Wall clock time and date at job start Wed Apr 1 2020 00:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 H 1.09007 * 109.47297 * 54.99980 * 3 2 1 5 5 C 1.53007 * 109.47120 * 174.99938 * 3 2 1 6 6 O 1.42899 * 109.47276 * 295.00055 * 3 2 1 7 7 C 1.42898 * 114.00281 * 149.99779 * 6 3 2 8 8 C 1.50702 * 109.47097 * 179.97438 * 7 6 3 9 9 O 1.21280 * 119.99715 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99829 * 180.02562 * 8 7 6 11 11 C 1.47422 * 125.65008 * 359.97420 * 10 8 7 12 12 C 1.54911 * 104.83544 * 204.16514 * 11 10 8 13 13 C 1.55158 * 101.58008 * 322.99418 * 12 11 10 14 14 H 1.08998 * 110.71870 * 276.95977 * 13 12 11 15 15 N 1.46905 * 110.71973 * 153.86309 * 13 12 11 16 16 C 1.46901 * 110.99870 * 86.45364 * 15 13 12 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00414 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47309 * 89.99614 * 24 22 20 26 26 H 1.48496 * 109.47518 * 209.99740 * 24 22 20 27 27 H 1.48507 * 109.47020 * 329.99990 * 24 22 20 28 28 C 1.47026 * 125.64777 * 180.02562 * 10 8 7 29 29 H 1.08998 * 109.87996 * 298.32268 * 28 10 8 30 30 C 1.53001 * 109.88121 * 59.48878 * 28 10 8 31 31 H 1.08999 * 109.46984 * 300.00075 * 1 2 3 32 32 H 1.08996 * 109.47086 * 59.99868 * 1 2 3 33 33 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46984 * 239.99925 * 2 1 3 35 35 H 1.09005 * 109.47164 * 119.99865 * 2 1 3 36 36 H 1.09004 * 109.46478 * 179.97438 * 5 3 2 37 37 H 1.08995 * 109.46857 * 299.99755 * 5 3 2 38 38 H 1.09000 * 109.46968 * 60.00273 * 5 3 2 39 39 H 1.09004 * 109.46926 * 60.00495 * 7 6 3 40 40 H 1.08991 * 109.47168 * 300.00262 * 7 6 3 41 41 H 1.09001 * 110.36490 * 85.32627 * 11 10 8 42 42 H 1.09002 * 110.36556 * 323.00514 * 11 10 8 43 43 H 1.08998 * 111.00578 * 204.91635 * 12 11 10 44 44 H 1.09004 * 110.99961 * 81.06605 * 12 11 10 45 45 H 1.00901 * 110.99869 * 322.50075 * 15 13 12 46 46 H 1.09004 * 109.47031 * 299.99620 * 16 15 13 47 47 H 1.08995 * 109.47111 * 59.99900 * 16 15 13 48 48 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 49 49 H 0.97001 * 120.00755 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.46856 * 177.81235 * 30 28 10 51 51 H 1.09005 * 109.46832 * 297.80472 * 30 28 10 52 52 H 1.08997 * 109.47503 * 57.80414 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4442 0.1257 6 8 1.6620 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0640 4.0573 -2.4404 9 8 0.9698 3.3267 -3.4039 10 7 0.8180 5.3762 -2.5682 11 6 0.8943 6.3733 -1.4850 12 6 -0.0335 7.5268 -1.9417 13 6 0.2289 7.5508 -3.4707 14 1 1.1272 8.1244 -3.6989 15 7 -0.9307 8.0970 -4.1885 16 6 -0.8617 9.5625 -4.2621 17 6 -2.0653 10.0854 -5.0030 18 8 -2.8983 9.3132 -5.4283 19 7 -2.2155 11.4111 -5.1939 20 6 -3.3102 11.8867 -5.8684 21 1 -4.0520 11.1992 -6.2471 22 6 -3.4654 13.2535 -6.0648 23 7 -4.5144 13.7095 -6.7117 24 14 -2.1821 14.4428 -5.4105 25 1 -1.1395 14.6642 -6.4444 26 1 -2.8305 15.7363 -5.0765 27 1 -1.5560 13.8733 -4.1902 28 6 0.4282 6.0587 -3.8107 29 1 1.2160 5.9503 -4.5560 30 6 -0.8792 5.4668 -4.3413 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.9282 2.4719 0.1253 37 1 3.8532 0.9569 1.0571 38 1 3.9995 0.9052 -0.7161 39 1 2.3770 3.9644 -0.7610 40 1 0.6620 3.6808 -0.3784 41 1 1.9173 6.7319 -1.3709 42 1 0.5349 5.9452 -0.5493 43 1 0.2594 8.4698 -1.4801 44 1 -1.0772 7.2964 -1.7279 45 1 -1.7943 7.7966 -3.7619 46 1 -0.8479 9.9767 -3.2539 47 1 0.0459 9.8575 -4.7886 48 1 -1.5492 12.0287 -4.8542 49 1 -4.6226 14.6636 -6.8492 50 1 -1.1822 6.0032 -5.2405 51 1 -0.7309 4.4134 -4.5792 52 1 -1.6556 5.5620 -3.5823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178494078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:13 Heat of formation + Delta-G solvation = -110.082123 kcal Electronic energy + Delta-G solvation = -29993.222998 eV Core-core repulsion = 25800.061309 eV Total energy + Delta-G solvation = -4193.161689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61561 -39.11383 -38.44271 -37.64251 -34.86969 -34.17897 -33.88273 -31.73369 -31.44671 -30.91987 -30.28304 -28.03077 -26.72521 -25.26117 -24.10553 -23.63494 -23.14946 -21.45121 -20.67756 -19.46469 -19.12429 -18.46492 -17.59433 -17.28865 -16.61754 -16.00555 -15.91411 -15.75783 -15.38616 -14.83708 -14.66923 -14.45489 -14.26121 -14.08276 -13.76215 -13.70681 -13.42530 -13.28661 -13.05756 -12.90396 -12.86304 -12.60872 -12.53916 -12.37186 -12.26120 -12.03679 -11.99576 -11.77310 -11.66419 -11.51867 -11.39882 -11.18599 -11.00386 -10.94153 -10.85350 -10.62251 -10.03140 -9.99950 -9.83585 -9.59862 -8.87383 -8.63659 -8.23021 -8.18202 -6.33132 -3.84799 2.36607 2.41288 2.99174 3.04547 3.12864 3.45636 3.70494 3.93136 4.07788 4.12913 4.25175 4.36511 4.51340 4.58280 4.64998 4.68333 4.71027 4.82530 4.85962 4.92329 4.97092 5.03267 5.11905 5.15934 5.20090 5.20945 5.23917 5.42684 5.47673 5.52434 5.56404 5.60324 5.61105 5.70957 5.71653 5.74307 5.75376 5.83505 5.90413 5.97842 6.10192 6.35040 6.55656 6.74326 7.00301 7.27644 7.46230 7.55596 7.99025 8.12221 8.57086 8.92799 9.39928 9.79732 10.79936 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.001743 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.599603 B =16059.704843 C =16451.611253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.050 3.950 8 C 0.530 3.470 9 O -0.513 6.513 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.168 4.168 13 C 0.083 3.917 14 H 0.095 0.905 15 N -0.653 5.653 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.147 3.853 29 H 0.079 0.921 30 C -0.155 4.155 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.356 0.644 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.088 0.912 51 H 0.061 0.939 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.567 -18.614 19.707 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.234 4.234 6 O -0.272 6.272 7 C -0.030 4.030 8 C 0.317 3.683 9 O -0.387 6.387 10 N -0.354 5.354 11 C -0.024 4.024 12 C -0.208 4.208 13 C -0.029 4.029 14 H 0.113 0.887 15 N -0.285 5.285 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C 0.044 3.956 29 H 0.097 0.903 30 C -0.213 4.213 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.177 0.823 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.080 0.920 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.069 -19.644 17.988 31.635 hybrid contribution 0.828 1.734 1.818 2.645 sum 17.897 -17.910 19.805 32.145 Atomic orbital electron populations 1.21747 0.95208 1.01818 1.02298 1.21625 0.96806 0.94512 1.02803 1.22246 0.94335 0.94290 0.86627 0.92090 1.22313 0.96011 1.02435 1.02649 1.88063 1.89368 1.17774 1.32020 1.22191 1.01194 0.84201 0.95463 1.19809 0.77718 0.80521 0.90256 1.90740 1.50345 1.57497 1.40110 1.48561 1.69104 1.06217 1.11568 1.22294 1.00035 0.89352 0.90673 1.23601 1.00565 0.98487 0.98148 1.22629 0.95666 0.94457 0.90163 0.88654 1.60056 1.04460 1.08048 1.55972 1.21740 0.99198 0.88437 0.99117 1.19683 0.88442 0.82776 0.85657 1.90579 1.44719 1.55835 1.53397 1.42197 1.23089 1.05760 1.51890 1.19434 1.00293 0.92735 1.30977 0.86265 1.25042 0.96972 0.96849 0.97287 1.69618 1.27491 1.14660 1.40273 0.86667 0.81749 0.81646 0.79255 1.19599 1.20208 1.19572 1.21502 0.98208 0.90588 0.85306 0.90273 1.21972 0.95293 1.01506 1.02514 0.93112 0.91692 0.92615 0.90840 0.90678 0.92500 0.91486 0.91503 0.90617 0.90528 0.90970 0.90739 0.89566 0.90073 0.82262 0.93614 0.89328 0.79713 0.91595 0.89279 0.91980 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.79 5.64 -26.73 -0.15 -0.94 16 3 C 0.08 0.58 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 5 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 6 O -0.35 -3.68 9.06 -55.14 -0.50 -4.18 16 7 C 0.05 0.42 5.23 36.01 0.19 0.61 16 8 C 0.53 6.35 7.71 -10.99 -0.08 6.27 16 9 O -0.51 -8.47 15.41 -14.35 -0.22 -8.69 16 10 N -0.62 -6.28 3.08 -163.01 -0.50 -6.78 16 11 C 0.10 0.67 6.69 -2.53 -0.02 0.65 16 12 C -0.17 -1.31 6.63 -24.58 -0.16 -1.48 16 13 C 0.08 0.85 3.11 -65.88 -0.20 0.65 16 14 H 0.10 0.88 7.89 -51.93 -0.41 0.47 16 15 N -0.65 -9.10 4.49 -106.05 -0.48 -9.58 16 16 C 0.05 0.71 6.02 -4.98 -0.03 0.68 16 17 C 0.45 9.76 7.82 -10.99 -0.09 9.67 16 18 O -0.56 -14.71 15.78 5.55 0.09 -14.63 16 19 N -0.59 -13.62 5.09 -10.96 -0.06 -13.67 16 20 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 24 Si 0.88 18.97 27.74 -169.99 -4.71 14.25 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 28 C 0.15 1.71 3.48 -66.95 -0.23 1.48 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 C -0.15 -2.10 8.19 37.16 0.30 -1.79 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 40 H 0.08 0.49 7.79 -51.93 -0.40 0.08 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.37 7.48 -51.93 -0.39 -0.02 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 45 H 0.36 5.28 7.25 -39.29 -0.28 4.99 16 46 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 47 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 48 H 0.37 7.44 5.76 -40.82 -0.24 7.20 16 49 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 51 H 0.06 0.94 6.77 -51.93 -0.35 0.59 16 52 H 0.05 0.65 7.88 -51.93 -0.41 0.24 16 LS Contribution 416.15 15.07 6.27 6.27 Total: -1.00 -35.11 416.15 -8.52 -43.63 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -9.10 Total: 10.80 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.08 Total: 7.28 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.26 Total: -54.74 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.63 Total: -27.50 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.11 -8.52 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178494078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.448 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds