Wall clock time and date at job start Wed Apr 1 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46660 * 2 1 4 4 H 1.08997 * 109.47585 * 55.00279 * 3 2 1 5 5 C 1.53002 * 109.47290 * 294.99882 * 3 2 1 6 6 C 1.50708 * 109.46630 * 175.00301 * 3 2 1 7 7 O 1.21280 * 120.00135 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99471 * 180.02562 * 6 3 2 9 9 C 1.46508 * 119.99538 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.46698 * 179.97438 * 9 8 6 11 11 H 1.09001 * 108.98191 * 58.85165 * 10 9 8 12 12 C 1.50733 * 108.93077 * 177.66666 * 10 9 8 13 13 N 1.47602 * 108.45407 * 213.95342 * 12 10 9 14 14 C 1.46904 * 111.00216 * 152.98656 * 13 12 10 15 15 C 1.50697 * 109.46892 * 194.48976 * 14 13 12 16 16 O 1.21291 * 120.00763 * 359.72740 * 15 14 13 17 17 N 1.34784 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99968 * 179.72830 * 17 15 14 19 19 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00272 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99631 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47423 * 89.99791 * 22 20 18 24 24 H 1.48505 * 109.46968 * 209.99733 * 22 20 18 25 25 H 1.48504 * 109.47133 * 329.99196 * 22 20 18 26 26 C 1.40467 * 114.42559 * 279.56317 * 13 12 10 27 27 C 1.54398 * 111.44796 * 61.24692 * 26 13 12 28 28 C 1.50728 * 109.13228 * 284.56855 * 27 26 13 29 29 O 1.43931 * 109.00204 * 299.99810 * 10 9 8 30 30 H 1.08998 * 109.46951 * 299.99276 * 1 2 3 31 31 H 1.09001 * 109.47339 * 59.99752 * 1 2 3 32 32 H 1.09001 * 109.46980 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46967 * 240.00455 * 2 1 3 34 34 H 1.08995 * 109.47738 * 120.00157 * 2 1 3 35 35 H 1.09001 * 109.47428 * 300.00282 * 5 3 2 36 36 H 1.09001 * 109.46659 * 60.00527 * 5 3 2 37 37 H 1.08994 * 109.46992 * 180.02562 * 5 3 2 38 38 H 0.96992 * 120.00041 * 359.97438 * 8 6 3 39 39 H 1.09001 * 109.47323 * 60.00100 * 9 8 6 40 40 H 1.09000 * 109.47050 * 300.00049 * 9 8 6 41 41 H 1.08996 * 109.64280 * 94.26097 * 12 10 9 42 42 H 1.09004 * 109.64090 * 333.63680 * 12 10 9 43 43 H 1.09001 * 109.46900 * 74.49636 * 14 13 12 44 44 H 1.08993 * 109.47169 * 314.49357 * 14 13 12 45 45 H 0.97005 * 119.99846 * 359.72750 * 17 15 14 46 46 H 0.97000 * 119.99725 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.08761 * 181.75397 * 26 13 12 48 48 H 1.08999 * 109.08406 * 300.74158 * 26 13 12 49 49 H 1.09001 * 109.52585 * 44.46361 * 27 26 13 50 50 H 1.08998 * 109.52147 * 164.67293 * 27 26 13 51 51 H 1.08999 * 108.80393 * 212.39752 * 28 27 26 52 52 H 1.09002 * 108.80693 * 330.65712 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3952 0.2036 8 7 4.2148 2.6120 0.1457 9 6 5.6749 2.6137 0.2655 10 6 6.1848 4.0563 0.2656 11 1 5.7301 4.5930 1.0983 12 6 7.6812 4.0460 0.4470 13 7 8.0650 5.2362 1.2310 14 6 9.3084 4.9975 1.9759 15 6 9.4811 6.0689 3.0215 16 8 8.6527 6.9480 3.1318 17 7 10.5588 6.0532 3.8308 18 6 10.7188 7.0310 4.7783 19 1 9.9815 7.8142 4.8760 20 6 11.8295 7.0145 5.6131 21 7 11.9831 7.9520 6.5210 22 14 13.1050 5.6603 5.4437 23 1 14.1488 6.0816 4.4752 24 1 13.7314 5.4021 6.7652 25 1 12.4489 4.4204 4.9563 26 6 8.1458 6.4228 0.4836 27 6 6.7844 6.7865 -0.1475 28 6 6.5283 5.8813 -1.3251 29 8 5.7982 4.6901 -0.9675 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0697 1.5876 -2.1492 36 1 0.5488 2.1253 -1.3968 37 1 1.9988 3.1541 -1.3075 38 1 3.7324 3.4510 0.0815 39 1 6.1093 2.0753 -0.5769 40 1 5.9637 2.1257 1.1964 41 1 8.1685 4.0764 -0.5275 42 1 7.9793 3.1438 0.9811 43 1 10.1540 5.0212 1.2884 44 1 9.2606 4.0220 2.4596 45 1 11.2212 5.3500 3.7429 46 1 12.7587 7.9406 7.1035 47 1 8.4638 7.2349 1.1374 48 1 8.8833 6.2953 -0.3089 49 1 5.9938 6.6556 0.5914 50 1 6.8036 7.8235 -0.4824 51 1 5.9581 6.4315 -2.0737 52 1 7.4848 5.5902 -1.7592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149169125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:51 Heat of formation + Delta-G solvation = -114.268317 kcal Electronic energy + Delta-G solvation = -30496.474945 eV Core-core repulsion = 26303.131729 eV Total energy + Delta-G solvation = -4193.343216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40081 -39.82110 -38.34396 -36.18761 -35.74550 -35.03676 -33.95155 -32.67903 -31.72750 -30.69159 -29.80772 -27.34310 -26.79972 -25.59649 -24.62827 -23.40341 -21.86882 -21.10058 -20.61365 -19.83095 -19.39611 -18.37525 -17.43258 -17.31488 -16.57888 -16.11342 -15.94005 -15.70596 -15.24240 -15.04853 -14.76903 -14.69093 -14.37455 -14.11623 -13.90454 -13.81010 -13.46565 -13.29320 -13.07100 -12.89183 -12.72894 -12.54425 -12.43589 -12.31471 -12.11372 -11.96194 -11.91969 -11.73236 -11.46081 -11.30495 -11.16461 -11.06825 -10.99482 -10.99261 -10.64156 -10.45764 -10.01771 -9.89146 -9.63159 -9.56367 -9.21879 -8.65041 -8.23014 -7.97116 -6.35270 -3.86849 2.49610 2.96132 2.99622 3.03580 3.12488 3.46550 3.67250 3.78004 4.06570 4.38811 4.46647 4.58700 4.60360 4.68084 4.78230 4.91127 4.97651 4.98703 5.04907 5.08519 5.15720 5.16932 5.22351 5.30065 5.30559 5.38492 5.45517 5.47523 5.53590 5.55780 5.56810 5.63320 5.69141 5.73675 5.76257 5.84947 5.88196 5.92804 5.97617 6.03972 6.24381 6.27127 6.31980 6.97661 7.10514 7.34570 7.50377 7.53664 8.07081 8.09695 8.55211 8.90544 9.37728 9.77545 10.77644 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.002099 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.487047 B =13334.290095 C =14228.530968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.515 3.485 7 O -0.545 6.545 8 N -0.721 5.721 9 C 0.128 3.872 10 C 0.083 3.917 11 H 0.085 0.915 12 C 0.034 3.966 13 N -0.529 5.529 14 C 0.048 3.952 15 C 0.450 3.550 16 O -0.559 6.559 17 N -0.589 5.589 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.059 3.941 27 C -0.151 4.151 28 C 0.064 3.936 29 O -0.391 6.391 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.405 0.595 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.109 0.891 48 H 0.013 0.987 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -11.826 -17.352 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.203 4.203 6 C 0.301 3.699 7 O -0.422 6.422 8 N -0.372 5.372 9 C 0.003 3.997 10 C 0.025 3.975 11 H 0.103 0.897 12 C -0.094 4.094 13 N -0.253 5.253 14 C -0.082 4.082 15 C 0.236 3.764 16 O -0.442 6.442 17 N -0.228 5.228 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.070 4.070 27 C -0.189 4.189 28 C -0.012 4.012 29 O -0.311 6.311 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.127 0.873 48 H 0.031 0.969 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.104 0.896 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.838 -11.865 -16.843 26.608 hybrid contribution 1.914 -0.521 -0.375 2.019 sum -14.924 -12.387 -17.218 25.935 Atomic orbital electron populations 1.21848 0.95501 1.01886 1.01888 1.21339 0.95308 0.94201 1.03481 1.21357 0.91807 0.99445 1.00658 0.88487 1.21828 1.02256 1.00413 0.95782 1.20703 0.90041 0.83472 0.75639 1.90694 1.70413 1.31485 1.49639 1.45899 1.07594 1.09017 1.74726 1.21498 0.80325 0.95117 1.02719 1.22159 0.94768 0.92448 0.88127 0.89703 1.22351 0.95356 0.94199 0.97533 1.58590 1.34152 1.02317 1.30265 1.21881 0.90573 0.99777 0.96013 1.19644 0.83616 0.88265 0.84908 1.90521 1.43171 1.38662 1.71807 1.42221 1.21270 1.26453 1.32887 1.19417 1.08819 1.05448 1.09702 0.86252 1.25046 0.97640 0.97374 0.96072 1.69619 1.29499 1.32811 1.20036 0.86677 0.82186 0.81771 0.78789 1.19658 1.20131 1.19464 1.21397 0.95355 0.94008 0.96198 1.22039 0.99041 0.99821 0.97979 1.22400 0.96476 0.85493 0.96822 1.88210 1.61262 1.41053 1.40590 0.92668 0.92438 0.92501 0.91379 0.91128 0.92105 0.91223 0.91951 0.75996 0.91015 0.89899 0.93078 0.89234 0.93150 0.89058 0.79699 0.91572 0.87285 0.96943 0.89710 0.90072 0.89609 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.11 -0.84 4.75 -26.73 -0.13 -0.96 16 3 C -0.11 -0.85 2.73 -91.77 -0.25 -1.10 16 4 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -0.89 8.85 37.16 0.33 -0.56 16 6 C 0.52 5.60 7.15 -10.98 -0.08 5.52 16 7 O -0.55 -8.01 15.92 5.56 0.09 -7.92 16 8 N -0.72 -7.00 5.33 -60.28 -0.32 -7.32 16 9 C 0.13 1.34 5.12 -4.04 -0.02 1.31 16 10 C 0.08 0.91 2.33 -27.87 -0.06 0.84 16 11 H 0.09 1.05 7.26 -51.93 -0.38 0.67 16 12 C 0.03 0.39 4.86 -4.57 -0.02 0.36 16 13 N -0.53 -7.79 3.80 -241.05 -0.92 -8.70 16 14 C 0.05 0.76 5.45 -4.98 -0.03 0.74 16 15 C 0.45 9.76 7.41 -10.98 -0.08 9.68 16 16 O -0.56 -14.22 13.90 5.55 0.08 -14.14 16 17 N -0.59 -13.60 5.09 -10.96 -0.06 -13.65 16 18 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 19 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 22 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 26 C 0.06 0.87 4.64 -6.43 -0.03 0.84 16 27 C -0.15 -1.81 5.67 -27.14 -0.15 -1.96 16 28 C 0.06 0.66 6.26 36.02 0.23 0.89 16 29 O -0.39 -4.33 10.27 -35.23 -0.36 -4.69 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 37 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 38 H 0.41 3.28 7.76 -40.82 -0.32 2.97 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 41 H 0.05 0.57 6.85 -51.93 -0.36 0.21 16 42 H 0.09 0.91 7.08 -51.93 -0.37 0.54 16 43 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 44 H 0.09 1.25 7.68 -51.93 -0.40 0.85 16 45 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.11 2.01 5.55 -51.93 -0.29 1.73 16 48 H 0.01 0.17 7.63 -51.93 -0.40 -0.22 16 49 H 0.08 1.13 7.25 -51.93 -0.38 0.75 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.05 0.47 6.61 -51.93 -0.34 0.13 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -33.33 402.33 -8.28 -41.61 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.72 Total: 11.48 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.19 Total: 7.52 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.52 Total: -54.25 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.20 Total: -26.75 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.33 -8.28 -41.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149169125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.659 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds