Wall clock time and date at job start Wed Apr 1 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46983 * 2 1 4 4 C 1.42906 * 114.00341 * 185.13803 * 3 2 1 5 5 H 1.08994 * 109.46712 * 344.38958 * 4 3 2 6 6 C 1.53003 * 109.47019 * 104.38888 * 4 3 2 7 7 C 1.53004 * 109.47011 * 295.44777 * 6 4 3 8 8 C 1.50694 * 109.46984 * 224.38764 * 4 3 2 9 9 O 1.21276 * 120.00749 * 346.69176 * 8 4 3 10 10 N 1.34789 * 119.99652 * 166.68759 * 8 4 3 11 11 C 1.47739 * 121.63021 * 355.16854 * 10 8 4 12 12 C 1.52992 * 108.96052 * 271.67730 * 11 10 8 13 13 C 1.50716 * 109.42298 * 305.26736 * 12 11 10 14 14 O 1.21279 * 120.12424 * 295.13207 * 13 12 11 15 15 N 1.35483 * 119.64151 * 115.17759 * 13 12 11 16 16 C 1.47131 * 118.09941 * 180.26795 * 15 13 12 17 17 C 1.53006 * 109.07987 * 100.16690 * 16 15 13 18 18 N 1.47777 * 108.79654 * 301.39982 * 17 16 15 19 19 C 1.36937 * 121.63581 * 277.41323 * 18 17 16 20 20 H 1.08007 * 119.99575 * 29.41320 * 19 18 17 21 21 C 1.38804 * 120.00203 * 209.41641 * 19 18 17 22 22 N 1.31622 * 120.00104 * 11.66718 * 21 19 18 23 23 Si 1.86808 * 120.00188 * 191.66644 * 21 19 18 24 24 H 1.48505 * 109.46803 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46914 * 120.00141 * 23 21 19 26 26 H 1.48501 * 109.47153 * 239.99942 * 23 21 19 27 27 C 1.47745 * 116.73009 * 97.43454 * 18 17 16 28 28 C 1.47766 * 121.63039 * 175.15069 * 10 8 4 29 29 H 1.09000 * 109.46445 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47736 * 300.00223 * 1 2 3 31 31 H 1.09006 * 109.46802 * 60.00347 * 1 2 3 32 32 H 1.08998 * 109.48018 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47345 * 119.99459 * 2 1 3 34 34 H 1.08996 * 109.46987 * 55.44716 * 6 4 3 35 35 H 1.08992 * 109.46819 * 175.44732 * 6 4 3 36 36 H 1.09000 * 109.46912 * 66.71299 * 7 6 4 37 37 H 1.09006 * 109.46755 * 186.71602 * 7 6 4 38 38 H 1.08997 * 109.47218 * 306.71444 * 7 6 4 39 39 H 1.09005 * 109.57196 * 31.54581 * 11 10 8 40 40 H 1.09001 * 109.57053 * 151.80054 * 11 10 8 41 41 H 1.09000 * 109.47902 * 65.12777 * 12 11 10 42 42 H 1.09000 * 109.47736 * 185.14931 * 12 11 10 43 43 H 0.97002 * 120.95579 * 0.28902 * 15 13 12 44 44 H 1.09003 * 109.53743 * 340.28453 * 16 15 13 45 45 H 1.09007 * 109.60261 * 220.08608 * 16 15 13 46 46 H 1.08994 * 109.58440 * 181.60735 * 17 16 15 47 47 H 1.08999 * 109.69845 * 61.25784 * 17 16 15 48 48 H 0.97003 * 120.00070 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.57810 * 105.89104 * 27 18 17 50 50 H 1.09001 * 109.57849 * 345.49608 * 27 18 17 51 51 H 1.09001 * 109.57702 * 169.82800 * 28 10 8 52 52 H 1.09000 * 109.57979 * 290.22635 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4259 1.4620 -0.1169 5 1 3.8868 0.4968 0.0927 6 6 3.7868 1.9018 -1.5372 7 6 3.3761 0.8112 -2.5287 8 6 3.9301 2.4843 0.8688 9 8 3.1494 3.2274 1.4247 10 7 5.2489 2.5726 1.1328 11 6 6.2197 1.6187 0.5581 12 6 6.3434 0.4125 1.4910 13 6 6.6959 0.8856 2.8779 14 8 7.7602 1.4297 3.0832 15 7 5.8182 0.6988 3.8929 16 6 6.1945 1.1792 5.2317 17 6 5.5030 2.5185 5.4951 18 7 5.9119 3.4793 4.4495 19 6 7.0897 4.1728 4.5323 20 1 7.9357 3.7409 5.0464 21 6 7.1964 5.4309 3.9556 22 7 6.1172 6.0551 3.5336 23 14 8.8717 6.2383 3.7785 24 1 9.9164 5.3359 4.3260 25 1 9.1462 6.4988 2.3426 26 1 8.8842 7.5216 4.5256 27 6 4.9874 3.6553 3.3105 28 6 5.7944 3.6284 2.0109 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2612 2.8264 -1.7759 35 1 4.8620 2.0675 -1.6041 36 1 2.2894 0.7285 -2.5482 37 1 3.7389 1.0694 -3.5236 38 1 3.8075 -0.1411 -2.2205 39 1 5.8718 1.2890 -0.4209 40 1 7.1910 2.1029 0.4565 41 1 5.3940 -0.1221 1.5217 42 1 7.1238 -0.2534 1.1226 43 1 4.9661 0.2606 3.7414 44 1 7.2754 1.3111 5.2812 45 1 5.8811 0.4534 5.9821 46 1 5.7987 2.8960 6.4739 47 1 4.4215 2.3855 5.4663 48 1 6.1918 6.9342 3.1303 49 1 4.4735 4.6122 3.4017 50 1 4.2576 2.8457 3.3040 51 1 6.8395 3.4139 2.2343 52 1 5.7163 4.5946 1.5124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131334415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:59 Heat of formation + Delta-G solvation = -102.693267 kcal Electronic energy + Delta-G solvation = -33951.592427 eV Core-core repulsion = 29758.751143 eV Total energy + Delta-G solvation = -4192.841284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53124 -40.28915 -38.84746 -37.62254 -36.83715 -35.35319 -34.47076 -33.19437 -31.92859 -31.86206 -30.91765 -28.86895 -27.67250 -25.99463 -25.09178 -23.95678 -23.50835 -22.61253 -22.01311 -21.16295 -20.13291 -18.73116 -18.25664 -18.08099 -17.55471 -17.26030 -16.69259 -16.62406 -16.43416 -16.21286 -15.48295 -15.41808 -15.18185 -15.04880 -14.94473 -14.58195 -14.55205 -14.27227 -13.90670 -13.73744 -13.31187 -13.27421 -13.20708 -13.11573 -13.04495 -12.95173 -12.83873 -12.71742 -12.40499 -12.28176 -12.15861 -12.10123 -11.99245 -11.86085 -11.79123 -11.66217 -11.57803 -10.83117 -10.70617 -10.50994 -10.16127 -9.88789 -9.59895 -8.51336 -7.68708 -5.26678 1.40137 1.43067 1.53504 1.65972 1.81155 2.00657 2.52235 2.63574 2.87185 3.37571 3.48175 3.68905 3.80415 3.86495 3.93242 4.08098 4.24506 4.25578 4.34334 4.38663 4.43224 4.49938 4.52344 4.55773 4.58150 4.66191 4.70207 4.74610 4.81644 4.84674 4.85953 4.90381 4.99966 5.06171 5.08111 5.13178 5.19667 5.22847 5.29857 5.33257 5.42671 5.66200 5.75996 5.79790 5.86585 6.22808 6.39996 6.63267 6.86773 7.20231 7.30735 7.65371 7.88742 8.46982 9.26289 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004337 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.590224 B = 6454.893289 C = 6845.622057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.387 6.387 4 C 0.088 3.912 5 H 0.119 0.881 6 C -0.138 4.138 7 C -0.144 4.144 8 C 0.499 3.501 9 O -0.570 6.570 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.150 4.150 13 C 0.508 3.492 14 O -0.568 6.568 15 N -0.716 5.716 16 C 0.103 3.897 17 C 0.119 3.881 18 N -0.600 5.600 19 C -0.213 4.213 20 H 0.052 0.948 21 C -0.046 4.046 22 N -0.929 5.929 23 Si 0.947 3.053 24 H -0.273 1.273 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.197 3.803 28 C 0.142 3.858 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.406 0.594 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.048 0.952 48 H 0.242 0.758 49 H 0.006 0.994 50 H 0.035 0.965 51 H 0.084 0.916 52 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -21.770 -11.647 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.306 6.306 4 C 0.027 3.973 5 H 0.137 0.863 6 C -0.176 4.176 7 C -0.201 4.201 8 C 0.288 3.712 9 O -0.448 6.448 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.191 4.191 13 C 0.295 3.705 14 O -0.446 6.446 15 N -0.368 5.368 16 C -0.024 4.024 17 C -0.007 4.007 18 N -0.324 5.324 19 C -0.344 4.344 20 H 0.070 0.930 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.777 3.223 24 H -0.198 1.198 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.071 3.929 28 C 0.019 3.981 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.147 0.853 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.155 0.845 43 H 0.242 0.758 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.023 0.977 50 H 0.053 0.947 51 H 0.102 0.898 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.910 -20.681 -11.241 24.269 hybrid contribution 0.611 1.323 0.250 1.478 sum -5.299 -19.358 -10.991 22.883 Atomic orbital electron populations 1.21762 0.93409 1.03403 1.02211 1.22952 0.96231 0.82410 1.01683 1.88059 1.19431 1.28653 1.94437 1.22047 0.83527 0.97992 0.93782 0.86305 1.21991 1.02432 1.00689 0.92442 1.21775 1.01883 0.97910 0.98515 1.21414 0.81416 0.85594 0.82819 1.90721 1.56116 1.45481 1.52491 1.49047 1.06317 1.31151 1.48277 1.22163 0.93439 0.88811 0.97387 1.22264 1.06108 0.99361 0.91355 1.21190 0.83785 0.77771 0.87753 1.90730 1.26111 1.43136 1.84650 1.46005 1.20800 1.60842 1.09177 1.21996 1.00413 0.95906 0.84091 1.21684 0.96786 0.90370 0.91896 1.44679 1.20873 1.46835 1.19979 1.18951 0.89062 0.94920 1.31511 0.93023 1.25616 0.98794 0.96670 1.03055 1.70218 1.27379 1.13738 1.46283 0.85485 0.81754 0.78183 0.76880 1.19828 1.22110 1.22069 1.20754 0.90105 0.96295 0.85699 1.21931 0.98755 0.87206 0.90186 0.88456 0.93646 0.92297 0.90290 0.92526 0.93083 0.89126 0.92591 0.91078 0.90141 0.85305 0.90507 0.87525 0.84524 0.75831 0.92463 0.88371 0.93565 0.93404 0.94880 0.97652 0.94652 0.89766 0.96735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.04 0.70 6.04 71.98 0.43 1.13 16 3 O -0.39 -10.15 9.28 -130.29 -1.21 -11.36 16 4 C 0.09 2.02 1.85 29.85 0.06 2.07 16 5 H 0.12 1.72 6.17 -2.39 -0.01 1.71 16 6 C -0.14 -2.62 5.31 30.60 0.16 -2.46 16 7 C -0.14 -1.67 8.73 71.98 0.63 -1.04 16 8 C 0.50 17.64 6.46 87.65 0.57 18.21 16 9 O -0.57 -27.18 14.70 15.67 0.23 -26.95 16 10 N -0.61 -21.33 2.44 -815.39 -1.99 -23.32 16 11 C 0.10 2.46 5.15 86.14 0.44 2.90 16 12 C -0.15 -2.97 6.15 29.85 0.18 -2.79 16 13 C 0.51 16.20 4.74 87.55 0.42 16.61 16 14 O -0.57 -24.32 14.91 -3.03 -0.05 -24.36 16 15 N -0.72 -20.80 4.77 -460.67 -2.20 -23.00 16 16 C 0.10 3.37 6.57 86.26 0.57 3.94 16 17 C 0.12 4.88 6.08 86.14 0.52 5.41 16 18 N -0.60 -30.69 2.26 -695.53 -1.57 -32.26 16 19 C -0.21 -12.13 8.34 84.03 0.70 -11.43 16 20 H 0.05 3.03 7.86 -2.91 -0.02 3.00 16 21 C -0.05 -2.71 4.45 84.86 0.38 -2.33 16 22 N -0.93 -57.81 10.09 21.65 0.22 -57.59 16 23 Si 0.95 48.17 29.57 68.60 2.03 50.20 16 24 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 26 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 27 C 0.20 10.24 3.59 86.14 0.31 10.55 16 28 C 0.14 6.85 3.89 86.14 0.33 7.19 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 0.82 6.48 -2.39 -0.02 0.81 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.50 6.07 -2.39 -0.01 1.49 16 36 H 0.06 0.73 7.14 -2.39 -0.02 0.71 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 39 H 0.13 1.84 4.88 -2.38 -0.01 1.83 16 40 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 41 H 0.11 1.39 7.10 -2.39 -0.02 1.37 16 42 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.41 9.18 8.71 -92.71 -0.81 8.37 16 44 H 0.06 2.26 7.02 -2.39 -0.02 2.25 16 45 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 47 H 0.05 1.86 7.75 -2.39 -0.02 1.84 16 48 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.01 0.35 6.68 -2.39 -0.02 0.34 16 50 H 0.04 1.75 5.83 -2.39 -0.01 1.73 16 51 H 0.08 4.41 4.59 -2.39 -0.01 4.40 16 52 H 0.01 0.81 7.62 -2.39 -0.02 0.79 16 Total: -1.00 -86.67 388.41 2.02 -84.65 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.12 Total: 17.61 kcal Atomic # 6 Polarization: 39.95 SS G_CDS: 6.44 Total: 46.39 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -5.55 Total: -136.17 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -1.02 Total: -62.67 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -86.67 2.02 -84.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131334415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.044 kcal (2) G-P(sol) polarization free energy of solvation -86.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds