Wall clock time and date at job start Wed Apr 1 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.50709 * 109.46435 * 180.02562 * 3 2 1 5 5 O 1.21270 * 120.00249 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99590 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00256 * 180.02562 * 6 4 3 8 8 H 1.08996 * 110.27016 * 35.63490 * 7 6 4 9 9 C 1.53997 * 110.30597 * 273.54836 * 7 6 4 10 10 N 1.47906 * 107.05390 * 242.20500 * 9 7 6 11 11 C 1.46904 * 110.99859 * 214.15598 * 10 9 7 12 12 C 1.50695 * 109.46798 * 170.00294 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27179 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99893 * 0.02562 * 14 12 11 16 16 C 1.52996 * 109.47198 * 90.00083 * 15 14 12 17 17 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 18 18 C 1.50703 * 109.47219 * 89.99688 * 17 14 12 19 19 H 1.07996 * 119.99587 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00012 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99994 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46889 * 90.00281 * 22 20 18 24 24 H 1.48510 * 109.46825 * 210.00042 * 22 20 18 25 25 H 1.48494 * 109.47200 * 329.99914 * 22 20 18 26 26 C 1.48534 * 105.82161 * 334.67074 * 10 9 7 27 27 C 1.54597 * 110.39425 * 157.77920 * 7 6 4 28 28 H 1.08999 * 110.72322 * 22.38397 * 27 7 6 29 29 O 1.42901 * 110.72297 * 259.27282 * 27 7 6 30 30 H 1.09006 * 109.46982 * 299.99859 * 1 2 3 31 31 H 1.08994 * 109.47648 * 59.99322 * 1 2 3 32 32 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46617 * 240.00827 * 2 1 3 34 34 H 1.08994 * 109.47648 * 120.00678 * 2 1 3 35 35 H 1.08997 * 109.46932 * 60.01035 * 3 2 1 36 36 H 1.08997 * 109.47408 * 300.00228 * 3 2 1 37 37 H 0.97004 * 119.99948 * 0.02562 * 6 4 3 38 38 H 1.09002 * 109.91861 * 122.85679 * 9 7 6 39 39 H 1.08994 * 110.08572 * 1.64653 * 9 7 6 40 40 H 1.09005 * 109.47078 * 50.00175 * 11 10 9 41 41 H 1.09002 * 109.47005 * 290.00391 * 11 10 9 42 42 H 1.08997 * 109.46865 * 210.00034 * 15 14 12 43 43 H 1.08998 * 109.47058 * 329.99547 * 15 14 12 44 44 H 1.08998 * 109.47221 * 179.97438 * 16 15 14 45 45 H 1.08997 * 109.47172 * 299.99762 * 16 15 14 46 46 H 1.08998 * 109.47554 * 59.99767 * 16 15 14 47 47 H 1.08998 * 109.47416 * 209.99869 * 17 14 12 48 48 H 1.09008 * 109.47058 * 330.00468 * 17 14 12 49 49 H 0.97008 * 119.99482 * 180.02562 * 21 20 18 50 50 H 1.09001 * 110.66846 * 157.64009 * 26 10 9 51 51 H 1.08994 * 110.66653 * 280.77052 * 26 10 9 52 52 H 0.96698 * 113.99629 * 179.97438 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0014 8 1 6.0630 1.7792 -0.5981 9 6 6.2215 2.5192 1.4396 10 7 6.9905 3.7565 1.6950 11 6 8.1348 3.4923 2.5777 12 6 9.0279 4.7053 2.6188 13 8 8.7373 5.6944 1.9800 14 7 10.1474 4.6928 3.3694 15 6 10.4960 3.4997 4.1448 16 6 11.3646 2.5729 3.2918 17 6 11.0160 5.8718 3.4089 18 6 10.5781 6.7811 4.5281 19 1 9.7367 6.5082 5.1476 20 6 11.2511 7.9618 4.7604 21 7 10.8692 8.7550 5.7374 22 14 12.7052 8.4347 3.6874 23 1 12.2263 9.2254 2.5252 24 1 13.6611 9.2492 4.4801 25 1 13.3842 7.2057 3.2041 26 6 7.4443 4.2334 0.3636 27 6 6.2241 3.9516 -0.5487 28 1 5.4750 4.7371 -0.4491 29 8 6.6324 3.8147 -1.9113 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.7359 3.4497 0.0009 38 1 6.8719 1.6503 1.5401 39 1 5.3923 2.4455 2.1432 40 1 8.6974 2.6394 2.1978 41 1 7.7750 3.2717 3.5827 42 1 11.0475 3.7949 5.0374 43 1 9.5851 2.9772 4.4368 44 1 11.6243 1.6855 3.8689 45 1 10.8131 2.2777 2.3992 46 1 12.2755 3.0955 2.9998 47 1 12.0464 5.5585 3.5773 48 1 10.9486 6.4048 2.4604 49 1 11.3425 9.5860 5.9006 50 1 7.6652 5.3004 0.3918 51 1 8.3139 3.6683 0.0284 52 1 6.9777 4.6290 -2.3021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190685045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:41 Heat of formation + Delta-G solvation = -110.655790 kcal Electronic energy + Delta-G solvation = -30687.705544 eV Core-core repulsion = 26494.518980 eV Total energy + Delta-G solvation = -4193.186565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53265 -39.57497 -38.44526 -36.08236 -35.43518 -34.75659 -34.44566 -32.75459 -30.83255 -30.31972 -28.82626 -28.12335 -27.54770 -25.74464 -23.03401 -22.72336 -22.23204 -21.50939 -20.88106 -20.40474 -18.49406 -17.80451 -17.33482 -16.94668 -16.74636 -16.29675 -16.14111 -15.75619 -15.30287 -15.04740 -14.65465 -14.35119 -14.32311 -14.04239 -13.59477 -13.51909 -13.43539 -13.28074 -12.95596 -12.88697 -12.66742 -12.51870 -12.33122 -12.21265 -12.05398 -12.01351 -11.84903 -11.56780 -11.52478 -11.41411 -11.08254 -11.00162 -10.87995 -10.70363 -10.53777 -10.33574 -10.17505 -9.96717 -9.54984 -9.39598 -8.95147 -8.61006 -8.42348 -7.75677 -6.10438 -4.09173 2.40904 2.85428 3.25502 3.26504 3.32377 3.33948 3.47998 3.80305 4.18576 4.34474 4.37256 4.47651 4.53810 4.65746 4.68982 4.86350 4.94531 5.07782 5.12310 5.14394 5.18521 5.22652 5.25325 5.26906 5.29019 5.38334 5.49384 5.50951 5.56410 5.65387 5.67073 5.72296 5.78767 5.80926 5.93503 5.97637 6.08725 6.15485 6.26270 6.34631 6.62986 6.73206 6.82339 6.93097 7.23550 7.31422 7.40413 7.58771 7.98651 8.20045 8.44991 8.90087 8.95792 9.49622 11.02920 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002195 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.664526 B =12754.187738 C =12942.316963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.513 3.487 5 O -0.540 6.540 6 N -0.720 5.720 7 C 0.143 3.857 8 H 0.104 0.896 9 C 0.028 3.972 10 N -0.493 5.493 11 C 0.028 3.972 12 C 0.510 3.490 13 O -0.528 6.528 14 N -0.592 5.592 15 C 0.105 3.895 16 C -0.170 4.170 17 C 0.218 3.782 18 C -0.528 4.528 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.876 3.124 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.005 3.995 27 C 0.092 3.908 28 H 0.078 0.922 29 O -0.562 6.562 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.402 0.598 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.035 0.965 49 H 0.264 0.736 50 H 0.124 0.876 51 H 0.050 0.950 52 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -15.741 -11.883 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.300 3.700 5 O -0.417 6.417 6 N -0.372 5.372 7 C 0.038 3.962 8 H 0.122 0.878 9 C -0.101 4.101 10 N -0.218 5.218 11 C -0.103 4.103 12 C 0.296 3.704 13 O -0.405 6.405 14 N -0.324 5.324 15 C -0.019 4.019 16 C -0.228 4.228 17 C 0.097 3.903 18 C -0.566 4.566 19 H 0.093 0.907 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.123 4.123 27 C 0.032 3.968 28 H 0.096 0.904 29 O -0.367 6.367 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.068 0.932 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.414 -16.019 -11.763 24.551 hybrid contribution 1.334 0.757 -0.651 1.666 sum -13.080 -15.263 -12.414 23.625 Atomic orbital electron populations 1.21796 0.95458 1.01990 1.01812 1.21281 0.95265 0.94633 1.03590 1.21735 0.91509 1.00330 1.04517 1.20813 0.90414 0.83483 0.75312 1.90706 1.70546 1.31287 1.49164 1.46074 1.06513 1.09002 1.75625 1.21656 0.80069 0.98691 0.95826 0.87830 1.23355 0.98929 0.91991 0.95810 1.64626 1.20360 1.25754 1.11097 1.22347 0.91814 0.96478 0.99704 1.20084 0.81405 0.88705 0.80172 1.90574 1.71494 1.34526 1.43923 1.47932 1.23817 1.15535 1.45079 1.21462 0.99232 0.86034 0.95181 1.22232 1.00835 0.99492 1.00250 1.19639 0.88970 0.83281 0.98372 1.21322 1.16668 1.04038 1.14585 0.90726 1.24863 0.97216 0.95929 0.95046 1.69902 1.40996 1.12165 1.30449 0.86853 0.82780 0.79112 0.80927 1.19954 1.21077 1.19145 1.24177 0.95521 1.05042 0.87572 1.22982 0.96156 0.95922 0.81720 0.90433 1.86467 1.85370 1.39673 1.25224 0.92618 0.92698 0.92403 0.91282 0.91187 0.88721 0.88891 0.76269 0.92628 0.89437 0.92102 0.87863 0.89557 0.91408 0.91869 0.93179 0.92170 0.95303 0.94673 0.92573 0.85844 0.93205 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.80 5.22 -26.73 -0.14 -0.94 16 3 C -0.14 -0.93 5.70 -27.88 -0.16 -1.09 16 4 C 0.51 5.23 7.82 -10.98 -0.09 5.14 16 5 O -0.54 -7.66 15.68 5.57 0.09 -7.57 16 6 N -0.72 -6.63 5.03 -52.49 -0.26 -6.90 16 7 C 0.14 1.62 3.06 -66.57 -0.20 1.42 16 8 H 0.10 1.38 7.57 -51.93 -0.39 0.99 16 9 C 0.03 0.34 6.48 -2.75 -0.02 0.32 16 10 N -0.49 -6.98 5.26 -231.88 -1.22 -8.20 16 11 C 0.03 0.41 4.07 -4.98 -0.02 0.39 16 12 C 0.51 9.93 7.38 -10.98 -0.08 9.85 16 13 O -0.53 -12.11 13.11 5.56 0.07 -12.04 16 14 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 15 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16 16 C -0.17 -2.10 10.24 37.16 0.38 -1.71 16 17 C 0.22 5.20 4.23 -5.19 -0.02 5.18 16 18 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 19 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 22 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 26 C 0.00 0.07 5.03 -1.90 -0.01 0.06 16 27 C 0.09 1.02 4.15 -24.87 -0.10 0.92 16 28 H 0.08 0.77 7.74 -51.93 -0.40 0.36 16 29 O -0.56 -6.03 13.40 -35.23 -0.47 -6.50 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 2.72 8.35 -40.82 -0.34 2.38 16 38 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.06 0.78 6.86 -51.93 -0.36 0.42 16 41 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 42 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 43 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 48 H 0.04 0.89 6.85 -51.92 -0.36 0.54 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.12 2.02 5.97 -51.93 -0.31 1.71 16 51 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 52 H 0.38 2.69 9.12 45.56 0.42 3.10 16 LS Contribution 413.56 15.07 6.23 6.23 Total: -1.00 -36.22 413.56 -8.68 -44.90 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.24 Total: 4.92 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.56 Total: 7.31 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.14 Total: -53.92 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.31 Total: -26.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.22 -8.68 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190685045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.754 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds