Wall clock time and date at job start Wed Apr 1 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46983 * 2 1 4 4 C 1.42906 * 114.00341 * 185.13803 * 3 2 1 5 5 H 1.08994 * 109.46712 * 344.38958 * 4 3 2 6 6 C 1.53003 * 109.47019 * 104.38888 * 4 3 2 7 7 C 1.53004 * 109.47011 * 295.44777 * 6 4 3 8 8 C 1.50694 * 109.46984 * 224.38764 * 4 3 2 9 9 O 1.21276 * 120.00749 * 346.69176 * 8 4 3 10 10 N 1.34789 * 119.99652 * 166.68759 * 8 4 3 11 11 C 1.47739 * 121.63021 * 355.16854 * 10 8 4 12 12 C 1.52992 * 108.96052 * 271.67730 * 11 10 8 13 13 C 1.50716 * 109.42298 * 305.26736 * 12 11 10 14 14 O 1.21279 * 120.12424 * 295.13207 * 13 12 11 15 15 N 1.35483 * 119.64151 * 115.17759 * 13 12 11 16 16 C 1.47131 * 118.09941 * 180.26795 * 15 13 12 17 17 C 1.53006 * 109.07987 * 100.16690 * 16 15 13 18 18 N 1.47777 * 108.79654 * 301.39982 * 17 16 15 19 19 C 1.36937 * 121.63581 * 277.41323 * 18 17 16 20 20 H 1.08007 * 119.99575 * 29.41320 * 19 18 17 21 21 C 1.38804 * 120.00203 * 209.41641 * 19 18 17 22 22 N 1.31622 * 120.00104 * 11.66718 * 21 19 18 23 23 Si 1.86808 * 120.00188 * 191.66644 * 21 19 18 24 24 H 1.48505 * 109.46803 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46914 * 120.00141 * 23 21 19 26 26 H 1.48501 * 109.47153 * 239.99942 * 23 21 19 27 27 C 1.47745 * 116.73009 * 97.43454 * 18 17 16 28 28 C 1.47766 * 121.63039 * 175.15069 * 10 8 4 29 29 H 1.09000 * 109.46445 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47736 * 300.00223 * 1 2 3 31 31 H 1.09006 * 109.46802 * 60.00347 * 1 2 3 32 32 H 1.08998 * 109.48018 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47345 * 119.99459 * 2 1 3 34 34 H 1.08996 * 109.46987 * 55.44716 * 6 4 3 35 35 H 1.08992 * 109.46819 * 175.44732 * 6 4 3 36 36 H 1.09000 * 109.46912 * 66.71299 * 7 6 4 37 37 H 1.09006 * 109.46755 * 186.71602 * 7 6 4 38 38 H 1.08997 * 109.47218 * 306.71444 * 7 6 4 39 39 H 1.09005 * 109.57196 * 31.54581 * 11 10 8 40 40 H 1.09001 * 109.57053 * 151.80054 * 11 10 8 41 41 H 1.09000 * 109.47902 * 65.12777 * 12 11 10 42 42 H 1.09000 * 109.47736 * 185.14931 * 12 11 10 43 43 H 0.97002 * 120.95579 * 0.28902 * 15 13 12 44 44 H 1.09003 * 109.53743 * 340.28453 * 16 15 13 45 45 H 1.09007 * 109.60261 * 220.08608 * 16 15 13 46 46 H 1.08994 * 109.58440 * 181.60735 * 17 16 15 47 47 H 1.08999 * 109.69845 * 61.25784 * 17 16 15 48 48 H 0.97003 * 120.00070 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.57810 * 105.89104 * 27 18 17 50 50 H 1.09001 * 109.57849 * 345.49608 * 27 18 17 51 51 H 1.09001 * 109.57702 * 169.82800 * 28 10 8 52 52 H 1.09000 * 109.57979 * 290.22635 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4259 1.4620 -0.1169 5 1 3.8868 0.4968 0.0927 6 6 3.7868 1.9018 -1.5372 7 6 3.3761 0.8112 -2.5287 8 6 3.9301 2.4843 0.8688 9 8 3.1494 3.2274 1.4247 10 7 5.2489 2.5726 1.1328 11 6 6.2197 1.6187 0.5581 12 6 6.3434 0.4125 1.4910 13 6 6.6959 0.8856 2.8779 14 8 7.7602 1.4297 3.0832 15 7 5.8182 0.6988 3.8929 16 6 6.1945 1.1792 5.2317 17 6 5.5030 2.5185 5.4951 18 7 5.9119 3.4793 4.4495 19 6 7.0897 4.1728 4.5323 20 1 7.9357 3.7409 5.0464 21 6 7.1964 5.4309 3.9556 22 7 6.1172 6.0551 3.5336 23 14 8.8717 6.2383 3.7785 24 1 9.9164 5.3359 4.3260 25 1 9.1462 6.4988 2.3426 26 1 8.8842 7.5216 4.5256 27 6 4.9874 3.6553 3.3105 28 6 5.7944 3.6284 2.0109 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2612 2.8264 -1.7759 35 1 4.8620 2.0675 -1.6041 36 1 2.2894 0.7285 -2.5482 37 1 3.7389 1.0694 -3.5236 38 1 3.8075 -0.1411 -2.2205 39 1 5.8718 1.2890 -0.4209 40 1 7.1910 2.1029 0.4565 41 1 5.3940 -0.1221 1.5217 42 1 7.1238 -0.2534 1.1226 43 1 4.9661 0.2606 3.7414 44 1 7.2754 1.3111 5.2812 45 1 5.8811 0.4534 5.9821 46 1 5.7987 2.8960 6.4739 47 1 4.4215 2.3855 5.4663 48 1 6.1918 6.9342 3.1303 49 1 4.4735 4.6122 3.4017 50 1 4.2576 2.8457 3.3040 51 1 6.8395 3.4139 2.2343 52 1 5.7163 4.5946 1.5124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131334415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:00 Heat of formation + Delta-G solvation = -77.225092 kcal Electronic energy + Delta-G solvation = -33950.488044 eV Core-core repulsion = 29758.751143 eV Total energy + Delta-G solvation = -4191.736901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.18968 -38.99048 -37.67736 -35.81530 -35.39710 -33.89939 -33.47949 -31.32908 -31.12975 -30.43858 -29.32399 -27.51002 -26.05418 -24.43559 -23.64347 -22.94824 -22.39195 -21.52537 -20.17516 -19.77469 -18.78278 -17.38059 -16.93861 -16.47530 -16.32154 -15.90279 -15.57879 -15.08162 -14.91646 -14.53809 -14.27829 -14.22911 -13.85465 -13.67128 -13.31659 -13.21616 -13.15060 -12.82482 -12.65542 -12.57090 -12.47065 -12.35556 -12.10355 -11.77395 -11.69423 -11.56017 -11.37028 -11.33735 -11.16077 -11.06226 -10.83061 -10.76882 -10.44799 -10.23465 -9.94756 -9.87710 -9.69334 -9.61997 -9.14138 -8.84396 -8.68807 -8.27840 -8.03288 -6.44828 -5.53082 -3.08410 3.02858 3.07974 3.28996 3.45954 3.54038 3.58302 3.83227 3.88266 4.58530 4.62543 4.69579 4.76030 4.92507 4.95064 5.03288 5.05397 5.15424 5.19449 5.30907 5.32361 5.46495 5.47389 5.54198 5.57096 5.58659 5.67296 5.75002 5.78229 5.85049 5.89983 6.01455 6.06552 6.10211 6.16149 6.24506 6.53375 6.62535 6.66119 6.81180 6.98210 7.05731 7.11955 7.15931 7.57517 7.84053 7.99959 8.09434 8.16775 8.52864 8.72329 8.91424 9.36194 9.95947 10.58115 11.45456 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004337 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.590224 B = 6454.893289 C = 6845.622057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.075 3.925 5 H 0.078 0.922 6 C -0.139 4.139 7 C -0.150 4.150 8 C 0.505 3.495 9 O -0.508 6.508 10 N -0.615 5.615 11 C 0.110 3.890 12 C -0.160 4.160 13 C 0.520 3.480 14 O -0.516 6.516 15 N -0.722 5.722 16 C 0.089 3.911 17 C 0.126 3.874 18 N -0.588 5.588 19 C -0.223 4.223 20 H 0.063 0.937 21 C 0.000 4.000 22 N -0.900 5.900 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.173 3.827 28 C 0.116 3.884 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.390 0.610 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.039 0.961 48 H 0.250 0.750 49 H 0.064 0.936 50 H 0.028 0.972 51 H 0.103 0.897 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 -17.332 -9.860 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.014 3.986 5 H 0.096 0.904 6 C -0.177 4.177 7 C -0.207 4.207 8 C 0.291 3.709 9 O -0.382 6.382 10 N -0.351 5.351 11 C -0.015 4.015 12 C -0.201 4.201 13 C 0.305 3.695 14 O -0.390 6.390 15 N -0.374 5.374 16 C -0.038 4.038 17 C -0.002 4.002 18 N -0.311 5.311 19 C -0.353 4.353 20 H 0.080 0.920 21 C -0.198 4.198 22 N -0.546 5.546 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.048 3.952 28 C -0.005 4.005 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.222 0.778 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.046 0.954 51 H 0.122 0.878 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.905 -16.152 -9.445 19.621 hybrid contribution 0.688 -0.014 -0.363 0.778 sum -5.218 -16.166 -9.808 19.615 Atomic orbital electron populations 1.21718 0.93647 1.01957 1.03424 1.22649 0.95886 0.84096 0.99851 1.88067 1.19041 1.25721 1.94315 1.22059 0.83412 0.98362 0.94808 0.90422 1.21970 1.02150 1.00590 0.92974 1.21799 1.01946 0.98035 0.98956 1.20290 0.82233 0.85385 0.83000 1.90744 1.54564 1.42820 1.50044 1.49140 1.05228 1.31641 1.49132 1.21830 0.95044 0.89495 0.95091 1.22222 1.02998 0.99586 0.95317 1.20229 0.84557 0.78838 0.85873 1.90745 1.23836 1.40794 1.83622 1.46014 1.20125 1.61434 1.09794 1.22321 1.02657 0.96870 0.81923 1.21447 0.95919 0.89547 0.93266 1.44538 1.21715 1.46071 1.18782 1.18934 0.88442 0.95153 1.32744 0.91951 1.25067 0.96345 0.95937 1.02433 1.70029 1.25843 1.13791 1.44913 0.86317 0.84729 0.79150 0.77310 1.20314 1.21889 1.22009 1.21216 0.90258 0.99202 0.84519 1.22705 1.00177 0.87188 0.90404 0.91276 0.91566 0.91892 0.93205 0.93555 0.90264 0.90160 0.92138 0.92197 0.92852 0.90118 0.88996 0.91105 0.88081 0.77769 0.89609 0.92912 0.93095 0.94249 0.94008 0.91820 0.95398 0.87847 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.52 6.04 37.16 0.22 0.74 16 3 O -0.35 -5.01 9.28 -54.78 -0.51 -5.52 16 4 C 0.08 0.98 1.85 -27.88 -0.05 0.93 16 5 H 0.08 0.80 6.17 -51.93 -0.32 0.48 16 6 C -0.14 -1.53 5.31 -26.73 -0.14 -1.67 16 7 C -0.15 -1.23 8.73 37.16 0.32 -0.90 16 8 C 0.51 9.07 6.46 -10.98 -0.07 9.00 16 9 O -0.51 -11.66 14.70 -13.99 -0.21 -11.86 16 10 N -0.61 -10.86 2.44 -171.66 -0.42 -11.28 16 11 C 0.11 1.46 5.15 -3.37 -0.02 1.45 16 12 C -0.16 -1.94 6.15 -27.88 -0.17 -2.11 16 13 C 0.52 8.83 4.74 -10.66 -0.05 8.78 16 14 O -0.52 -11.13 14.91 5.56 0.08 -11.04 16 15 N -0.72 -11.34 4.77 -59.67 -0.28 -11.63 16 16 C 0.09 1.52 6.57 -3.69 -0.02 1.50 16 17 C 0.13 2.58 6.08 -3.34 -0.02 2.56 16 18 N -0.59 -14.53 2.26 -171.19 -0.39 -14.92 16 19 C -0.22 -6.10 8.34 -15.06 -0.13 -6.22 16 20 H 0.06 1.77 7.86 -52.48 -0.41 1.36 16 21 C 0.00 0.01 4.45 -17.43 -0.08 -0.07 16 22 N -0.90 -26.43 10.09 55.49 0.56 -25.87 16 23 Si 0.89 22.57 29.57 -169.99 -5.03 17.54 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C 0.17 4.29 3.59 -3.36 -0.01 4.28 16 28 C 0.12 2.66 3.89 -3.35 -0.01 2.65 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.40 6.48 -51.93 -0.34 0.06 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.82 6.07 -51.93 -0.32 0.50 16 36 H 0.06 0.52 7.14 -51.93 -0.37 0.15 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 39 H 0.08 0.79 4.88 -51.93 -0.25 0.54 16 40 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 41 H 0.07 0.70 7.10 -51.93 -0.37 0.33 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.39 5.12 8.71 -40.82 -0.36 4.76 16 44 H 0.09 1.71 7.02 -51.93 -0.36 1.35 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 47 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.06 1.89 6.68 -51.93 -0.35 1.55 16 50 H 0.03 0.67 5.83 -51.93 -0.30 0.36 16 51 H 0.10 2.60 4.59 -51.93 -0.24 2.36 16 52 H 0.06 1.53 7.62 -51.93 -0.40 1.13 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -35.11 388.41 -8.73 -43.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.55 Total: 4.93 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 0.15 Total: 19.96 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.53 Total: -63.70 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.63 Total: -28.43 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.11 -8.73 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131334415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.382 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds