Wall clock time and date at job start Wed Apr 1 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 H 1.08994 * 109.48568 * 54.97445 * 3 2 1 5 5 O 1.42906 * 109.53688 * 294.97116 * 3 2 1 6 6 C 1.42906 * 114.15408 * 178.92162 * 5 3 2 7 7 C 1.53093 * 109.41168 * 61.13024 * 6 5 3 8 8 C 1.53184 * 109.16473 * 302.39062 * 7 6 5 9 9 C 1.53096 * 109.47863 * 174.99957 * 3 2 1 10 10 H 1.09002 * 109.52054 * 57.62757 * 9 3 2 11 11 C 1.50701 * 109.52445 * 297.49904 * 9 3 2 12 12 O 1.21280 * 119.99781 * 0.12350 * 11 9 3 13 13 N 1.34771 * 119.99622 * 180.13026 * 11 9 3 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.47859 * 179.97438 * 16 15 14 18 18 C 1.46890 * 111.00688 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47411 * 180.02562 * 18 17 16 20 20 O 1.21289 * 119.99984 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99976 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99915 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00141 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99846 * 179.97438 * 22 21 19 25 25 N 1.31417 * 119.99683 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00178 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46826 * 90.00335 * 26 24 22 28 28 H 1.48500 * 109.46972 * 209.99573 * 26 24 22 29 29 H 1.48497 * 109.47335 * 330.00278 * 26 24 22 30 30 H 1.09004 * 109.46926 * 299.99771 * 1 2 3 31 31 H 1.08997 * 109.47217 * 59.99775 * 1 2 3 32 32 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47378 * 239.99950 * 2 1 3 34 34 H 1.09006 * 109.47494 * 120.00182 * 2 1 3 35 35 H 1.08996 * 109.47792 * 301.14785 * 6 5 3 36 36 H 1.08997 * 109.49063 * 181.11821 * 6 5 3 37 37 H 1.08994 * 109.52212 * 182.48344 * 7 6 5 38 38 H 1.08999 * 109.52185 * 62.29274 * 7 6 5 39 39 H 1.08997 * 109.54185 * 297.11458 * 8 7 6 40 40 H 1.08994 * 109.54409 * 176.84473 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 43 43 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 44 44 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 46 46 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 47 47 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 48 48 H 1.00909 * 110.99304 * 303.95833 * 17 16 15 49 49 H 1.09005 * 109.47135 * 300.00288 * 18 17 16 50 50 H 1.09002 * 109.47335 * 59.99960 * 18 17 16 51 51 H 0.97006 * 120.00554 * 359.97438 * 21 19 18 52 52 H 0.97003 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8414 5 8 1.6633 2.0826 -1.2209 6 6 2.0713 3.4489 -1.3149 7 6 3.5983 3.5301 -1.2427 8 6 4.0748 2.8879 0.0639 9 6 3.5658 1.4445 0.1258 10 1 3.9995 0.8699 -0.6927 11 6 3.9635 0.8262 1.4413 12 8 3.1112 0.4211 2.2032 13 7 5.2662 0.7235 1.7711 14 6 5.6527 0.1230 3.0503 15 6 7.1776 0.1278 3.1758 16 6 7.5813 -0.4988 4.5119 17 7 9.0454 -0.4948 4.6323 18 6 9.4707 -1.0909 5.9056 19 6 10.9750 -1.0686 5.9932 20 8 11.6285 -0.6024 5.0840 21 7 11.5941 -1.5676 7.0813 22 6 12.9627 -1.5478 7.1607 23 1 13.5446 -1.1327 6.3512 24 6 13.6009 -2.0618 8.2828 25 7 14.9128 -2.0433 8.3587 26 14 12.5944 -2.7792 9.6834 27 1 12.3807 -4.2296 9.4471 28 1 13.3217 -2.5883 10.9640 29 1 11.2808 -2.0901 9.7525 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6377 4.0152 -0.4906 36 1 1.7295 3.8662 -2.2620 37 1 3.9093 4.5744 -1.2698 38 1 4.0318 2.9978 -2.0894 39 1 3.6816 3.4499 0.9110 40 1 5.1643 2.8920 0.0961 41 1 5.9478 1.0472 1.1617 42 1 5.2187 0.6986 3.8678 43 1 5.2881 -0.9033 3.0948 44 1 7.6113 -0.4481 2.3583 45 1 7.5426 1.1538 3.1311 46 1 7.1476 0.0774 5.3292 47 1 7.2163 -1.5249 4.5570 48 1 9.4737 -0.9681 3.8508 49 1 9.0504 -0.5189 6.7329 50 1 9.1184 -2.1210 5.9602 51 1 11.0715 -1.9408 7.8084 52 1 15.3584 -2.4025 9.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159621880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:36 Heat of formation + Delta-G solvation = -136.431432 kcal Electronic energy + Delta-G solvation = -29002.015965 eV Core-core repulsion = 24807.711684 eV Total energy + Delta-G solvation = -4194.304280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98501 -39.05808 -38.52602 -36.71060 -35.15952 -34.35243 -34.06447 -33.89917 -31.77081 -31.50063 -30.35774 -27.41517 -25.82416 -25.39415 -24.25801 -23.03626 -21.86970 -21.65873 -21.44484 -20.32351 -19.39164 -18.36693 -17.77731 -17.01824 -16.51455 -16.28331 -16.04083 -15.75212 -15.63095 -15.06634 -14.97857 -14.84591 -14.66673 -14.21891 -14.11929 -13.80572 -13.73269 -13.54657 -13.32320 -13.15001 -12.89116 -12.64283 -12.39929 -12.19574 -12.12151 -11.95941 -11.78316 -11.73972 -11.67882 -11.57052 -11.35293 -11.22638 -11.13379 -11.02889 -10.69151 -10.61093 -10.12855 -9.99438 -9.82014 -9.59314 -9.42156 -8.63067 -8.23204 -8.17735 -6.32997 -3.84587 2.22534 2.69904 3.01533 3.05367 3.13908 3.37858 3.71676 4.01388 4.04587 4.09077 4.16328 4.19377 4.39104 4.56471 4.67816 4.70812 4.75620 4.76931 4.92746 4.94365 4.96898 5.01785 5.10993 5.16010 5.19899 5.27215 5.31187 5.31390 5.39159 5.39849 5.44780 5.51479 5.59568 5.61555 5.66534 5.76920 5.78165 5.86097 5.89894 5.90091 5.94936 6.03796 6.15024 6.78948 7.02956 7.08244 7.51325 7.56330 7.82436 8.12369 8.57696 8.92871 9.40391 9.80342 10.80071 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028454 B = 0.001402 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.799807 B =19972.069709 C =20704.592628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.114 3.886 4 H 0.066 0.934 5 O -0.375 6.375 6 C 0.057 3.943 7 C -0.155 4.155 8 C -0.115 4.115 9 C -0.141 4.141 10 H 0.106 0.894 11 C 0.521 3.479 12 O -0.535 6.535 13 N -0.726 5.726 14 C 0.120 3.880 15 C -0.130 4.130 16 C 0.063 3.937 17 N -0.669 5.669 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.566 6.566 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.351 0.649 49 H 0.088 0.912 50 H 0.045 0.955 51 H 0.371 0.629 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.658 7.589 -17.406 34.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.056 3.944 4 H 0.084 0.916 5 O -0.294 6.294 6 C -0.020 4.020 7 C -0.192 4.192 8 C -0.152 4.152 9 C -0.162 4.162 10 H 0.124 0.876 11 C 0.307 3.693 12 O -0.412 6.412 13 N -0.378 5.378 14 C -0.004 4.004 15 C -0.168 4.168 16 C -0.067 4.067 17 N -0.302 5.302 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.236 0.764 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.170 0.830 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.686 8.102 -17.238 34.433 hybrid contribution -0.110 -1.199 1.039 1.591 sum -28.795 6.903 -16.199 33.752 Atomic orbital electron populations 1.21660 0.95255 1.01445 1.01905 1.21768 0.96947 0.93846 1.03588 1.21864 0.90383 0.95149 0.87049 0.91585 1.87965 1.78159 1.24514 1.38721 1.22600 0.93657 0.83417 1.02284 1.22201 0.97137 1.01928 0.97979 1.21603 1.01438 0.93478 0.98720 1.22039 0.99527 0.98153 0.96508 0.87609 1.20377 0.82421 0.78546 0.87978 1.90684 1.49672 1.48630 1.52187 1.46031 1.07483 1.62836 1.21470 1.21343 0.95055 0.98738 0.85264 1.21743 0.93476 1.03223 0.98344 1.21827 0.88985 0.98814 0.97119 1.60043 1.05626 1.60278 1.04252 1.21705 0.95419 0.97860 0.93502 1.19702 0.88472 0.84028 0.84297 1.90560 1.66483 1.48880 1.38823 1.42209 1.07742 1.55472 1.17525 1.19437 0.79654 1.38400 1.06001 0.86281 1.25041 0.95625 0.97707 0.97747 1.69626 1.07216 1.45283 1.29955 0.86666 0.80064 0.79963 0.82667 1.19653 1.20137 1.19461 0.92913 0.92343 0.92854 0.91845 0.88408 0.93116 0.88654 0.90265 0.90634 0.91079 0.90624 0.76371 0.91173 0.91368 0.91178 0.90074 0.90752 0.95195 0.83004 0.89424 0.93680 0.79663 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.15 0.36 -0.78 16 2 C -0.12 -1.06 5.41 -26.73 -0.14 -1.21 16 3 C 0.11 0.93 1.79 -26.68 -0.05 0.88 16 4 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 5 O -0.37 -3.05 9.95 -35.23 -0.35 -3.40 16 6 C 0.06 0.32 6.85 37.21 0.25 0.57 16 7 C -0.15 -0.69 6.14 -26.59 -0.16 -0.86 16 8 C -0.11 -0.59 5.19 -26.54 -0.14 -0.73 16 9 C -0.14 -0.95 2.23 -91.63 -0.20 -1.16 16 10 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 11 C 0.52 4.56 6.84 -10.99 -0.08 4.49 16 12 O -0.53 -6.49 13.84 5.56 0.08 -6.41 16 13 N -0.73 -5.19 5.46 -60.29 -0.33 -5.52 16 14 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 15 C -0.13 -1.08 5.59 -26.74 -0.15 -1.23 16 16 C 0.06 0.66 5.68 -3.83 -0.02 0.64 16 17 N -0.67 -9.81 6.13 -115.06 -0.70 -10.52 16 18 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 19 C 0.45 10.10 7.82 -10.99 -0.09 10.01 16 20 O -0.57 -15.06 15.78 5.55 0.09 -14.97 16 21 N -0.59 -13.97 5.09 -10.97 -0.06 -14.03 16 22 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 26 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.98 5.65 -51.93 -0.29 0.69 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.30 7.68 -51.93 -0.40 -0.10 16 41 H 0.40 1.99 7.97 -40.82 -0.33 1.66 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.35 5.28 8.43 -39.29 -0.33 4.95 16 49 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 414.96 15.07 6.25 6.25 Total: -1.00 -34.35 414.96 -8.82 -43.18 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -9.15 Total: 11.17 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.71 Total: 4.57 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.32 Total: -54.93 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.19 Total: -24.78 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.35 -8.82 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159621880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.254 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds