Wall clock time and date at job start Wed Apr 1 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 H 1.09007 * 109.47297 * 54.99980 * 3 2 1 5 5 C 1.53007 * 109.47120 * 174.99938 * 3 2 1 6 6 O 1.42899 * 109.47276 * 295.00055 * 3 2 1 7 7 C 1.42898 * 114.00281 * 149.99779 * 6 3 2 8 8 C 1.50702 * 109.47097 * 179.97438 * 7 6 3 9 9 O 1.21280 * 119.99715 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99829 * 180.02562 * 8 7 6 11 11 C 1.47422 * 125.65008 * 359.97420 * 10 8 7 12 12 C 1.54911 * 104.83544 * 204.16514 * 11 10 8 13 13 C 1.55158 * 101.58008 * 322.99418 * 12 11 10 14 14 H 1.08998 * 110.71870 * 276.95977 * 13 12 11 15 15 N 1.46905 * 110.71973 * 153.86309 * 13 12 11 16 16 C 1.46901 * 110.99870 * 86.45364 * 15 13 12 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00414 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47309 * 89.99614 * 24 22 20 26 26 H 1.48496 * 109.47518 * 209.99740 * 24 22 20 27 27 H 1.48507 * 109.47020 * 329.99990 * 24 22 20 28 28 C 1.47026 * 125.64777 * 180.02562 * 10 8 7 29 29 H 1.08998 * 109.87996 * 298.32268 * 28 10 8 30 30 C 1.53001 * 109.88121 * 59.48878 * 28 10 8 31 31 H 1.08999 * 109.46984 * 300.00075 * 1 2 3 32 32 H 1.08996 * 109.47086 * 59.99868 * 1 2 3 33 33 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46984 * 239.99925 * 2 1 3 35 35 H 1.09005 * 109.47164 * 119.99865 * 2 1 3 36 36 H 1.09004 * 109.46478 * 179.97438 * 5 3 2 37 37 H 1.08995 * 109.46857 * 299.99755 * 5 3 2 38 38 H 1.09000 * 109.46968 * 60.00273 * 5 3 2 39 39 H 1.09004 * 109.46926 * 60.00495 * 7 6 3 40 40 H 1.08991 * 109.47168 * 300.00262 * 7 6 3 41 41 H 1.09001 * 110.36490 * 85.32627 * 11 10 8 42 42 H 1.09002 * 110.36556 * 323.00514 * 11 10 8 43 43 H 1.08998 * 111.00578 * 204.91635 * 12 11 10 44 44 H 1.09004 * 110.99961 * 81.06605 * 12 11 10 45 45 H 1.00901 * 110.99869 * 322.50075 * 15 13 12 46 46 H 1.09004 * 109.47031 * 299.99620 * 16 15 13 47 47 H 1.08995 * 109.47111 * 59.99900 * 16 15 13 48 48 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 49 49 H 0.97001 * 120.00755 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.46856 * 177.81235 * 30 28 10 51 51 H 1.09005 * 109.46832 * 297.80472 * 30 28 10 52 52 H 1.08997 * 109.47503 * 57.80414 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4442 0.1257 6 8 1.6620 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0640 4.0573 -2.4404 9 8 0.9698 3.3267 -3.4039 10 7 0.8180 5.3762 -2.5682 11 6 0.8943 6.3733 -1.4850 12 6 -0.0335 7.5268 -1.9417 13 6 0.2289 7.5508 -3.4707 14 1 1.1272 8.1244 -3.6989 15 7 -0.9307 8.0970 -4.1885 16 6 -0.8617 9.5625 -4.2621 17 6 -2.0653 10.0854 -5.0030 18 8 -2.8983 9.3132 -5.4283 19 7 -2.2155 11.4111 -5.1939 20 6 -3.3102 11.8867 -5.8684 21 1 -4.0520 11.1992 -6.2471 22 6 -3.4654 13.2535 -6.0648 23 7 -4.5144 13.7095 -6.7117 24 14 -2.1821 14.4428 -5.4105 25 1 -1.1395 14.6642 -6.4444 26 1 -2.8305 15.7363 -5.0765 27 1 -1.5560 13.8733 -4.1902 28 6 0.4282 6.0587 -3.8107 29 1 1.2160 5.9503 -4.5560 30 6 -0.8792 5.4668 -4.3413 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.9282 2.4719 0.1253 37 1 3.8532 0.9569 1.0571 38 1 3.9995 0.9052 -0.7161 39 1 2.3770 3.9644 -0.7610 40 1 0.6620 3.6808 -0.3784 41 1 1.9173 6.7319 -1.3709 42 1 0.5349 5.9452 -0.5493 43 1 0.2594 8.4698 -1.4801 44 1 -1.0772 7.2964 -1.7279 45 1 -1.7943 7.7966 -3.7619 46 1 -0.8479 9.9767 -3.2539 47 1 0.0459 9.8575 -4.7886 48 1 -1.5492 12.0287 -4.8542 49 1 -4.6226 14.6636 -6.8492 50 1 -1.1822 6.0032 -5.2405 51 1 -0.7309 4.4134 -4.5792 52 1 -1.6556 5.5620 -3.5823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178494078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:12 Heat of formation + Delta-G solvation = -136.316760 kcal Electronic energy + Delta-G solvation = -29994.360617 eV Core-core repulsion = 25800.061309 eV Total energy + Delta-G solvation = -4194.299308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45569 -40.29878 -39.60626 -38.59975 -36.20325 -35.57790 -34.74535 -33.73086 -32.42894 -31.77214 -30.78098 -28.93569 -27.98161 -26.45713 -25.20203 -24.55464 -23.84736 -21.96249 -21.47176 -21.28366 -20.31696 -19.98086 -18.39312 -18.04362 -17.60554 -17.27376 -16.98788 -16.63160 -16.50011 -16.37774 -15.70188 -15.26659 -15.18816 -15.01447 -14.83106 -14.62638 -14.44966 -14.36443 -14.17235 -13.99872 -13.83077 -13.65050 -13.63012 -13.37124 -13.10964 -13.01611 -12.94025 -12.70451 -12.56273 -12.48571 -12.38695 -12.26802 -11.96597 -11.93315 -11.82476 -11.68113 -11.48942 -11.46830 -10.78166 -10.58809 -10.40822 -10.22640 -9.70956 -9.25698 -8.39263 -6.00456 1.31549 1.38426 1.46915 1.55392 1.62998 1.99574 2.25405 2.72797 2.90122 3.17444 3.32060 3.46436 3.64083 3.80500 3.91852 4.05529 4.07087 4.12647 4.15990 4.19353 4.23436 4.27653 4.36536 4.42416 4.43571 4.52158 4.61446 4.65968 4.66913 4.71748 4.74302 4.76656 4.83360 5.00324 5.04960 5.09536 5.09659 5.12942 5.20501 5.30023 5.37560 5.39178 5.42306 5.54838 5.93099 6.07861 6.19359 6.35844 6.50803 6.62133 6.90890 7.14234 7.42730 8.00407 8.78525 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.001743 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.599603 B =16059.704843 C =16451.611253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.078 3.922 4 H 0.083 0.917 5 C -0.174 4.174 6 O -0.390 6.390 7 C 0.054 3.946 8 C 0.520 3.480 9 O -0.574 6.574 10 N -0.613 5.613 11 C 0.098 3.902 12 C -0.160 4.160 13 C 0.089 3.911 14 H 0.118 0.882 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.447 3.553 18 O -0.617 6.617 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.225 1.225 28 C 0.145 3.855 29 H 0.065 0.935 30 C -0.143 4.143 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.347 0.653 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.391 0.609 49 H 0.278 0.722 50 H 0.067 0.933 51 H 0.037 0.963 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.457 -16.968 24.155 36.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.021 3.979 4 H 0.101 0.899 5 C -0.231 4.231 6 O -0.310 6.310 7 C -0.025 4.025 8 C 0.309 3.691 9 O -0.453 6.453 10 N -0.349 5.349 11 C -0.024 4.024 12 C -0.200 4.200 13 C -0.022 4.022 14 H 0.136 0.864 15 N -0.308 5.308 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.149 1.149 28 C 0.041 3.959 29 H 0.083 0.917 30 C -0.201 4.201 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.167 0.833 46 H 0.104 0.896 47 H 0.135 0.865 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.056 0.944 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.997 -17.992 22.490 35.642 hybrid contribution -0.493 1.073 0.366 1.236 sum 20.504 -16.919 22.855 35.057 Atomic orbital electron populations 1.21723 0.95784 1.01906 1.01482 1.21676 0.96291 0.94838 1.03069 1.22454 0.95182 0.94175 0.86124 0.89916 1.22297 0.95037 1.02848 1.02917 1.88040 1.89804 1.18931 1.34190 1.22287 1.03333 0.83566 0.93295 1.20632 0.76750 0.80642 0.91097 1.90712 1.53138 1.59095 1.42328 1.48605 1.67872 1.06390 1.12012 1.22620 1.01557 0.87978 0.90216 1.23576 1.00411 1.00295 0.95712 1.22634 0.94872 0.92843 0.91866 0.86407 1.59969 1.05359 1.07716 1.57755 1.21655 0.95966 0.88846 1.00246 1.21102 0.89513 0.81847 0.84066 1.90563 1.47267 1.57144 1.55153 1.42007 1.22322 1.06817 1.52082 1.18999 1.01266 0.92574 1.33025 0.92966 1.26160 0.99803 0.98706 0.96894 1.69813 1.30439 1.15535 1.41952 0.85336 0.78025 0.77671 0.80274 1.18358 1.20248 1.14850 1.21397 0.96288 0.92048 0.86164 0.91670 1.21797 0.96857 0.99779 1.01713 0.91759 0.94529 0.92164 0.92647 0.88281 0.91840 0.89533 0.93201 0.87586 0.87967 0.88159 0.88158 0.86745 0.91121 0.83252 0.89551 0.86457 0.77353 0.91220 0.91388 0.94413 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.81 71.98 0.71 -1.35 16 2 C -0.12 -1.47 5.64 30.59 0.17 -1.29 16 3 C 0.08 0.93 2.72 30.60 0.08 1.01 16 4 H 0.08 0.61 7.79 -2.38 -0.02 0.60 16 5 C -0.17 -1.62 9.53 71.98 0.69 -0.93 16 6 O -0.39 -7.81 9.06 -129.94 -1.18 -8.99 16 7 C 0.05 0.79 5.23 71.24 0.37 1.16 16 8 C 0.52 12.12 7.71 87.66 0.68 12.80 16 9 O -0.57 -19.94 15.41 16.01 0.25 -19.69 16 10 N -0.61 -11.30 3.08 -788.05 -2.43 -13.73 16 11 C 0.10 0.85 6.69 86.86 0.58 1.43 16 12 C -0.16 -1.77 6.63 31.99 0.21 -1.56 16 13 C 0.09 1.55 3.11 46.10 0.14 1.69 16 14 H 0.12 1.60 7.89 -2.39 -0.02 1.58 16 15 N -0.68 -17.71 4.49 -489.44 -2.20 -19.91 16 16 C 0.06 1.71 6.02 85.56 0.52 2.23 16 17 C 0.45 19.22 7.82 87.66 0.69 19.90 16 18 O -0.62 -33.59 15.78 -3.07 -0.05 -33.64 16 19 N -0.59 -26.78 5.09 -306.99 -1.56 -28.34 16 20 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 21 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 24 Si 0.97 37.66 27.74 68.60 1.90 39.57 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 28 C 0.14 3.28 3.48 45.34 0.16 3.44 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 C -0.14 -4.12 8.19 71.98 0.59 -3.53 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.04 0.70 7.82 -2.39 -0.02 0.68 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.11 0.88 7.87 -2.38 -0.02 0.86 16 40 H 0.10 0.93 7.79 -2.39 -0.02 0.91 16 41 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.10 0.43 7.48 -2.39 -0.02 0.41 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.98 7.81 -2.39 -0.02 0.96 16 45 H 0.35 10.12 7.25 -89.69 -0.65 9.47 16 46 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16 47 H 0.12 2.53 8.08 -2.39 -0.02 2.51 16 48 H 0.39 14.31 5.76 -92.71 -0.53 13.77 16 49 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.07 2.21 7.40 -2.39 -0.02 2.19 16 51 H 0.04 1.24 6.77 -2.38 -0.02 1.23 16 52 H 0.05 1.36 7.88 -2.39 -0.02 1.35 16 Total: -1.00 -88.07 416.15 1.61 -86.46 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.33 Total: 37.96 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.90 Total: 16.30 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -5.89 Total: -117.97 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -0.98 Total: -62.32 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.57 kcal Total: -88.07 1.61 -86.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178494078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.853 kcal (2) G-P(sol) polarization free energy of solvation -88.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds