Wall clock time and date at job start Wed Apr 1 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 H 1.08994 * 109.48568 * 54.97445 * 3 2 1 5 5 O 1.42906 * 109.53688 * 294.97116 * 3 2 1 6 6 C 1.42906 * 114.15408 * 178.92162 * 5 3 2 7 7 C 1.53093 * 109.41168 * 61.13024 * 6 5 3 8 8 C 1.53184 * 109.16473 * 302.39062 * 7 6 5 9 9 C 1.53096 * 109.47863 * 174.99957 * 3 2 1 10 10 H 1.09002 * 109.52054 * 57.62757 * 9 3 2 11 11 C 1.50701 * 109.52445 * 297.49904 * 9 3 2 12 12 O 1.21280 * 119.99781 * 0.12350 * 11 9 3 13 13 N 1.34771 * 119.99622 * 180.13026 * 11 9 3 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.47859 * 179.97438 * 16 15 14 18 18 C 1.46890 * 111.00688 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47411 * 180.02562 * 18 17 16 20 20 O 1.21289 * 119.99984 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99976 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99915 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00141 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99846 * 179.97438 * 22 21 19 25 25 N 1.31417 * 119.99683 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00178 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46826 * 90.00335 * 26 24 22 28 28 H 1.48500 * 109.46972 * 209.99573 * 26 24 22 29 29 H 1.48497 * 109.47335 * 330.00278 * 26 24 22 30 30 H 1.09004 * 109.46926 * 299.99771 * 1 2 3 31 31 H 1.08997 * 109.47217 * 59.99775 * 1 2 3 32 32 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47378 * 239.99950 * 2 1 3 34 34 H 1.09006 * 109.47494 * 120.00182 * 2 1 3 35 35 H 1.08996 * 109.47792 * 301.14785 * 6 5 3 36 36 H 1.08997 * 109.49063 * 181.11821 * 6 5 3 37 37 H 1.08994 * 109.52212 * 182.48344 * 7 6 5 38 38 H 1.08999 * 109.52185 * 62.29274 * 7 6 5 39 39 H 1.08997 * 109.54185 * 297.11458 * 8 7 6 40 40 H 1.08994 * 109.54409 * 176.84473 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 43 43 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 44 44 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 46 46 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 47 47 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 48 48 H 1.00909 * 110.99304 * 303.95833 * 17 16 15 49 49 H 1.09005 * 109.47135 * 300.00288 * 18 17 16 50 50 H 1.09002 * 109.47335 * 59.99960 * 18 17 16 51 51 H 0.97006 * 120.00554 * 359.97438 * 21 19 18 52 52 H 0.97003 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8414 5 8 1.6633 2.0826 -1.2209 6 6 2.0713 3.4489 -1.3149 7 6 3.5983 3.5301 -1.2427 8 6 4.0748 2.8879 0.0639 9 6 3.5658 1.4445 0.1258 10 1 3.9995 0.8699 -0.6927 11 6 3.9635 0.8262 1.4413 12 8 3.1112 0.4211 2.2032 13 7 5.2662 0.7235 1.7711 14 6 5.6527 0.1230 3.0503 15 6 7.1776 0.1278 3.1758 16 6 7.5813 -0.4988 4.5119 17 7 9.0454 -0.4948 4.6323 18 6 9.4707 -1.0909 5.9056 19 6 10.9750 -1.0686 5.9932 20 8 11.6285 -0.6024 5.0840 21 7 11.5941 -1.5676 7.0813 22 6 12.9627 -1.5478 7.1607 23 1 13.5446 -1.1327 6.3512 24 6 13.6009 -2.0618 8.2828 25 7 14.9128 -2.0433 8.3587 26 14 12.5944 -2.7792 9.6834 27 1 12.3807 -4.2296 9.4471 28 1 13.3217 -2.5883 10.9640 29 1 11.2808 -2.0901 9.7525 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6377 4.0152 -0.4906 36 1 1.7295 3.8662 -2.2620 37 1 3.9093 4.5744 -1.2698 38 1 4.0318 2.9978 -2.0894 39 1 3.6816 3.4499 0.9110 40 1 5.1643 2.8920 0.0961 41 1 5.9478 1.0472 1.1617 42 1 5.2187 0.6986 3.8678 43 1 5.2881 -0.9033 3.0948 44 1 7.6113 -0.4481 2.3583 45 1 7.5426 1.1538 3.1311 46 1 7.1476 0.0774 5.3292 47 1 7.2163 -1.5249 4.5570 48 1 9.4737 -0.9681 3.8508 49 1 9.0504 -0.5189 6.7329 50 1 9.1184 -2.1210 5.9602 51 1 11.0715 -1.9408 7.8084 52 1 15.3584 -2.4025 9.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159621880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:35 Heat of formation + Delta-G solvation = -163.841038 kcal Electronic energy + Delta-G solvation = -29003.204535 eV Core-core repulsion = 24807.711684 eV Total energy + Delta-G solvation = -4195.492850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60349 -40.31099 -39.65477 -37.66727 -36.19356 -35.75695 -34.86936 -34.67794 -33.75530 -32.41729 -30.95870 -28.72408 -26.61243 -26.32007 -25.35401 -24.08435 -22.60777 -22.29923 -21.98099 -21.29039 -20.91515 -20.24208 -18.42585 -17.85488 -17.52833 -17.29203 -16.91641 -16.79726 -16.52039 -16.37354 -15.76938 -15.74787 -15.47902 -15.45474 -14.96999 -14.88164 -14.68515 -14.51089 -14.26117 -14.21207 -14.08255 -13.84267 -13.39219 -13.21888 -13.14051 -12.88957 -12.69408 -12.67555 -12.42315 -12.41687 -12.30180 -12.15473 -11.98074 -11.86988 -11.85051 -11.72034 -11.51466 -11.23484 -10.77041 -10.45372 -10.38505 -10.25256 -10.09280 -9.33497 -8.41641 -6.02703 1.30805 1.35556 1.44861 1.55885 1.95266 2.06752 2.22987 2.73184 2.86638 3.15016 3.41459 3.49201 3.67544 3.69276 3.97664 4.00343 4.08816 4.12119 4.14562 4.18176 4.23434 4.26557 4.35991 4.44198 4.49803 4.53782 4.56163 4.58161 4.71190 4.72072 4.79289 4.81168 4.87698 4.91552 5.00015 5.06872 5.11741 5.17169 5.21373 5.23801 5.30920 5.38630 5.49781 5.52390 5.90103 6.04192 6.25900 6.39021 6.50023 6.59417 6.87596 7.19694 7.39422 7.95765 8.75933 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028454 B = 0.001402 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.799807 B =19972.069709 C =20704.592628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.115 3.885 4 H 0.049 0.951 5 O -0.389 6.389 6 C 0.049 3.951 7 C -0.149 4.149 8 C -0.113 4.113 9 C -0.134 4.134 10 H 0.118 0.882 11 C 0.519 3.481 12 O -0.572 6.572 13 N -0.716 5.716 14 C 0.127 3.873 15 C -0.117 4.117 16 C 0.064 3.936 17 N -0.688 5.688 18 C 0.061 3.939 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.331 4.331 23 H 0.055 0.945 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.257 1.257 28 H -0.276 1.276 29 H -0.231 1.231 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.345 0.655 49 H 0.113 0.887 50 H 0.078 0.922 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.041 7.314 -16.894 36.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.057 3.943 4 H 0.067 0.933 5 O -0.308 6.308 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.151 4.151 9 C -0.155 4.155 10 H 0.136 0.864 11 C 0.306 3.694 12 O -0.452 6.452 13 N -0.369 5.369 14 C 0.003 3.997 15 C -0.155 4.155 16 C -0.066 4.066 17 N -0.320 5.320 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.499 6.499 21 N -0.233 5.233 22 C -0.460 4.460 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.785 3.215 27 H -0.181 1.181 28 H -0.201 1.201 29 H -0.154 1.154 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.164 0.836 49 H 0.131 0.869 50 H 0.096 0.904 51 H 0.226 0.774 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -31.082 7.846 -16.752 36.170 hybrid contribution 0.668 -1.038 0.745 1.442 sum -30.414 6.809 -16.006 35.037 Atomic orbital electron populations 1.21635 0.94983 1.01804 1.01570 1.21723 0.97258 0.94233 1.02928 1.21743 0.91288 0.94603 0.86642 0.93262 1.87939 1.78624 1.25845 1.38397 1.22820 0.94687 0.82200 1.03064 1.22178 0.96109 1.02887 0.97527 1.21637 1.02394 0.92139 0.98930 1.21992 0.98605 0.99313 0.95610 0.86433 1.20714 0.82397 0.77987 0.88267 1.90672 1.50744 1.50313 1.53464 1.45941 1.07400 1.62155 1.21361 1.21202 0.94685 0.98407 0.85444 1.21598 0.93385 1.02946 0.97605 1.21905 0.86278 0.99987 0.98391 1.60048 1.08141 1.60424 1.03428 1.21630 0.89786 1.00483 0.95203 1.21013 0.91333 0.81416 0.82696 1.90538 1.68559 1.50365 1.40453 1.42041 1.06027 1.56335 1.18854 1.19023 0.81803 1.39909 1.05258 0.92645 1.26114 0.96938 0.97354 1.00871 1.69808 1.09838 1.46414 1.31390 0.85364 0.79436 0.79620 0.77097 1.18136 1.20067 1.15444 0.93469 0.92368 0.92166 0.91433 0.89958 0.93153 0.87250 0.88662 0.90245 0.91860 0.88952 0.74900 0.91862 0.91832 0.90562 0.90379 0.90080 0.93793 0.83591 0.86918 0.90434 0.77445 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.81 71.98 0.71 -1.55 16 2 C -0.12 -2.12 5.41 30.59 0.17 -1.95 16 3 C 0.12 1.85 1.79 30.63 0.05 1.91 16 4 H 0.05 0.94 8.04 -2.39 -0.02 0.92 16 5 O -0.39 -6.03 9.95 -148.98 -1.48 -7.51 16 6 C 0.05 0.47 6.85 72.01 0.49 0.97 16 7 C -0.15 -1.02 6.14 30.69 0.19 -0.83 16 8 C -0.11 -0.97 5.19 30.72 0.16 -0.81 16 9 C -0.13 -1.66 2.23 -11.45 -0.03 -1.68 16 10 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 11 C 0.52 8.64 6.84 87.66 0.60 9.24 16 12 O -0.57 -13.88 13.84 -3.03 -0.04 -13.92 16 13 N -0.72 -9.04 5.46 -463.06 -2.53 -11.57 16 14 C 0.13 1.82 5.67 86.38 0.49 2.31 16 15 C -0.12 -1.68 5.59 30.59 0.17 -1.51 16 16 C 0.06 1.14 5.68 86.30 0.49 1.64 16 17 N -0.69 -18.65 6.13 -517.95 -3.17 -21.82 16 18 C 0.06 1.79 6.17 85.56 0.53 2.32 16 19 C 0.45 19.86 7.82 87.66 0.69 20.55 16 20 O -0.61 -33.64 15.78 -3.06 -0.05 -33.69 16 21 N -0.59 -27.57 5.09 -306.99 -1.56 -29.13 16 22 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 23 H 0.06 3.86 7.39 -2.91 -0.02 3.83 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 25 N -0.93 -56.09 13.96 21.66 0.30 -55.79 16 26 Si 0.96 38.42 27.74 68.60 1.90 40.32 16 27 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 28 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 29 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.91 7.83 -2.39 -0.02 0.89 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.69 5.65 -2.38 -0.01 1.67 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.49 7.68 -2.39 -0.02 0.47 16 41 H 0.41 3.16 7.97 -92.71 -0.74 2.42 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.35 9.93 8.43 -89.69 -0.76 9.17 16 49 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.39 14.97 5.76 -92.70 -0.53 14.44 16 52 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -80.13 414.96 -1.76 -81.89 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -1.16 Total: 39.37 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.03 Total: 11.83 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.96 Total: -118.31 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -1.57 Total: -55.12 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.90 Total: 40.32 kcal Total: -80.13 -1.76 -81.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159621880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.948 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds