880 -0.0239 22 7 15.9676 5.6978 -0.4744 23 14 17.0998 3.2315 0.0794 24 1 16.5657 1.9538 0.6157 25 1 17.6638 3.0030 -1.2753 26 1 18.1657 3.7389 0.9802 27 6 8.7646 6.1552 1.2360 28 6 7.5394 5.5196 1.9016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9336 0.9285 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 7.0687 3.0027 -1.4402 39 1 5.5681 3.8140 -1.9484 40 1 5.6675 2.0368 -1.9617 41 1 8.4873 2.8302 1.7269 42 1 7.7785 2.6048 0.1060 43 1 9.0910 4.4776 -0.7807 44 1 10.1960 3.3509 0.0436 45 1 10.9429 6.0659 -0.4325 46 1 11.3111 6.6060 1.2232 47 1 13.6058 5.9585 -0.0335 48 1 16.8650 5.9383 -0.7529 49 1 8.4853 6.5451 0.2571 50 1 9.1364 6.9682 1.8594 51 1 6.7183 6.2363 1.9176 52 1 7.7891 5.2219 2.9200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112676501.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:59 Heat of formation + Delta-G solvation = -134.970292 kcal Electronic energy + Delta-G solvation = -30180.080485 eV Core-core repulsion = 25985.839564 eV Total energy + Delta-G solvation = -4194.240921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58411 -40.35966 -39.22175 -38.40024 -36.08265 -35.96340 -35.47403 -33.24682 -33.10707 -31.67443 -30.17672 -29.76389 -27.50535 -25.97915 -25.06196 -24.70666 -23.90599 -22.34551 -21.95196 -21.04762 -20.05898 -19.80430 -18.57008 -17.87921 -17.72401 -17.08853 -16.81109 -16.61735 -16.48464 -16.31910 -16.03707 -15.67821 -15.49602 -15.38743 -15.26184 -15.18278 -14.58473 -14.44948 -14.14121 -13.92942 -13.66570 -13.50245 -13.30469 -13.23846 -13.15240 -12.97544 -12.78100 -12.75017 -12.38571 -12.35792 -12.30456 -12.21356 -12.15762 -12.07951 -11.96225 -11.83887 -11.54234 -11.42529 -10.96900 -10.51369 -10.32805 -9.97732 -9.80726 -9.22685 -8.43853 -5.91904 1.38480 1.42572 1.44300 1.57676 1.63553 2.08483 2.29767 2.64487 2.76948 3.23614 3.33898 3.38095 3.78706 3.85467 3.90776 3.97027 4.00519 4.11317 4.13218 4.17252 4.20754 4.26184 4.39766 4.40672 4.41643 4.46201 4.50834 4.58947 4.60081 4.67109 4.70929 4.73698 4.81368 4.90030 4.92293 4.94558 5.00266 5.03222 5.16022 5.23697 5.34335 5.35442 5.44226 5.44621 5.81111 6.04102 6.07987 6.13521 6.31747 6.63437 7.02126 7.16291 7.60276 8.15013 8.73717 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.001860 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.216088 B =15050.247165 C =15995.760389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.117 4.117 4 C 0.052 3.948 5 O -0.387 6.387 6 C 0.073 3.927 7 H 0.109 0.891 8 C -0.169 4.169 9 C 0.514 3.486 10 O -0.570 6.570 11 N -0.608 5.608 12 C 0.115 3.885 13 C 0.041 3.959 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.575 5.575 19 C -0.328 4.328 20 H 0.082 0.918 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.047 3.953 28 C 0.119 3.881 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.038 0.962 50 H 0.106 0.894 51 H 0.092 0.908 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.103 -6.731 -1.384 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.024 4.024 5 O -0.307 6.307 6 C 0.012 3.988 7 H 0.126 0.874 8 C -0.227 4.227 9 C 0.302 3.698 10 O -0.449 6.449 11 N -0.342 5.342 12 C -0.007 4.007 13 C -0.088 4.088 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.213 5.213 19 C -0.458 4.458 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.081 4.081 28 C -0.004 4.004 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.124 0.876 51 H 0.110 0.890 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.567 -6.975 -0.610 24.585 hybrid contribution 1.123 0.454 -0.847 1.478 sum -22.445 -6.521 -1.457 23.418 Atomic orbital electron populations 1.21768 0.95159 1.02255 1.01889 1.21425 0.96474 0.94675 1.02930 1.21543 0.92948 0.98333 1.02662 1.22878 0.95706 0.82229 1.01542 1.88005 1.19036 1.28439 1.95180 1.21971 0.83476 0.95604 0.97718 0.87366 1.22307 1.02331 1.04336 0.93693 1.20945 0.81545 0.89028 0.78255 1.90662 1.51500 1.45046 1.57683 1.48258 1.08152 1.23672 1.54103 1.22146 0.86315 0.90321 1.01918 1.22630 0.98018 0.95001 0.93139 1.61479 1.02554 1.11380 1.50105 1.21725 0.88689 0.96087 1.00786 1.20662 0.84105 0.89665 0.82425 1.90452 1.83224 1.24207 1.51619 1.41950 1.07218 1.14591 1.57496 1.19701 0.88477 0.95621 1.41977 0.90010 1.26003 1.00291 0.98832 0.96191 1.69681 1.23234 1.19788 1.43632 0.84892 0.77508 0.77934 0.78142 1.19596 1.19833 1.19954 1.22526 0.90902 0.94231 1.00447 1.21725 0.96239 0.87356 0.95046 0.91676 0.92959 0.92676 0.90871 0.91301 0.92338 0.91658 0.91261 0.92261 0.89732 0.92527 0.88820 0.90210 0.86773 0.94531 0.89530 0.91705 0.87056 0.77150 0.91458 0.94391 0.87615 0.89011 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.20 5.93 30.59 0.18 -1.02 16 3 C -0.12 -1.70 5.58 30.59 0.17 -1.53 16 4 C 0.05 0.80 5.75 71.98 0.41 1.22 16 5 O -0.39 -9.01 9.57 -130.45 -1.25 -10.26 16 6 C 0.07 1.47 2.28 29.85 0.07 1.54 16 7 H 0.11 1.61 6.96 -2.38 -0.02 1.59 16 8 C -0.17 -2.75 9.18 71.98 0.66 -2.09 16 9 C 0.51 13.74 7.01 87.66 0.61 14.36 16 10 O -0.57 -19.98 16.03 15.50 0.25 -19.73 16 11 N -0.61 -14.69 3.00 -817.05 -2.45 -17.14 16 12 C 0.12 2.57 5.95 86.50 0.51 3.09 16 13 C 0.04 1.14 5.27 86.54 0.46 1.60 16 14 N -0.53 -15.69 4.37 -898.88 -3.93 -19.61 16 15 C 0.06 1.87 5.45 85.56 0.47 2.34 16 16 C 0.44 19.76 7.44 87.66 0.65 20.41 16 17 O -0.61 -30.94 13.91 -3.06 -0.04 -30.99 16 18 N -0.58 -28.20 5.29 -306.98 -1.62 -29.82 16 19 C -0.33 -17.93 9.68 84.04 0.81 -17.12 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 22 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 23 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 C 0.05 1.10 5.62 86.38 0.49 1.59 16 28 C 0.12 2.82 6.61 86.35 0.57 3.39 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.80 7.84 -2.38 -0.02 0.78 16 37 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.08 1.25 6.08 -2.39 -0.01 1.23 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.11 7.84 -2.38 -0.02 1.09 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 1.88 4.37 -2.39 -0.01 1.87 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 3.01 5.77 -2.39 -0.01 3.00 16 45 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 46 H 0.11 3.15 7.97 -2.39 -0.02 3.13 16 47 H 0.39 18.56 7.90 -92.71 -0.73 17.83 16 48 H 0.28 13.70 8.31 -92.71 -0.77 12.92 16 49 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.11 2.10 7.99 -2.39 -0.02 2.09 16 51 H 0.09 2.26 7.04 -2.39 -0.02 2.24 16 52 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -71.25 412.39 0.69 -70.56 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.18 Total: 34.86 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 7.25 Total: 26.75 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -7.72 Total: -115.05 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -1.04 Total: -60.98 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.25 0.69 -70.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112676501.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.410 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds