Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 C 1.50694 * 109.47224 * 119.99977 * 2 1 3 5 5 O 1.21279 * 120.00417 * 350.64169 * 4 2 1 6 6 N 1.34781 * 119.99928 * 170.63257 * 4 2 1 7 7 C 1.46499 * 119.99679 * 355.03013 * 6 4 2 8 8 C 1.46499 * 120.00104 * 175.02974 * 6 4 2 9 9 C 1.50706 * 109.46877 * 270.00211 * 8 6 4 10 10 O 1.21278 * 120.00057 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99930 * 179.97438 * 9 8 6 12 12 C 1.46501 * 120.00191 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47307 * 180.02562 * 12 11 9 14 14 H 1.08999 * 108.57302 * 59.99878 * 13 12 11 15 15 C 1.46918 * 108.50950 * 177.88778 * 13 12 11 16 16 N 1.50117 * 106.77815 * 177.83977 * 15 13 12 17 17 C 1.36940 * 120.63628 * 111.31888 * 16 15 13 18 18 H 1.08008 * 119.99750 * 152.71824 * 17 16 15 19 19 C 1.38808 * 119.99982 * 332.71130 * 17 16 15 20 20 N 1.31616 * 120.00374 * 342.47414 * 19 17 16 21 21 Si 1.86806 * 119.99590 * 162.46844 * 19 17 16 22 22 H 1.48492 * 109.47351 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46940 * 120.00387 * 21 19 17 24 24 H 1.48501 * 109.46902 * 240.00023 * 21 19 17 25 25 C 1.43428 * 118.72837 * 291.34256 * 16 15 13 26 26 C 1.55324 * 116.23949 * 89.35078 * 25 16 15 27 27 C 1.55192 * 108.87653 * 319.46984 * 26 25 16 28 28 O 1.39635 * 110.56737 * 322.14196 * 27 26 25 29 29 H 1.09002 * 109.46595 * 299.99602 * 1 2 3 30 30 H 1.09000 * 109.47195 * 59.99744 * 1 2 3 31 31 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46595 * 240.00398 * 2 1 3 33 33 H 1.08998 * 109.47270 * 169.13120 * 3 2 1 34 34 H 1.09004 * 109.46958 * 289.12927 * 3 2 1 35 35 H 1.09002 * 109.47071 * 49.13196 * 3 2 1 36 36 H 1.09005 * 109.47292 * 265.37611 * 7 6 4 37 37 H 1.08997 * 109.47398 * 25.38042 * 7 6 4 38 38 H 1.09008 * 109.46937 * 145.38223 * 7 6 4 39 39 H 1.08999 * 109.47113 * 150.00066 * 8 6 4 40 40 H 1.08996 * 109.47085 * 29.99828 * 8 6 4 41 41 H 0.97003 * 119.99994 * 0.02562 * 11 9 8 42 42 H 1.08999 * 109.47083 * 60.00128 * 12 11 9 43 43 H 1.08996 * 109.46973 * 299.99977 * 12 11 9 44 44 H 1.09002 * 109.98677 * 297.15086 * 15 13 12 45 45 H 1.08998 * 109.99485 * 58.52334 * 15 13 12 46 46 H 0.97000 * 120.00174 * 179.97438 * 20 19 17 47 47 H 1.09000 * 108.12331 * 327.59929 * 25 16 15 48 48 H 1.09001 * 107.96481 * 210.98807 * 25 16 15 49 49 H 1.09003 * 109.57147 * 199.64543 * 26 25 16 50 50 H 1.09002 * 109.56553 * 79.28659 * 26 25 16 51 51 H 1.08997 * 109.25478 * 201.86191 * 27 26 25 52 52 H 1.08997 * 109.25570 * 82.42468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2575 -1.0211 2.1101 6 7 3.3428 -1.0006 1.3532 7 6 4.2611 -0.7244 0.2456 8 6 3.8489 -1.5923 2.5941 9 6 4.2613 -0.4955 3.5418 10 8 4.1445 0.6659 3.2129 11 7 4.7600 -0.8054 4.7549 12 6 5.1615 0.2608 5.6761 13 6 5.6899 -0.3571 6.9721 14 1 6.5488 -0.9841 6.7328 15 6 6.1331 0.7272 7.8590 16 7 6.5922 0.0831 9.1348 17 6 7.9171 0.0871 9.4811 18 1 8.2034 0.0440 10.5216 19 6 8.8920 0.1465 8.4948 20 7 8.5859 -0.1450 7.2484 21 14 10.6386 0.6404 8.9367 22 1 10.7218 0.9151 10.3936 23 1 11.5685 -0.4637 8.5877 24 1 11.0141 1.8616 8.1798 25 6 5.6167 -0.5369 9.9840 26 6 5.3185 -2.0358 9.7068 27 6 5.2728 -2.2633 8.1723 28 8 4.6705 -1.1776 7.5333 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1126 1.4487 0.1938 34 1 1.8436 1.8973 -0.9710 35 1 1.5271 2.0092 0.7772 36 1 4.3796 -1.6224 -0.3608 37 1 3.8565 0.0789 -0.3701 38 1 5.2305 -0.4242 0.6436 39 1 4.7097 -2.2228 2.3714 40 1 3.0664 -2.1952 3.0547 41 1 4.8538 -1.7343 5.0179 42 1 4.3011 0.8919 5.8984 43 1 5.9445 0.8631 5.2155 44 1 6.9576 1.2715 7.3986 45 1 5.3042 1.4055 8.0613 46 1 9.2671 -0.1031 6.5591 47 1 4.6832 0.0177 9.8893 48 1 5.9604 -0.4444 11.0143 49 1 4.3568 -2.3038 10.1445 50 1 6.1048 -2.6514 10.1439 51 1 4.7022 -3.1673 7.9598 52 1 6.2888 -2.3834 7.7963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149803797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -83.203536 kcal Electronic energy + Delta-G solvation = -31557.953797 eV Core-core repulsion = 27365.957651 eV Total energy + Delta-G solvation = -4191.996146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49632 -39.35380 -38.54712 -35.61668 -35.00593 -34.70196 -34.39790 -32.19162 -31.25251 -29.42632 -28.33281 -27.27218 -26.72875 -25.38325 -25.18716 -23.12701 -22.33044 -20.79372 -20.22447 -19.60024 -19.01670 -17.45686 -17.31397 -16.98408 -16.42436 -15.99741 -15.40851 -15.28500 -14.92482 -14.83072 -14.60710 -14.37961 -14.10005 -13.92196 -13.65033 -13.21564 -13.08156 -12.93782 -12.81688 -12.71784 -12.49987 -12.44561 -12.32536 -12.01214 -11.93937 -11.77941 -11.41518 -11.29116 -11.25956 -11.21455 -10.87236 -10.76339 -10.47198 -10.15954 -10.03326 -9.93588 -9.79363 -9.67181 -9.49241 -8.82789 -8.74656 -8.66190 -8.51366 -6.79895 -5.94727 -3.36274 2.44859 2.78099 2.87348 3.29964 3.39124 3.41177 3.61604 4.28571 4.40849 4.63195 4.70355 4.77588 4.85923 4.97034 5.00126 5.12557 5.23033 5.24468 5.27149 5.35626 5.38155 5.44513 5.59968 5.63559 5.69457 5.72710 5.83091 5.92842 6.02196 6.02781 6.04307 6.13561 6.20542 6.33701 6.41258 6.48356 6.57206 6.68124 6.71437 6.82231 6.92761 6.96311 7.12175 7.17599 7.28584 7.70818 7.80929 8.05807 8.14645 8.31961 8.49358 9.05236 9.72512 10.28587 11.14166 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002568 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.228074 B =10902.100044 C =11794.696350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.524 3.476 5 O -0.536 6.536 6 N -0.600 5.600 7 C 0.072 3.928 8 C 0.094 3.906 9 C 0.493 3.507 10 O -0.542 6.542 11 N -0.712 5.712 12 C 0.123 3.877 13 C 0.059 3.941 14 H 0.111 0.889 15 C 0.145 3.855 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.908 5.908 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.161 3.839 26 C -0.172 4.172 27 C 0.067 3.933 28 O -0.369 6.369 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.400 0.600 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.051 0.949 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -3.811 -15.316 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.312 3.688 5 O -0.412 6.412 6 N -0.332 5.332 7 C -0.071 4.071 8 C -0.033 4.033 9 C 0.277 3.723 10 O -0.419 6.419 11 N -0.363 5.363 12 C -0.001 4.001 13 C 0.000 4.000 14 H 0.128 0.872 15 C 0.020 3.980 16 N -0.308 5.308 17 C -0.377 4.377 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.032 3.968 26 C -0.213 4.213 27 C -0.011 4.011 28 O -0.288 6.288 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.069 0.931 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.684 -3.052 -15.198 18.278 hybrid contribution 1.471 -0.424 0.390 1.580 sum -8.213 -3.476 -14.808 17.286 Atomic orbital electron populations 1.21633 0.92510 1.02594 1.02305 1.21281 0.98251 0.97548 0.96224 1.21899 1.02292 0.93694 1.02678 1.20734 0.81349 0.78051 0.88666 1.90692 1.55162 1.52649 1.42737 1.47350 1.07911 1.63236 1.14734 1.22025 0.94419 1.01385 0.89251 1.21308 1.01753 0.94750 0.85467 1.21033 0.77653 0.90853 0.82775 1.90666 1.54427 1.20534 1.76278 1.45888 1.64077 1.10919 1.15375 1.21687 0.99586 0.89742 0.89133 1.22232 0.90368 0.96608 0.90765 0.87183 1.20685 0.97344 0.93056 0.86887 1.44091 1.03550 1.60844 1.22322 1.19295 0.81476 1.44829 0.92119 0.91389 1.24969 0.97953 1.00584 0.95946 1.69840 1.33244 1.51563 1.00673 0.86189 0.84467 0.77953 0.77932 1.20347 1.21816 1.21538 1.20384 0.92227 0.90360 0.93850 1.23572 0.99455 1.01575 0.96680 1.22343 0.97654 0.88141 0.92932 1.87525 1.31714 1.37301 1.72212 0.91653 0.92039 0.92240 0.88892 0.91122 0.91553 0.91723 0.92404 0.89821 0.90880 0.87577 0.86914 0.76586 0.92175 0.90556 0.88280 0.96262 0.93570 0.95045 0.94906 0.93197 0.92500 0.93127 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.51 37.16 0.32 -0.91 16 2 C -0.11 -1.05 2.41 -91.77 -0.22 -1.27 16 3 C -0.15 -1.34 8.70 37.16 0.32 -1.01 16 4 C 0.52 6.92 6.93 -10.99 -0.08 6.84 16 5 O -0.54 -9.16 15.53 5.56 0.09 -9.08 16 6 N -0.60 -6.99 2.36 -182.95 -0.43 -7.42 16 7 C 0.07 0.58 9.75 59.85 0.58 1.16 16 8 C 0.09 1.12 5.95 -5.19 -0.03 1.09 16 9 C 0.49 7.86 7.90 -10.99 -0.09 7.77 16 10 O -0.54 -10.50 16.43 5.56 0.09 -10.41 16 11 N -0.71 -11.37 5.41 -60.30 -0.33 -11.70 16 12 C 0.12 2.29 5.24 -4.04 -0.02 2.27 16 13 C 0.06 1.20 1.98 -29.65 -0.06 1.14 16 14 H 0.11 2.48 5.07 -51.93 -0.26 2.22 16 15 C 0.15 3.29 4.70 -4.93 -0.02 3.27 16 16 N -0.59 -14.08 2.60 -174.50 -0.45 -14.53 16 17 C -0.25 -6.41 9.59 -15.06 -0.14 -6.56 16 18 H 0.07 1.77 7.87 -52.48 -0.41 1.36 16 19 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 20 N -0.91 -23.34 9.54 55.49 0.53 -22.81 16 21 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.16 3.42 5.33 -4.43 -0.02 3.39 16 26 C -0.17 -3.23 6.75 -24.34 -0.16 -3.39 16 27 C 0.07 1.26 6.38 38.32 0.24 1.50 16 28 O -0.37 -7.30 9.44 -31.92 -0.30 -7.60 16 29 H 0.06 0.72 8.00 -51.93 -0.42 0.30 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.63 7.54 -51.93 -0.39 0.24 16 33 H 0.07 0.68 5.85 -51.93 -0.30 0.38 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.58 4.38 -51.93 -0.23 0.35 16 38 H 0.07 0.62 8.11 -51.92 -0.42 0.20 16 39 H 0.11 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.11 1.38 7.36 -51.93 -0.38 0.99 16 41 H 0.40 5.66 8.26 -40.82 -0.34 5.32 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.10 2.45 6.20 -51.93 -0.32 2.13 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 47 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 48 H 0.03 0.69 7.96 -51.93 -0.41 0.27 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.06 1.33 6.66 -51.93 -0.35 0.98 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -31.82 404.43 -8.06 -39.88 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.85 Total: 6.63 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 0.53 Total: 15.29 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.68 Total: -56.46 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.12 Total: -27.08 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.82 -8.06 -39.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149803797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.324 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds